NO17G02890.2, NO17G02890.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02890.2
Unique NameNO17G02890.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1790
Alignment locationchr17:843003..845694 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:843003..845694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02890.2 vs.
Match: XP_005853668.1 (rubredoxin-type fe 4 protein [Nannochloropsis gaditana CCMP526]; EKU22692.1 rubredoxin-type fe 4 protein [Nannochloropsis gaditana CCMP526]; EWM24114.1 Rubredoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 233.0 bits (593), Expect = 8.100e-58
Identity = 135/200 (67.50%), Postives = 154/200 (77.00%), Query Frame = 0 
Query:    1 MPPFSLRTLSSLVVALLLVAIACTSAFLLPTPSTSPVASSIARKALPQASAASRRPVSTLFAAAEDGTQDSELIGPVAPPAPTVPTVEEKKEEDMTEEEKAFKAKMDKIKELKAKEVFQTSDTGDFECQVCGWQYKEEKGFGPYPPGTAFAALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGTEGGREGKRGGV 201
            MP  + RT+ + V  LLLVA    SAF LP+   S V S+ +  AL +   ASRRP+ + +AA+E+G +D+ELIGP APPAP V    EK EEDMTEEEKA KAKMDKIKELKAKEVFQT DTGD+ECQVCGWQYKEEKGFGPYP GTAFAALPADFKCPNCKAGKPAF S+ KTIAGFSDNSKYGFG       ++GG+
Sbjct:    1 MPSSTSRTILN-VCLLLLVAFVSASAFFLPS---SRVLSTGSNHALHK-HVASRRPLPS-YAASEEGVKDTELIGPTAPPAPAVV---EKAEEDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKGFGPYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGL 191
The following BLAST results are available for this feature:
BLAST of NO17G02890.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853668.18.100e-5867.50rubredoxin-type fe 4 protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02890NO17G02890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02890.2NO17G02890.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02890.2.cds1NO17G02890.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02890.2.cds2NO17G02890.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02890.2.cds3NO17G02890.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02890.2.cds4NO17G02890.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02890.2.cds5NO17G02890.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02890.2.cds6NO17G02890.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02890.2 ID=NO17G02890.2|Name=NO17G02890.2|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp
AAAACCACCCGCCATAAAAGTAACACATATTGACAACAGGCACGCAGAGA
GGGAGGTCCTGTGTGAGTAAGCGTGAGCGCTTGCTTTCCAAGTGCCATCG
CACCTCGCATCATCAGTGAGCATCCTCCCTCATCCACGCGATCTGTCCTC
TCGATTTCCACAGGTCCATAATAGCACCTTGTGTGTCGAAGCTGGCTTGC
CCTCCTTTGCGCCCTCCCTTTCGTCTACGCGAAGACCTTGTCCTGGGGCA
GGGATAGATGAAAGAATTGTGTGTATTGTGCCTCCTGCATCACCCTGGCC
CACCTGCCAGCCAACCCGCCATCCTCTTCCTCTGCACGCATGCAGGCATC
ACACCACTCCCTTGAGTCTCATCAATGACTCACCGTTGTGTCCCCTCCCT
GCTCAACTCTCCTTTCCCGCTCAACAGTCAGCCAGCCTCACCATGCCTCC
CTTCTCTCTAAGAACGTTGTCGAGCCTTGTCGTCGCCCTGCTACTGGTGG
CGATTGCCTGCACTTCTGCCTTCCTCCTCCCCACCCCTTCTACCTCTCCC
GTCGCCTCCTCCATCGCACGAAAGGCTTTGCCCCAAGCAAGTGCGGCCTC
GAGGAGACCAGTCTCCACTCTCTTCGCCGCCGCCGAGGACGGTACCCAAG
ACAGTGAATTGATCGGCCCCGTTGCCCCTCCTGCCCCGACAGTGCCCACG
GTGGAAGAGAAGAAGGAGGAAGACATGACAGAGGAGGAGAAGGCTTTCAA
GGCAAAGATGGACAAAATCAAGGAGTTAAAGGCCAAGGAGGTGTTCCAAA
CTTCGGATACTGGTGACTTTGAATGCCAGGTCTGCGGATGGCAGTATAAG
GAGGAGAAGGGATTTGGCCCCTACCCTCCCGGCACGGCTTTCGCGGCCTT
GCCGGCTGATTTCAAGTGCCCGAACTGCAAGGCCGGCAAGCCCGCTTTCA
CGAGCGTGGTCAAGACCATCGCCGGCTTCAGCGATAATTCCAAATACGGC
TTTGGTACAGAAGGGGGGAGGGAGGGAAAGAGGGGAGGGGTAAAGGTGGT
GTAGTGATCTCTGCGGATGAAGCAACCGACCGTGATGGGTATTTTGAGAC
ATCGACTCGAGCTCGAGGCTAAAGCTTACCTCCCTCCCTTCCTTTTCTCC
CTCCCTTTTATTCTCTTCAGGCGGCAACAATCTAACGTCGGAGCAGAAAG
GCGGTCTGATTTTTGGGGGGCTGTTCTTCTTCTTCGTCCTCTTCTTGAGT
GGCTACCTGCTGGAGTAGAGCGAGGAAGCGAGGGAGGCAGGGAGACGGGA
TAGGTCCGGGTCTGCTGTGGCAGACATTTGGAAAGGCCTGGGGAGGAAAG
AGGACGCGATGACTAAGGACGAGAGGAGGGAAGGAGGAAGGGAAAGTCAC
CAAGGGGGGATGGCAGATCAGGCATTGGCTCTACTTTAGAAATTGGTGGC
GTGTGTGTAACAACACAACTACACACGCACATGCAGAAAGAATAGAAGAA
CTGTTAAACATCAGCAACTTTCGAATCACATTAAGCCCTGTCAGTCTTAA
TGGTTGCCTTTTTTGTGAGTGAGCCTTCTGTCGAATCGCAATACATATAA
CAGGAATAGGCAGGTTAAGAGTAGAGAAAATGGAAAGAGGAAGAGGATGT
GGATTGTTCCAGTAGTCTATGCTTGATTACATAAATGGAGTGGAGGTGTC
GATCTTGTGTGTATGGTAGTGTTTGAAGGAATAAGAGCATTTAAGGCGAG
AGAGGAGGTTCTTCACTTATGGCACTAAATTCAGCAACAC
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protein sequence of NO17G02890.2

>NO17G02890.2-protein ID=NO17G02890.2-protein|Name=NO17G02890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MPPFSLRTLSSLVVALLLVAIACTSAFLLPTPSTSPVASSIARKALPQAS
AASRRPVSTLFAAAEDGTQDSELIGPVAPPAPTVPTVEEKKEEDMTEEEK
AFKAKMDKIKELKAKEVFQTSDTGDFECQVCGWQYKEEKGFGPYPPGTAF
AALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGTEGGREGKRGGV
KVV*
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mRNA from alignment at chr17:843003..845694+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02890.2 ID=NO17G02890.2|Name=NO17G02890.2|organism=Nannochloropsis oceanica|type=mRNA|length=2692bp|location=Sequence derived from alignment at chr17:843003..845694+ (Nannochloropsis oceanica)
AAAACCACCCGCCATAAAAGTAACACATATTGACAACAGGCACGCAGAGA
GGGAGGTCCTGTGTGAGTAAGCGTGAGCGCTTGCTTTCCAAGTGCCATCG
CACCTCGCATCATCAGTGAGCATCCTCCCTCATCCACGCGATCTGTCCTC
TCGATTTCCACAGGTCCATAATAGCACCTTGTGTGTCGAAGCTGGCTTGC
CCTCCTTTGCGCCCTCCCTTTCGTCTACGCGAAGACCTTGTCCTGGGGCA
GGGATAGATGAAAGAATTGTGTGTATTGTGCCTCCTGCATCACCCTGGCC
CACCTGCCAGCCAACCCGCCATCCTCTTCCTCTGCACGCATGCAGGCATC
ACACCACTCCCTTGAGTCTCATCAATGACTCACCGTTGTGTCCCCTCCCT
GCTCAACTCTCCTTTCCCGCTCAACAGTCAGCCAGCCTCACCATGCCTCC
CTTCTCTCTAAGAACGTTGTCGAGCCTTGTCGTCGCCCTGCTACTGGTGG
CGATTGCCTGCACTTCTGCCTTCCTCCTCCCCACCCCTTCTACCTCTCCC
GTCGGTGCGTACGTAGGCCCTTCCATGCTGACCCCCCTCATGACATAACG
ATGTCTACAGGCGTCTTCTATGCATGGTATGCTGTAGTAGTATTCATTTG
TCCATATCTTTCATCCCTCTCCCGTAGCCTCCTCCATCGCACGAAAGGCT
TTGCCCCAAGCAAGTGCGGCCTCGAGGAGACCAGTCTCCACTCTCTTCGC
CGCCGCCGAGGACGGTACCCAAGACAGTGAATGTACGTACCAAACAGCCA
TGGATATTTGCGTATTCCTCATCCCTTATCCCCTGTCCTCCTTGTCAGAG
AGAGATTTGCCCTCTTTCTACACTCTTGGCTTTTATGGGATTGCTTTGAA
GGGGACATTCAAGGCTGATTCATTCAACCACATCTACCCCCCCTCCCTCA
TCGCCCTCCCTGCTCCTCATCTAGTGATCGGCCCCGTTGCCCCTCCTGCC
CCGACAGTGCCCACGGTGGAAGAGAAGAAGGAGGAAGACATGACAGAGGA
GGAGAAGGCTTTCAAGGTGCGGAGGGGGGGATGAAGGGAGGGAGGGAGGG
AAGGAGAGGGCATCGAGCCGAGCTGTCCTGCACCCGTTGTTCAAAGACCA
TCCATCAAAGTGACTGTATGATTGTCATTAATCACGATTTTCTTCTCTCT
TGCTTCACTGGGTTGCCGGACGCTCATGGCACTACTGACACATTGCACTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTACAGGC
AAAGATGGACAAAATCAAGGAGTTAAAGGCCAAGGAGGTGTTCCAAACTT
CGGTAGGGAGGGGAATAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GAACAAAGCTGTCTCTCAGTCAGGAGAAACGAATCAATTAACGTGAGCCA
CATTCGTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCTCTTCCCCCTCCAA
TATCTCGCAAACAGGATACTGGTGACTTTGAATGCCAGGTCTGCGGATGG
CAGTATAAGGAGGAGAAGGGATTTGGCCCCTACCCTCCCGGCACGGCTTT
CGCGGCCTTGCCGGCTGATTTCAAGTGAGGAGGGAGGGAGGGAGGGAGGG
AAGGAGTGGGGGAGGGAGAGGGAGGGGTAGAGTGGCTGGGTGCACGGGAG
AGGAGGGGAGGGAAAATGGGTCTTACGTCGGGGGTTTAGATAGTCCGGAA
ACATATATCACCACTCACTCACCCCTCCCTCTCTCCCTCTCTCCCTCTTT
TCCTCTCTCTTTCCCAGGTGCCCGAACTGCAAGGCCGGCAAGCCCGCTTT
CACGAGCGTGGTCAAGACCATCGCCGGCTTCAGCGATAATTCCAAATACG
GCTTTGGTACAGAAGGGGGGAGGGAGGGAAAGAGGGGAGGGGTAAAGGTG
GTGTAGTGATCTCTGCGGATGAAGCAACCGACCGTGATGGGTATTTTGAG
ACATCGACTCGAGCTCGAGGCTAAAGCTTACCTCCCTCCCTTCCTTTTCT
CCCTCCCTTTTATTCTCTTCAGGCGGCAACAATCTAACGTCGGAGCAGAA
AGGCGGTCTGATTTTTGGGGGGCTGTTCTTCTTCTTCGTCCTCTTCTTGA
GTGGCTACCTGCTGGAGTAGAGCGAGGAAGCGAGGGAGGCAGGGAGACGG
GATAGGTCCGGGTCTGCTGTGGCAGACATTTGGAAAGGCCTGGGGAGGAA
AGAGGACGCGATGACTAAGGACGAGAGGAGGGAAGGAGGAAGGGAAAGTC
ACCAAGGGGGGATGGCAGATCAGGCATTGGCTCTACTTTAGAAATTGGTG
GCGTGTGTGTAACAACACAACTACACACGCACATGCAGAAAGAATAGAAG
AACTGTTAAACATCAGCAACTTTCGAATCACATTAAGCCCTGTCAGTCTT
AATGGTTGCCTTTTTTGTGAGTGAGCCTTCTGTCGAATCGCAATACATAT
AACAGGAATAGGCAGGTTAAGAGTAGAGAAAATGGAAAGAGGAAGAGGAT
GTGGATTGTTCCAGTAGTCTATGCTTGATTACATAAATGGAGTGGAGGTG
TCGATCTTGTGTGTATGGTAGTGTTTGAAGGAATAAGAGCATTTAAGGCG
AGAGAGGAGGTTCTTCACTTATGGCACTAAATTCAGCAACAC
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Coding sequence (CDS) from alignment at chr17:843003..845694+

>NO17G02890.2 ID=NO17G02890.2|Name=NO17G02890.2|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr17:843003..845694+ (Nannochloropsis oceanica)
ATGCCTCCCTTCTCTCTAAGAACGTTGTCGAGCCTTGTCGTCGCCCTGCT
ACTGGTGGCGATTGCCTGCACTTCTGCCTTCCTCCTCCCCACCCCTTCTA
CCTCTCCCGTCGCCTCCTCCATCGCACGAAAGGCTTTGCCCCAAGCAAGT
GCGGCCTCGAGGAGACCAGTCTCCACTCTCTTCGCCGCCGCCGAGGACGG
TACCCAAGACAGTGAATTGATCGGCCCCGTTGCCCCTCCTGCCCCGACAG
TGCCCACGGTGGAAGAGAAGAAGGAGGAAGACATGACAGAGGAGGAGAAG
GCTTTCAAGGCAAAGATGGACAAAATCAAGGAGTTAAAGGCCAAGGAGGT
GTTCCAAACTTCGGATACTGGTGACTTTGAATGCCAGGTCTGCGGATGGC
AGTATAAGGAGGAGAAGGGATTTGGCCCCTACCCTCCCGGCACGGCTTTC
GCGGCCTTGCCGGCTGATTTCAAGTGCCCGAACTGCAAGGCCGGCAAGCC
CGCTTTCACGAGCGTGGTCAAGACCATCGCCGGCTTCAGCGATAATTCCA
AATACGGCTTTGGTACAGAAGGGGGGAGGGAGGGAAAGAGGGGAGGGGTA
AAGGTGGTGTAG
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Synonyms
Publications