NO17G02890, NO17G02890 (gene) Nannochloropsis oceanica

Overview
NameNO17G02890
Unique NameNO17G02890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2692
Alignment locationchr17:843003..845694 +

Link to JBrowse

Properties
Property NameValue
DescriptionRubredoxin-type fe 4 protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:843003..845694 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0005506iron ion binding
Vocabulary: INTERPRO
TermDefinition
IPR024934Rubredoxin-like_dom
IPR024935Rubredoxin_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO17G02890 vs. NCBI_GenBank
Match: XP_005853668.1 (rubredoxin-type fe 4 protein [Nannochloropsis gaditana CCMP526] >EKU22692.1 rubredoxin-type fe 4 protein [Nannochloropsis gaditana CCMP526] >EWM24114.1 Rubredoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 153.3 bits (386), Expect = 8.100e-34
Identity = 98/200 (49.00%), Postives = 116/200 (58.00%), Query Frame = 0 
Query:    1 MPPFSLRTLSSLVVALLLVAIACTSAFLLPTPSTSPVASSIARKALPQASAASRRPVSTLFAAAEDGTQDSELIGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGDFECQVCGWQYKEEKGFGPYPPGTAFAALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGTEGGREGKRGGV 201
            MP  + RT+ + V  LLLVA    SAF LP   +S V S+ +  AL     ASRRP+ + +AA+E+G +D+ELIGP                                              TGD+ECQVCGWQYKEEKGFGPYP GTAFAALPADFKCPNCKAGKPAF S+ KTIAGFSDNSKYGFG       ++GG+
Sbjct:    1 MPSSTSRTILN-VCLLLLVAFVSASAFFLP---SSRVLSTGSNHAL-HKHVASRRPLPS-YAASEEGVKDTELIGP---TAPPAPAVVEKAEEDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKGFGPYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGL 191
[Close]
BLAST of NO17G02890 vs. NCBI_GenBank
Match: XP_001712434.1 (rub [Hemiselmis andersenii] >ABW98109.1 rub [Hemiselmis andersenii])

HSP 1 Score: 83.6 bits (205), Expect = 7.900e-13
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:  124 GDFECQVCGWQYKEEKG--FGPYPPGTAFAALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFG 189
            G FECQ CG+ Y+ EKG  F    PGTAF AL +DF CP C++ K  F S+ KTIAGF++N KYG G
Sbjct:   77 GKFECQACGYVYEPEKGDRFAGIEPGTAFTALSSDFNCPACRSPKSQFKSIKKTIAGFAENQKYGLG 143
[Close]
BLAST of NO17G02890 vs. NCBI_GenBank
Match: ABD51948.1 (rubredoxin, partial (nucleomorph) [Rhodomonas salina])

HSP 1 Score: 80.1 bits (196), Expect = 8.800e-12
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 0 
Query:  124 GDFECQVCGWQYKEEKG--FGPYPPGTAFAALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGTEGGREGKRGGV 201
            G +ECQ CG+ Y+ EKG  F    PGT F  LP DF CP C++ K  F SV K IAGF++N KYG G      G++  V
Sbjct:   19 GKYECQACGYMYEPEKGDRFAGVEPGTQFIDLPEDFSCPACRSSKTQFKSVKKVIAGFAENQKYGLGGNSLTSGQKNTV 97
[Close]
BLAST of NO17G02890 vs. NCBI_GenBank
Match: OSX79237.1 (hypothetical protein BU14_0082s0002 [Porphyra umbilicalis])

HSP 1 Score: 78.6 bits (192), Expect = 2.500e-11
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 0 
Query:  124 GDFECQVCGWQYKEEKG--FGPYPPGTAFAALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGTEGGREGKRGGV 201
            G+FEC  CG+ Y + KG        GT FA LP+DF CP+CK  K AF  + K IAGF+DN  YGFGT     G++  +
Sbjct:  108 GNFECPTCGYVYVKSKGEFLSGVKSGTEFADLPSDFTCPSCKTPKSAFRPITKVIAGFADNQSYGFGTNSLTGGQKSAL 186
[Close]
BLAST of NO17G02890 vs. NCBI_GenBank
Match: KXZ56953.1 (hypothetical protein GPECTOR_1g86 [Gonium pectorale])

HSP 1 Score: 77.4 bits (189), Expect = 5.700e-11
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0 
Query:  123 TGDFECQVCGWQYKEEKGFG--PYPPGTAFAALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGTEGGREGKR 198
            +GD  C+ CG++YK EKG    P PPG  F ALP D+ CP C A K  F S +K +AGF++N +YG G     EG++
Sbjct:   70 SGDATCKGCGYEYKPEKGDPEFPVPPGVTFQALPEDYVCPICGAPKSQFESRMKVVAGFAENQRYGLGGNSMTEGQK 146
[Close]
BLAST of NO17G02890 vs. NCBI_GenBank
Match: AFP65292.1 (rubredoxin (nucleomorph) [Chroomonas mesostigmatica CCMP1168])

HSP 1 Score: 77.0 bits (188), Expect = 7.400e-11
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 0 
Query:  124 GDFECQVCGWQYKEEKG--FGPYPPGTAFAALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFG 189
            G FECQ CG+ Y+ EKG  F    PGT F  LP+DF CP C++ K  F ++ K IAGF++N +YG G
Sbjct:  100 GKFECQACGYVYEPEKGDRFAGIEPGTTFPDLPSDFYCPACRSPKTQFKNIKKVIAGFAENQQYGLG 166
[Close]
BLAST of NO17G02890 vs. NCBI_GenBank
Match: OLP84198.1 (putative phosphoglucomutase, cytoplasmic 1 [Symbiodinium microadriaticum])

HSP 1 Score: 75.1 bits (183), Expect = 2.800e-10
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0 
Query:  123 TGDFECQVCGWQYKEEKGFGPYPPGTAFAALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGTEGGREGKRG 199
            TG ++CQ CG++Y    G G Y PGT F  LP+ ++CP C+  K  F +V++ +AGF++N  YG G      G++G
Sbjct:  486 TGRYDCQNCGYEYNPLFGEGNYGPGTKFEDLPSSWRCPQCQVSKDEFQAVIEEVAGFAENQDYGVGFNTWTSGQKG 561
[Close]
BLAST of NO17G02890 vs. NCBI_GenBank
Match: XP_001700979.1 (rubredoxin [Chlamydomonas reinhardtii] >PNW80381.1 hypothetical protein CHLRE_07g315150v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 73.9 bits (180), Expect = 6.300e-10
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 0 
Query:  123 TGDFECQVCGWQYKEEKGFGPYP--PGTAFAALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGTEGGREGKRGGV 201
            +G   C+ CG++YK EKG   +P  PGT + +LP D+ CP C A K  F S VK +AGF++N +YG G     E ++ G+
Sbjct:   71 SGSATCKGCGYEYKPEKGDPEFPVAPGTTYQSLPEDYTCPICGAPKTKFESRVKVVAGFAENQQYGLGGNSMTEAQKSGL 150
[Close]
BLAST of NO17G02890 vs. NCBI_GenBank
Match: EJK66055.1 (hypothetical protein THAOC_13041 [Thalassiosira oceanica])

HSP 1 Score: 73.6 bits (179), Expect = 8.200e-10
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 0 
Query:  123 TGDFECQVCGWQYKEEKG-----FGPYPPGTAFAALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGTEGGREGKR 198
            TG + C+ C W+Y  EKG      G   PGTAF   P++++CP C+A K  F  VV+TI GF  N  YGFGT     G++
Sbjct:   98 TGVYVCKSCDWEYDPEKGDSFLIGGMIKPGTAFEDTPSNWRCPTCRASKDQFEEVVETIPGFEVNQGYGFGTNSMTTGEK 177
[Close]
BLAST of NO17G02890 vs. NCBI_GenBank
Match: XP_001713191.1 (rubredoxin [Guillardia theta] >CAB40406.1 rubredoxin [Guillardia theta])

HSP 1 Score: 73.6 bits (179), Expect = 8.200e-10
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 0 
Query:  124 GDFECQVCGWQYKEEKG--FGPYPPGTAFAALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGTEGGREGKR 198
            G +EC+ CG+ Y+ EKG  F   PPGT F  L   F CP C++ K  F S+ K IAGF++N KYG G      G++
Sbjct:   62 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVIAGFAENQKYGLGGNSLTSGQK 137
The following BLAST results are available for this feature:
BLAST of NO17G02890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853668.18.100e-3449.00rubredoxin-type fe 4 protein [Nannochloropsis gadi... [more]
XP_001712434.17.900e-1356.72rub [Hemiselmis andersenii] >ABW98109.1 rub [Hemis... [more]
ABD51948.18.800e-1248.10rubredoxin, partial (nucleomorph) [Rhodomonas sali... [more]
OSX79237.12.500e-1146.84hypothetical protein BU14_0082s0002 [Porphyra umbi... [more]
KXZ56953.15.700e-1146.75hypothetical protein GPECTOR_1g86 [Gonium pectoral... [more]
AFP65292.17.400e-1150.75rubredoxin (nucleomorph) [Chroomonas mesostigmatic... [more]
OLP84198.12.800e-1040.79putative phosphoglucomutase, cytoplasmic 1 [Symbio... [more]
XP_001700979.16.300e-1042.50rubredoxin [Chlamydomonas reinhardtii] >PNW80381.1... [more]
EJK66055.18.200e-1043.75hypothetical protein THAOC_13041 [Thalassiosira oc... [more]
XP_001713191.18.200e-1044.74rubredoxin [Guillardia theta] >CAB40406.1 rubredox... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008447NSK008447Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02890.1NO17G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G02890.2NO17G02890.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100404g2gene6353Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02890.1NO17G02890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G02890.2NO17G02890.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02890 ID=NO17G02890|Name=NO17G02890|organism=Nannochloropsis oceanica|type=gene|length=2692bp
AAAACCACCCGCCATAAAAGTAACACATATTGACAACAGGCACGCAGAGA
GGGAGGTCCTGTGTGAGTAAGCGTGAGCGCTTGCTTTCCAAGTGCCATCG
CACCTCGCATCATCAGTGAGCATCCTCCCTCATCCACGCGATCTGTCCTC
TCGATTTCCACAGGTCCATAATAGCACCTTGTGTGTCGAAGCTGGCTTGC
CCTCCTTTGCGCCCTCCCTTTCGTCTACGCGAAGACCTTGTCCTGGGGCA
GGGATAGATGAAAGAATTGTGTGTATTGTGCCTCCTGCATCACCCTGGCC
CACCTGCCAGCCAACCCGCCATCCTCTTCCTCTGCACGCATGCAGGCATC
ACACCACTCCCTTGAGTCTCATCAATGACTCACCGTTGTGTCCCCTCCCT
GCTCAACTCTCCTTTCCCGCTCAACAGTCAGCCAGCCTCACCATGCCTCC
CTTCTCTCTAAGAACGTTGTCGAGCCTTGTCGTCGCCCTGCTACTGGTGG
CGATTGCCTGCACTTCTGCCTTCCTCCTCCCCACCCCTTCTACCTCTCCC
GTCGgtgcgtacgtaggcccttccatgctgacccccctcatgacataacg
atgtctacaggcgtcttctatgcatggtatgctgtagtagtattcatttg
tccatatctttcatccctctcccgtagCCTCCTCCATCGCACGAAAGGCT
TTGCCCCAAGCAAGTGCGGCCTCGAGGAGACCAGTCTCCACTCTCTTCGC
CGCCGCCGAGGACGGTACCCAAGACAGTGAATgtacgtaccaaacagcca
tggatatttgcgtattcctcatcccttatcccctgtcctccttgtcagag
agagatttgccctctttctacactcttggcttttatgggattgctttgaa
ggggacattcaaggctgattcattcaaccacatctaccccccctccctca
tcgccctccctgctcctcatctagTGATCGGCCCCGTTGCCCCTCCTGCC
CCGACAGTGCCCACGGTGGAAGAGAAGAAGGAGGAAGACATGACAGAGGA
GGAGAAGGCTTTCAAGgtgcggagggggggatgaagggagggagggaggg
aaggagagggcatcgagccgagctgtcctgcacccgttgttcaaagacca
tccatcaaagtgactgtatgattgtcattaatcacgattttcttctctct
tgcttcactgggttgccggacgctcatggcactactgacacattgcactc
cctccctccctccctccctccctccctccctccctccctctcttacagGC
AAAGATGGACAAAATCAAGGAGTTAAAGGCCAAGGAGGTGTTCCAAACTT
CGgtagggaggggaatagggagggagggagggagggagggagggagggag
gaacaaagctgtctctcagtcaggagaaacgaatcaattaacgtgagcca
cattcgtccctccctccctccctcccttcctccctctcttccccctccaa
tatctcgcaaacagGATACTGGTGACTTTGAATGCCAGGTCTGCGGATGG
CAGTATAAGGAGGAGAAGGGATTTGGCCCCTACCCTCCCGGCACGGCTTT
CGCGGCCTTGCCGGCTGATTTCAAgtgaggagggagggagggagggaggg
aaggagtgggggagggagagggaggggtagagtggctgggtgcacgggag
aggaggggagggaaaatgggtcttacgtcgggggtttagatagtccggaa
acatatatcaccactcactcacccctccctctctccctctctccctcttt
tcctctctctttcccagGTGCCCGAACTGCAAGGCCGGCAAGCCCGCTTT
CACGAGCGTGGTCAAGACCATCGCCGGCTTCAGCGATAATTCCAAATACG
GCTTTGGTACAGAAGGGGGGAGGGAGGGAAAGAGGGGAGGGGTAAAGGTG
GTGTAGTGATCTCTGCGGATGAAGCAACCGACCGTGATGGGTATTTTGAG
ACATCGACTCGAGCTCGAGGCTAAAGCTTACCTCCCTCCCTTCCTTTTCT
CCCTCCCTTTTATTCTCTTCAGGCGGCAACAATCTAACGTCGGAGCAGAA
AGGCGGTCTGATTTTTGGGGGGCTGTTCTTCTTCTTCGTCCTCTTCTTGA
GTGGCTACCTGCTGGAGTAGAGCGAGGAAGCGAGGGAGGCAGGGAGACGG
GATAGGTCCGGGTCTGCTGTGGCAGACATTTGGAAAGGCCTGGGGAGGAA
AGAGGACGCGATGACTAAGGACGAGAGGAGGGAAGGAGGAAGGGAAAGTC
ACCAAGGGGGGATGGCAGATCAGGCATTGGCTCTACTTTAGAAATTGGTG
GCGTGTGTGTAACAACACAACTACACACGCACATGCAGAAAGAATAGAAG
AACTGTTAAACATCAGCAACTTTCGAATCACATTAAGCCCTGTCAGTCTT
AATGGTTGCCTTTTTTGTGAGTGAGCCTTCTGTCGAATCGCAATACATAT
AACAGGAATAGGCAGGTTAAGAGTAGAGAAAATGGAAAGAGGAAGAGGAT
GTGGATTGTTCCAGTAGTCTATGCTTGATTACATAAATGGAGTGGAGGTG
TCGATCTTGTGTGTATGGTAGTGTTTGAAGGAATAAGAGCATTTAAGGCG
AGAGAGGAGGTTCTTCACTTATGGCACTAAATTCAGCAACAC
back to top

protein sequence of NO17G02890.1

>NO17G02890.1-protein ID=NO17G02890.1-protein|Name=NO17G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MPPFSLRTLSSLVVALLLVAIACTSAFLLPTPSTSPVASSIARKALPQAS
AASRRPVSTLFAAAEDGTQDSELIGPVAPPAPTVPTVEEKKEEDMTEEEK
AFKAKMDKIKELKAKEVFQTSDTGDFECQVCGWQYKEEKGFGPYPPGTAF
AALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGGNNLTSEQKGGL
IFGGLFFFFVLFLSGYLLE*
back to top

protein sequence of NO17G02890.2

>NO17G02890.2-protein ID=NO17G02890.2-protein|Name=NO17G02890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MPPFSLRTLSSLVVALLLVAIACTSAFLLPTPSTSPVASSIARKALPQAS
AASRRPVSTLFAAAEDGTQDSELIGPVAPPAPTVPTVEEKKEEDMTEEEK
AFKAKMDKIKELKAKEVFQTSDTGDFECQVCGWQYKEEKGFGPYPPGTAF
AALPADFKCPNCKAGKPAFTSVVKTIAGFSDNSKYGFGTEGGREGKRGGV
KVV*
back to top
Synonyms
Publications