NO17G02860.3, NO17G02860.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02860.3
Unique NameNO17G02860.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1240
Alignment locationchr17:836522..838670 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:836522..838670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO17G02860.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02860NO17G02860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02860.3NO17G02860.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02860.3.cds1NO17G02860.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02860.3.cds2NO17G02860.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02860.3.cds3NO17G02860.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02860.3.cds4NO17G02860.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02860.3.cds5NO17G02860.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02860.3.cds6NO17G02860.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02860.3 ID=NO17G02860.3|Name=NO17G02860.3|organism=Nannochloropsis oceanica|type=mRNA|length=1240bp
CAGTGCCATCCCCTCTTACACAGCCACAGTTCAATGAAGCTCTCATTCGC
CCTTGTTCTCTGCATTTACCTACCTGTGGTACTCCTGGCCTTGCCTGCTC
AAGAATGTCCTCCTGGTTTTGGCACCTCGGGATGGGTCAACGACATGGGG
TTTCTGGCTGATGCGGTCTCGATGGGGGGGCCCGATTTCAAGGACGACTC
CCAAGGTGTGTGTGGGACGTATAAAGTGATCAAGACGTGCGAAGCGCAGG
TAAAAGAAGAAGAGAGGGAAAGTGGAGGAGGAGGGACGAAGAGGACGAGG
GATAGGCTACGATTCTCGTCACCGCCTCTTCATTCCTCCCTCTGTCCTCC
GCATAATAGTACCAGACACGGATGCGTATTTACCAATCTAAGGCAGATAG
CAACGTGGTCGTCCTTTCATTTCGTCCGACTCAACAGAATACTGAGGGCC
TGGCCATCCACGACAGCCGGCAGATGGTTCCTTGCAAGTTTCTCCACCGG
GGCAACTGCACCGGTCGGGTCCACAGGAGGTTCCAACGGGCATTCCTGGA
GCTCATGACCAAGTGCCAAGGCGCAGTGGAGCAGATCAAACACAAGAAGC
ACATCTTCGTCACAGGCCACTCCCTGGGAGGAGCATTAGCGCTCTTCTTC
ACGTTGCATCTGTGGAGGGACCTAGGGATCTTACCAGCCATGAGCATCGG
CTTTGCAGGACCTTTTATCGGTGATGAGGACTTCACCGACGCCTACCAAG
AGCCGCTTAAGCACCTCATGGGCGACCAGTGGTGGCAGGTAGAGACCGTC
AACAAATACAACACCAGCGAATTCGATGGCACTGTGGAAGAATACAACAT
GGGCCAGGACGGACCTCAGATCTACATCGAGCGGGATGCCGTCTGTGGCG
TGTATATCAAGCCACTGCCTGTCGATACCAACCAGACCGCAAGCCCACAC
TACAGCTACGGTATGCACGACCTCAAAAACTACAGACTTCTCTCCGACCA
GGGGAAGGATTGCAGGGCCTTCTGAATAGCAGGAGGAGCAGGCGGAGCAG
GAGGAGCAGGAGCAGGAGTTGCAGTACGCAGTGATAAGTGTGCGAGCCTC
TCTATCTCTCCATTTACACATCTGCATACATGTACATACATGCAGATACA
CACGCACACATGCACAAACAAACACACATAGTATATATACATATGTATAC
ACAAACACATATATATATATATGTATATATATACATGTGT
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protein sequence of NO17G02860.3

>NO17G02860.3-protein ID=NO17G02860.3-protein|Name=NO17G02860.3|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MRIYQSKADSNVVVLSFRPTQQNTEGLAIHDSRQMVPCKFLHRGNCTGRV
HRRFQRAFLELMTKCQGAVEQIKHKKHIFVTGHSLGGALALFFTLHLWRD
LGILPAMSIGFAGPFIGDEDFTDAYQEPLKHLMGDQWWQVETVNKYNTSE
FDGTVEEYNMGQDGPQIYIERDAVCGVYIKPLPVDTNQTASPHYSYGMHD
LKNYRLLSDQGKDCRAF*
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mRNA from alignment at chr17:836522..838670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02860.3 ID=NO17G02860.3|Name=NO17G02860.3|organism=Nannochloropsis oceanica|type=mRNA|length=2149bp|location=Sequence derived from alignment at chr17:836522..838670- (Nannochloropsis oceanica)
CAGTGCCATCCCCTCTTACACAGCCACAGTTCAATGAAGCTCTCATTCGC
CCTTGTTCTCTGCATTTACCTACCTGTGGTACTCCTGGCCTTGCCTGCTC
AAGAATGTCCTCCTGGTTTTGGCACCTCGGGATGGGTCAACGACATGGGG
TTTCTGGCTGATGCGGTCTCGATGGGGGGGCCCGATTTCAAGGACGACTC
CCAAGGTGTGTGTGGGACGTATAAAGTGATCAAGACGTGCGAAGCGCAGG
TAAAAGAAGAAGAGAGGGAAAGTGGAGGAGGAGGGACGAAGAGGACGAGG
GATAGGCTACGATTCTCGTCACCGCCTCTTCATTCCTCCCTCTGTCCTCC
GCATAATAGTACCAGACACGGATGCGTATTTACCAATCTAAGGCAGATAG
CAACGTGGTCGTCCTTTCATTTCGTCCGACTCAACAGAATACTGAGGTAA
GAAGGCAAAAGAAAAGAGAGAGGAACAGGGGAGAGGAATGGATAGAGCGA
AGAAGGGGAGGGCGAGTTAAGGCATGTTGATATCGGCGCCTGCTCTTCAA
TTTAACTGTCGGACTGGTCGATGATTGATCCTCTGCTGTACACACAAGCC
ATCATCTCAGTCCCGCCCCCTCCCTATGTTCCCCCCTTCCTCCTTTCTTC
CTTCCGCCCACCAGGGCCTGGCCATCCACGACAGCCGGCAGATGGTTCCT
TGCAAGTTTCTCCACCGGGGCAACTGCACCGGTCGGGTCCACAGGAGGTT
CCAACGGGCATTCCTGGAGGTAAGGAGAGCAAAGGAGGGTGAACGGAACA
TTCCACAAGCTTTTTGTTTTGGGAGGCATGATCGAGGGAGGTTGAGGGGG
AGGGAGCTAGTGCGTCTTCTTGTGCCAGTCCCCCCCCGTGTGAGAGGGCC
TTGCACTGCACGACATATTTGCATCCCGGGAGACTTACTCAAGCTCAATC
TCCCCCCCTTCCACCCTCCCCCTCTACTCCTCCCAAGCTCATGACCAAGT
GCCAAGGCGCAGTGGAGCAGATCAAACACAAGAAGCACATCTTCGTCACA
GGCCACTCCCTGGGAGGAGCATTAGCGCTCTTCTTCACGTTGCATCTGTG
GAGGGACCTAGGGATCTTACCAGCCATGAGCATCGGCTTTGCAGGACCTT
TTATCGGTGATGAGGACTTCACCGACGCCTACCAAGAGCCGCTTAAGCAC
CTCATGGGCGACCAGTGGTGGCAGGCACGTATCTGACCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCTTCCCCCTT
CCCTTCCTTGCGTTCCTGGCCTCGGCCCTGTCATATTTCCTTCCTCCATT
TTCCCATATCTTTTTGTTCCCTCTCCTTCCTCTTAATCGACCACCCTTAC
AGGTAGAGACCGTCAACAAATACAACACCAGCGAATTCGATGGCACTGGT
AAGTTCCCCCCCTCCCTCTCTCCATCCCTCCATCCTATTCTTTCCTGATC
AATAACGCCTCTCCCCCTCCCTCCCCCTTCCCTGTCCACCTCTTTTCCCC
TCTAGTGGAAGAATACAACATGGGCCAGGACGGACCTCAGATCTACATCG
AGCGGGATGCCGTCTGTGGCGTGTATATCAAGCCACTGCCTGTCGATACC
AACCAGACCGCAAGCCCACACTACAGCTACGGTATGCACGACCTCAAAAA
CTACAGGTAGGCGCATGCATGACCATTGTCGCACCCCTCATTTCCTCCCT
CCCTCCCTCCCTCCTTCTCCACCACCCTCTCCACAATTCTCGTTTCTCCG
TCTTCCCTTCCTCCCCATCCACTTTCCTGCCTCTGACCCTGCTATGGTCT
TCCCCTGACTTTCTTCCTACCGCATCCCTGTCCCCTCGCCTCAGACTTCT
CTCCGACCAGGGGAAGGATTGCAGGGCCTTCTGAATAGCAGGAGGAGCAG
GCGGAGCAGGAGGAGCAGGAGCAGGAGTTGCAGTACGCAGTGATAAGTGT
GCGAGCCTCTCTATCTCTCCATTTACACATCTGCATACATGTACATACAT
GCAGATACACACGCACACATGCACAAACAAACACACATAGTATATATACA
TATGTATACACAAACACATATATATATATATGTATATATATACATGTGT
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Coding sequence (CDS) from alignment at chr17:836522..838670-

>NO17G02860.3 ID=NO17G02860.3|Name=NO17G02860.3|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at chr17:836522..838670- (Nannochloropsis oceanica)
ATGCGTATTTACCAATCTAAGGCAGATAGCAACGTGGTCGTCCTTTCATT
TCGTCCGACTCAACAGAATACTGAGGGCCTGGCCATCCACGACAGCCGGC
AGATGGTTCCTTGCAAGTTTCTCCACCGGGGCAACTGCACCGGTCGGGTC
CACAGGAGGTTCCAACGGGCATTCCTGGAGCTCATGACCAAGTGCCAAGG
CGCAGTGGAGCAGATCAAACACAAGAAGCACATCTTCGTCACAGGCCACT
CCCTGGGAGGAGCATTAGCGCTCTTCTTCACGTTGCATCTGTGGAGGGAC
CTAGGGATCTTACCAGCCATGAGCATCGGCTTTGCAGGACCTTTTATCGG
TGATGAGGACTTCACCGACGCCTACCAAGAGCCGCTTAAGCACCTCATGG
GCGACCAGTGGTGGCAGGTAGAGACCGTCAACAAATACAACACCAGCGAA
TTCGATGGCACTGTGGAAGAATACAACATGGGCCAGGACGGACCTCAGAT
CTACATCGAGCGGGATGCCGTCTGTGGCGTGTATATCAAGCCACTGCCTG
TCGATACCAACCAGACCGCAAGCCCACACTACAGCTACGGTATGCACGAC
CTCAAAAACTACAGACTTCTCTCCGACCAGGGGAAGGATTGCAGGGCCTT
CTGA
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Synonyms
Publications