NO17G02720, NO17G02720 (gene) Nannochloropsis oceanica

Overview
NameNO17G02720
Unique NameNO17G02720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3340
Alignment locationchr17:795916..799255 +

Link to JBrowse

Properties
Property NameValue
DescriptionAcyl-CoA dehydrogenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:795916..799255 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036250AcylCo_DH-like_C
IPR009100AcylCoA_DH/oxidase_NM_dom
IPR009075AcylCo_DH/oxidase_C
IPR006091Acyl-CoA_Oxase/DH_cen-dom
IPR013786AcylCoA_DH/ox_N
Homology
[Close]
BLAST of NO17G02720 vs. NCBI_GenBank
Match: CBN78251.1 (acyl-CoA dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 548.1 bits (1411), Expect = 2.400e-152
Identity = 274/408 (67.16%), Postives = 331/408 (81.13%), Query Frame = 0 
Query:   14 SAALFLQRGGVAGSKRTLAATDVRAYTSVSTLPEEYRSIREMVRSFADTELVPNAAKWDQEHTFPADQIKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPIEAFGTEAQKKEWLAPYASGANVGCFGLSEPGNGSDAGAASTTAVLHGDEYILNGSKAWITNAHEASAAIVFATTDKSLKHKGISAFIVPRDTPGFTVGKKEDKLGIRASSTATLTFEDVKVPKANLLGASGMGFRIAMVTLDSGRIGIAAQALGIAQAALECAVKYSKDRKAFGQPISKMYAIQLKLSQMASALESARLLTWRAAQLKDAGEDYVKEAAMAKLQASEASTMVAHQAIQVLGGMGYVSDMPAERHYRDARITEIYEGTSEVQHLVIAGKILKEY 422
            +AA    RG              R + + ++LPEE+  +R+M RSFAD EL PNA +WD+ H FP DQ+  +GE+GLMGV++ EE GG G+DY+AYAIA+EE+SRGCASTGVI SVNNSLYC PIE FG+  QK E L P+ASGA++GCF LSEPGNGSDAGAA TTA L GD+++L+G+KAWITNAH+A ++IVFATTD S KHKGISAFIVP +TPG ++GKKEDKLGIRASSTA L  E  +VPKANLLG  GMGF+IAM TLD+GRIGIA QALGIA A+L+CAVKYS +RK+FGQPI  +YAIQ K+S+M+  L++ARLLTW+AA  +DAGE+Y KEAAMAKL ASE +T  +H AIQVLGGMGYVS+MPAERHYRDARITEIYEGTSE+QH+VIAG ++KEY
Sbjct:    4 TAAAAAARGAKTSRSVGCRVAGGRGFLTWNSLPEEHTMLRDMCRSFADNELAPNAGEWDKNHAFPKDQVAQLGELGLMGVAISEEDGGTGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYCAPIEKFGSPEQKDEHLKPFASGASLGCFALSEPGNGSDAGAARTTARLEGDQWVLDGTKAWITNAHDAQSSIVFATTDSSKKHKGISAFIVPLETPGMSLGKKEDKLGIRASSTANLIMEGCRVPKANLLGEEGMGFKIAMGTLDAGRIGIAGQALGIAAASLDCAVKYSMERKSFGQPICGLYAIQSKISEMSMKLDAARLLTWKAAAARDAGENYTKEAAMAKLFASETATFCSHAAIQVLGGMGYVSEMPAERHYRDARITEIYEGTSEIQHMVIAGSVVKEY 411
[Close]
BLAST of NO17G02720 vs. NCBI_GenBank
Match: XP_005055281.1 (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial [Ficedula albicollis])

HSP 1 Score: 547.0 bits (1408), Expect = 5.200e-152
Identity = 275/404 (68.07%), Postives = 333/404 (82.43%), Query Frame = 0 
Query:   20 QRGGVAGSKRTLAATDVRAYT--SVSTLPEEYRSIREMVRSFADTELVPNAAKWDQEHTFPADQIKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPIEAFGTEAQKKEWLAPYASGANVGCFGLSEPGNGSDAGAASTTAVLHGDEYILNGSKAWITNAHEASAAIVFATTDKSLKHKGISAFIVPRDTPGFTVGKKEDKLGIRASSTATLTFEDVKVPKANLLGASGMGFRIAMVTLDSGRIGIAAQALGIAQAALECAVKYSKDRKAFGQPISKMYAIQLKLSQMASALESARLLTWRAAQLKDAGEDYVKEAAMAKLQASEASTMVAHQAIQVLGGMGYVSDMPAERHYRDARITEIYEGTSEVQHLVIAGKILKEY 422
            +R    GS+  LA    R +T    + LPE ++ +R+ VR FA+ EL+P AA+ D+EH FPA+Q+K +G +GL+ + VPE+Y GAG+DY+AY+IA+EE+SRGCASTGVI SVNNSLY GPI  FG+E QK +W+AP+ SG  +GCF LSEPGNGSDAGAAST A L GDE++LNG+KAWITNA +ASA +VFATTDKSLKHKGISAF+VP  TPG ++GKKEDKLGIRASSTA L FED ++PKANLLG  GMGF+IAM TLD GRIGIA+QALGIAQAAL+CAV Y++ R AFG PI+K+ A+Q KL+ MA ALE ARLLTWRAA LKD G+ + KEAAMAKL ASEA+T +AHQAIQ+LGGMGYV++MPAERHYRDARITEIYEGTSE+Q LVIAG++LK Y
Sbjct:   58 ERAAAVGSRPALALRCRRLHTVYQSAELPETHQMLRQTVRDFAEKELMPLAAQLDKEHRFPAEQVKKMGALGLLAMDVPEKYKGAGLDYLAYSIAVEEISRGCASTGVIVSVNNSLYLGPILKFGSEEQKHQWIAPFTSGEKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQPGMGFKIAMQTLDGGRIGIASQALGIAQAALDCAVDYAEKRMAFGSPITKLQAVQFKLADMAVALEGARLLTWRAAMLKDNGKPFTKEAAMAKLAASEAATSIAHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGQLLKAY 461
[Close]
BLAST of NO17G02720 vs. NCBI_GenBank
Match: OPJ74753.1 (short-chain specific acyl-CoA dehydrogenase, mitochondrial [Patagioenas fasciata monilis])

HSP 1 Score: 547.0 bits (1408), Expect = 5.200e-152
Identity = 280/412 (67.96%), Postives = 339/412 (82.28%), Query Frame = 0 
Query:   14 SAALFLQRGGVAGSKRTLAATDVR----AYTSVSTLPEEYRSIREMVRSFADTELVPNAAKWDQEHTFPADQIKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPIEAFGTEAQKKEWLAPYASGANVGCFGLSEPGNGSDAGAASTTAVLHGDEYILNGSKAWITNAHEASAAIVFATTDKSLKHKGISAFIVPRDTPGFTVGKKEDKLGIRASSTATLTFEDVKVPKANLLGASGMGFRIAMVTLDSGRIGIAAQALGIAQAALECAVKYSKDRKAFGQPISKMYAIQLKLSQMASALESARLLTWRAAQLKDAGEDYVKEAAMAKLQASEASTMVAHQAIQVLGGMGYVSDMPAERHYRDARITEIYEGTSEVQHLVIAGKILKEY 422
            +AA FL RGG  G+ R LA   +R     Y SV  LPE ++ +R+  R FA+ EL+P AA+ D+EH FPA+Q+K +G +GL+ + VPE Y G+G+DY+AY+IA+EE+SRGCASTGVI SVNNSLY GPI  FG+E QK +W+AP+ SG  +GCF LSEPGNGSDAGAAST A L GDE++LNG+KAWITNA +ASA +VFATTDKSLKHKGISAF+VP  TPG ++GKKEDKLGIRASSTA L FED ++PKANLLG  GMGF+IAM TLD+GRIGIA+QALGIAQAA++CAV Y++ R AFG PI+K+ A+Q KL+ MA ALE ARLLTWRAA LKD G+ + KEAAMAKL ASEA+T +AHQAIQ+LGGMGYV++MPAERHYRDARITEIYEGTSE+Q LVIAG++LK Y
Sbjct:    2 AAAAFLARGG--GTPRALAFGCLRRLHTVYQSVE-LPETHQMLRQTCRDFAEKELMPLAAQLDREHRFPAEQVKKMGGLGLLAMDVPEAYKGSGLDYLAYSIAVEEISRGCASTGVIVSVNNSLYLGPILKFGSEEQKHQWIAPFTSGDKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQLGMGFKIAMQTLDAGRIGIASQALGIAQAAMDCAVDYAEKRMAFGSPITKLQAVQFKLADMAVALEGARLLTWRAAMLKDNGKPFTKEAAMAKLAASEAATAIAHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGQVLKAY 410
[Close]
BLAST of NO17G02720 vs. NCBI_GenBank
Match: XP_005288726.1 (short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X1 [Chrysemys picta bellii])

HSP 1 Score: 546.6 bits (1407), Expect = 6.800e-152
Identity = 278/409 (67.97%), Postives = 334/409 (81.66%), Query Frame = 0 
Query:   15 AALFLQRGGVAGSKRTLAATDVRAYTSVST--LPEEYRSIREMVRSFADTELVPNAAKWDQEHTFPADQIKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPIEAFGTEAQKKEWLAPYASGANVGCFGLSEPGNGSDAGAASTTAVLHGDEYILNGSKAWITNAHEASAAIVFATTDKSLKHKGISAFIVPRDTPGFTVGKKEDKLGIRASSTATLTFEDVKVPKANLLGASGMGFRIAMVTLDSGRIGIAAQALGIAQAALECAVKYSKDRKAFGQPISKMYAIQLKLSQMASALESARLLTWRAAQLKDAGEDYVKEAAMAKLQASEASTMVAHQAIQVLGGMGYVSDMPAERHYRDARITEIYEGTSEVQHLVIAGKILKEY 422
            AA  L RGG A ++        + +T   T  LPE ++ +R+  R FA+ ELVP AA+ D+EH FPA+Q+K +G +GL+ + VPEEY GAG+DY+AY+IA+EE+SRGCASTGV+ SVNNSLY GPI  FG+E QK +W+AP+ SG  +GCF LSEPGNGSDAGAAST A L G+E++LNG+KAWITNA +ASA +VFATTDKS KHKGISAF+VP  TPG ++GKKEDKLGIRASSTA L FED ++PKANLLG  GMGF+IAM TLDSGRIGIA+QALGIAQ AL+CAV Y++ R AFG PISK+ AIQ KL+ MA ALE ARLLTWRAA LKD G+ Y KEAAMAKL ASEA+T ++HQAIQ+LGGMGYV++MPAERHYRDARITEIYEGTSE+Q LVIAG++LKEY
Sbjct:    2 AATLLARGGGAAARALTFGCLRQLHTVYQTVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHRFPAEQVKKMGALGLLAMDVPEEYKGAGLDYLAYSIAVEEISRGCASTGVVMSVNNSLYLGPILKFGSEEQKHQWIAPFTSGDKIGCFALSEPGNGSDAGAASTVARLDGNEWVLNGTKAWITNAWDASAVVVFATTDKSQKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQQGMGFKIAMQTLDSGRIGIASQALGIAQGALDCAVDYAEKRLAFGSPISKLQAIQFKLADMALALEGARLLTWRAAMLKDNGKPYTKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGQLLKEY 410
[Close]
BLAST of NO17G02720 vs. NCBI_GenBank
Match: XP_006259210.2 (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X1 [Alligator mississippiensis] >KYO31685.1 short-chain specific acyl-CoA dehydrogenase, mitochondrial [Alligator mississippiensis])

HSP 1 Score: 546.6 bits (1407), Expect = 6.800e-152
Identity = 281/410 (68.54%), Postives = 335/410 (81.71%), Query Frame = 0 
Query:   15 AALFLQRGGVA--GSKRTLAATDVRAYTSV-STLPEEYRSIREMVRSFADTELVPNAAKWDQEHTFPADQIKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPIEAFGTEAQKKEWLAPYASGANVGCFGLSEPGNGSDAGAASTTAVLHGDEYILNGSKAWITNAHEASAAIVFATTDKSLKHKGISAFIVPRDTPGFTVGKKEDKLGIRASSTATLTFEDVKVPKANLLGASGMGFRIAMVTLDSGRIGIAAQALGIAQAALECAVKYSKDRKAFGQPISKMYAIQLKLSQMASALESARLLTWRAAQLKDAGEDYVKEAAMAKLQASEASTMVAHQAIQVLGGMGYVSDMPAERHYRDARITEIYEGTSEVQHLVIAGKILKEY 422
            A L  +RGG A  G    L A   R +T+  + LPE +R +R   R FA+ ELVP AA+ D+EH FPA Q+K +G +GL+ + VPEEY GAG+DY+AY+IA+EE+SRGCASTGVI SVNNSLY GPI  FG+E QK +W+ P+ SG  +GCF LSEPGNGSDAGAAST A L GDE+ILNG+KAWITNA +ASA +VFATTDKS KHKGISAF+VP  TPG ++GKKEDKLGIRASSTA L FED ++PKANLLG  GMGF+IAM TLD+GRIGIA+QALGIAQAAL+CAV Y++ R AFG PI+K+ AIQ KL+ MA ALESARLLTWRAA LKD G+ + KEAAMAKL ASEA+T ++HQAIQ+LGGMGYV++MPAERHYRDARITEIYEGTSE+Q LVIAG++L+EY
Sbjct:    3 ATLVSRRGGSAARGLALALGALRRRQHTAAPAELPETHRLLRRTCRDFAERELVPEAARLDREHRFPAAQVKKMGALGLLAMDVPEEYSGAGLDYLAYSIAVEEISRGCASTGVIMSVNNSLYLGPILKFGSEEQKHKWITPFTSGDKIGCFALSEPGNGSDAGAASTVASLDGDEWILNGTKAWITNAWDASAVVVFATTDKSQKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQLGMGFKIAMQTLDTGRIGIASQALGIAQAALDCAVDYAEKRVAFGSPITKLQAIQFKLADMALALESARLLTWRAAMLKDNGKPFTKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGQLLREY 412
[Close]
BLAST of NO17G02720 vs. NCBI_GenBank
Match: XP_015499090.1 (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial [Parus major])

HSP 1 Score: 546.6 bits (1407), Expect = 6.800e-152
Identity = 275/398 (69.10%), Postives = 331/398 (83.17%), Query Frame = 0 
Query:   26 GSKRTLAATDVRAYT--SVSTLPEEYRSIREMVRSFADTELVPNAAKWDQEHTFPADQIKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPIEAFGTEAQKKEWLAPYASGANVGCFGLSEPGNGSDAGAASTTAVLHGDEYILNGSKAWITNAHEASAAIVFATTDKSLKHKGISAFIVPRDTPGFTVGKKEDKLGIRASSTATLTFEDVKVPKANLLGASGMGFRIAMVTLDSGRIGIAAQALGIAQAALECAVKYSKDRKAFGQPISKMYAIQLKLSQMASALESARLLTWRAAQLKDAGEDYVKEAAMAKLQASEASTMVAHQAIQVLGGMGYVSDMPAERHYRDARITEIYEGTSEVQHLVIAGKILKEY 422
            G+ R LA    R +T    + LPE ++ +RE VR FA+ EL+P AA+ D+EH FPA+Q+K +G +GL+ + VPE+Y GAG+DY+AY+IA+EE+SRGCASTGVI SVNNSLY GPI  FG+E QK +W+AP+ SG  +GCF LSEPGNGSDAGAAST A L GDE++LNG+KAWITNA +ASA +VFATTDKSLKHKGISAF+VP  TPG ++GKKEDKLGIRASSTA L FED ++PKANLLG  GMGF+IAM TLD GRIGIA+QALGIAQAAL+CAV Y++ R AFG PI+K+ A+Q KL+ MA ALE ARLLTWRAA LKD G+ + KEAAMAKL ASEA+T +AHQAIQ+LGGMGYV++MPAERHYRDARITEIYEGTSE+Q LVIAG++LK Y
Sbjct:   17 GASRALALRCRRLHTVYQSAELPETHQMLRETVRDFAEKELMPLAAQLDKEHRFPAEQVKKMGGLGLLAMDVPEKYKGAGLDYLAYSIAVEEISRGCASTGVIVSVNNSLYLGPILKFGSEEQKHQWIAPFTSGEKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQPGMGFKIAMQTLDGGRIGIASQALGIAQAALDCAVDYAEKRMAFGSPITKLQAVQFKLADMAVALEGARLLTWRAAMLKDNGKPFTKEAAMAKLAASEAATSIAHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGQLLKAY 414
[Close]
BLAST of NO17G02720 vs. NCBI_GenBank
Match: XP_005524498.2 (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial [Pseudopodoces humilis])

HSP 1 Score: 546.2 bits (1406), Expect = 8.900e-152
Identity = 275/398 (69.10%), Postives = 331/398 (83.17%), Query Frame = 0 
Query:   26 GSKRTLAATDVRAYT--SVSTLPEEYRSIREMVRSFADTELVPNAAKWDQEHTFPADQIKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPIEAFGTEAQKKEWLAPYASGANVGCFGLSEPGNGSDAGAASTTAVLHGDEYILNGSKAWITNAHEASAAIVFATTDKSLKHKGISAFIVPRDTPGFTVGKKEDKLGIRASSTATLTFEDVKVPKANLLGASGMGFRIAMVTLDSGRIGIAAQALGIAQAALECAVKYSKDRKAFGQPISKMYAIQLKLSQMASALESARLLTWRAAQLKDAGEDYVKEAAMAKLQASEASTMVAHQAIQVLGGMGYVSDMPAERHYRDARITEIYEGTSEVQHLVIAGKILKEY 422
            G+ R LA    R +T    + LPE ++ +RE VR FA+ EL+P AA+ D+EH FPA+Q+K +G +GL+ + VPE+Y GAG+DY+AY+IA+EE+SRGCASTGVI SVNNSLY GPI  FG+E QK +W+AP+ SG  +GCF LSEPGNGSDAGAAST A L GDE++LNG+KAWITNA +ASA +VFATTDKSLKHKGISAF+VP  TPG ++GKKEDKLGIRASSTA L FED ++PKANLLG  GMGF+IAM TLD GRIGIA+QALGIAQAAL+CAV Y++ R AFG PI+K+ A+Q KL+ MA ALE ARLLTWRAA LKD G+ + KEAAMAKL ASEA+T +AHQAIQ+LGGMGYV++MPAERHYRDARITEIYEGTSE+Q LVIAG++LK Y
Sbjct:   15 GASRALALRCRRLHTVYQSAELPETHQMLRETVRDFAEKELMPLAAQLDKEHRFPAEQVKKMGGLGLLAMDVPEKYKGAGLDYLAYSIAVEEISRGCASTGVIVSVNNSLYLGPILKFGSEEQKHQWIAPFTSGEKIGCFALSEPGNGSDAGAASTMARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQPGMGFKIAMQTLDGGRIGIASQALGIAQAALDCAVDYAEKRMAFGSPITKLQAVQFKLADMAVALEGARLLTWRAAMLKDNGKPFTKEAAMAKLAASEAATSIAHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGQLLKAY 412
[Close]
BLAST of NO17G02720 vs. NCBI_GenBank
Match: KFW82501.1 (hypothetical protein N305_04685, partial [Manacus vitellinus])

HSP 1 Score: 545.0 bits (1403), Expect = 2.000e-151
Identity = 269/377 (71.35%), Postives = 322/377 (85.41%), Query Frame = 0 
Query:   45 LPEEYRSIREMVRSFADTELVPNAAKWDQEHTFPADQIKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPIEAFGTEAQKKEWLAPYASGANVGCFGLSEPGNGSDAGAASTTAVLHGDEYILNGSKAWITNAHEASAAIVFATTDKSLKHKGISAFIVPRDTPGFTVGKKEDKLGIRASSTATLTFEDVKVPKANLLGASGMGFRIAMVTLDSGRIGIAAQALGIAQAALECAVKYSKDRKAFGQPISKMYAIQLKLSQMASALESARLLTWRAAQLKDAGEDYVKEAAMAKLQASEASTMVAHQAIQVLGGMGYVSDMPAERHYRDARITEIYEGTSEVQHLVIAGKILKEY 422
            LPE ++ +RE VR FA+ EL+P AA+ D+EH FPA+Q+K +G +GL+ + VPE+Y GAG+DY+AY+IA+EE+SRGCASTGVI SVNNSLY GPI  FG+E QK +W+AP+ SG  +GCF LSEPGNGSDAGAAST A L GDE++LNG+KAWITNA +ASA +VFATTDKSLKHKGISAF+VP  TPG ++GKKEDKLGIRASSTA L FED ++PKANLLG  GMGF+IAM TLD GRIGIA+QALGIAQAAL+CAV Y++ R AFG PI+K+ A+Q KL+ MA ALE ARLLTWRAA LKD G+ + KEAAMAKL ASEA+T +AHQAIQ+LGGMGYV++MPAERHYRDARITEIYEGTSE+Q LVIAG++LK Y
Sbjct:   12 LPETHQMLRETVRDFAEKELMPLAAQLDKEHRFPAEQVKKMGSLGLLAMDVPEKYKGAGLDYLAYSIAVEEISRGCASTGVIVSVNNSLYLGPILKFGSEEQKHKWIAPFTSGEKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQPGMGFKIAMQTLDGGRIGIASQALGIAQAALDCAVDYAEKRMAFGSPITKLQAVQFKLADMAVALEGARLLTWRAAMLKDNGKPFTKEAAMAKLAASEAATAIAHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGQLLKAY 388
[Close]
BLAST of NO17G02720 vs. NCBI_GenBank
Match: XP_014750121.1 (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X1 [Sturnus vulgaris])

HSP 1 Score: 545.0 bits (1403), Expect = 2.000e-151
Identity = 278/409 (67.97%), Postives = 337/409 (82.40%), Query Frame = 0 
Query:   15 AALFLQRGGVAGSKRTLAATDVRAYT--SVSTLPEEYRSIREMVRSFADTELVPNAAKWDQEHTFPADQIKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPIEAFGTEAQKKEWLAPYASGANVGCFGLSEPGNGSDAGAASTTAVLHGDEYILNGSKAWITNAHEASAAIVFATTDKSLKHKGISAFIVPRDTPGFTVGKKEDKLGIRASSTATLTFEDVKVPKANLLGASGMGFRIAMVTLDSGRIGIAAQALGIAQAALECAVKYSKDRKAFGQPISKMYAIQLKLSQMASALESARLLTWRAAQLKDAGEDYVKEAAMAKLQASEASTMVAHQAIQVLGGMGYVSDMPAERHYRDARITEIYEGTSEVQHLVIAGKILKEY 422
            AA+  + GG  G+ R LA    R +T    + LPE ++ +R+ VR FA+ EL+P AA+ D+EH FPA+Q+K +G +GL+ + VPE+Y GAG+DY+AY+IA+EE+SRGCASTGVI SVNNSLY GPI  FG+E QK +W+AP+ SG  +GCF LSEPGNGSDAGAAST A L GDE++LNG+KAWITNA +ASA +VFATTDKSLKHKGISAF+VP  TPG ++GKKEDKLGIRASSTA L FED ++PKANLLG  GMGF+IAM TLD GRIGIA+QALGIAQAAL+CAV Y++ R AFG PI+K+ A+Q KL+ MA ALE ARLLTWRAA LKD G+ + KEAAMAKL ASEA+T +AHQAIQ+LGGMGYV++MPAERHYRDARITEIYEGTSE+Q LVIAG++LK Y
Sbjct:    7 AAVVSRCGG--GAPRALALRCRRLHTVYQSAELPETHQMLRQTVRDFAEKELMPLAAQLDKEHRFPAEQVKKMGGLGLLAMDVPEKYKGAGLDYLAYSIAVEEISRGCASTGVIVSVNNSLYLGPILKFGSEEQKHQWIAPFTSGEKIGCFALSEPGNGSDAGAASTMARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQPGMGFKIAMQTLDGGRIGIASQALGIAQAALDCAVDYAEKRMAFGSPITKLQAVQFKLADMAVALEGARLLTWRAAMLKDNGKPFTKEAAMAKLAASEAATSIAHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGQLLKAY 413
[Close]
BLAST of NO17G02720 vs. NCBI_GenBank
Match: XP_017669693.1 (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial [Lepidothrix coronata])

HSP 1 Score: 545.0 bits (1403), Expect = 2.000e-151
Identity = 269/377 (71.35%), Postives = 322/377 (85.41%), Query Frame = 0 
Query:   45 LPEEYRSIREMVRSFADTELVPNAAKWDQEHTFPADQIKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPIEAFGTEAQKKEWLAPYASGANVGCFGLSEPGNGSDAGAASTTAVLHGDEYILNGSKAWITNAHEASAAIVFATTDKSLKHKGISAFIVPRDTPGFTVGKKEDKLGIRASSTATLTFEDVKVPKANLLGASGMGFRIAMVTLDSGRIGIAAQALGIAQAALECAVKYSKDRKAFGQPISKMYAIQLKLSQMASALESARLLTWRAAQLKDAGEDYVKEAAMAKLQASEASTMVAHQAIQVLGGMGYVSDMPAERHYRDARITEIYEGTSEVQHLVIAGKILKEY 422
            LPE ++ +RE VR FA+ EL+P AA+ D+EH FPA+Q+K +G +GL+ + VPE+Y GAG+DY+AY+IA+EE+SRGCASTGVI SVNNSLY GPI  FG+E QK +W+AP+ SG  +GCF LSEPGNGSDAGAAST A L GDE++LNG+KAWITNA +ASA +VFATTDKSLKHKGISAF+VP  TPG ++GKKEDKLGIRASSTA L FED ++PKANLLG  GMGF+IAM TLD GRIGIA+QALGIAQAAL+CAV Y++ R AFG PI+K+ A+Q KL+ MA ALE ARLLTWRAA LKD G+ + KEAAMAKL ASEA+T +AHQAIQ+LGGMGYV++MPAERHYRDARITEIYEGTSE+Q LVIAG++LK Y
Sbjct:  221 LPETHQMLRETVRDFAEKELMPLAAQLDKEHRFPAEQVKKMGSLGLLAMDVPEKYKGAGLDYLAYSIAVEEISRGCASTGVIVSVNNSLYLGPILKFGSEEQKHKWIAPFTSGEKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASATVVFATTDKSLKHKGISAFLVPMPTPGLSLGKKEDKLGIRASSTANLIFEDCRIPKANLLGQPGMGFKIAMQTLDGGRIGIASQALGIAQAALDCAVDYAEKRMAFGSPITKLQAVQFKLADMAVALEGARLLTWRAAMLKDNGKPFTKEAAMAKLAASEAATAIAHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGQLLKAY 597
The following BLAST results are available for this feature:
BLAST of NO17G02720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN78251.12.400e-15267.16acyl-CoA dehydrogenase [Ectocarpus siliculosus][more]
XP_005055281.15.200e-15268.07PREDICTED: short-chain specific acyl-CoA dehydroge... [more]
OPJ74753.15.200e-15267.96short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
XP_005288726.16.800e-15267.97short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
XP_006259210.26.800e-15268.54PREDICTED: short-chain specific acyl-CoA dehydroge... [more]
XP_015499090.16.800e-15269.10PREDICTED: short-chain specific acyl-CoA dehydroge... [more]
XP_005524498.28.900e-15269.10PREDICTED: short-chain specific acyl-CoA dehydroge... [more]
KFW82501.12.000e-15171.35hypothetical protein N305_04685, partial [Manacus ... [more]
XP_014750121.12.000e-15167.97PREDICTED: short-chain specific acyl-CoA dehydroge... [more]
XP_017669693.12.000e-15171.35PREDICTED: short-chain specific acyl-CoA dehydroge... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02720.1NO17G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674062gene_9341Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100407g1gene6311Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02720.1NO17G02720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02720 ID=NO17G02720|Name=NO17G02720|organism=Nannochloropsis oceanica|type=gene|length=3340bp
GAAAAAAGGAAACTATGTTATACAAACTCGCTGCGGCAGCAGGTCTCCAA
AGTTTCTCAATTACTGGGGCCGTTGGAATCACCATCGCCGTCGTCGTCTT
CCGCCGCCGAGGCAGAAGCAACATGAAGTCACCGACGGACCTTCAACCCC
GGTGAACGCTGCGGTTCCCCGCGTGTGCGCGAGAGGGTTTGTTCGTCTTC
GTCCTTGGAAATGCTGGGCACGTCTGCCGGTGCTTTATGGTTGTCCCCGC
TCTGTCGCCCCAACACGCTGACGATGCTGATGACGAGACCTCGCCCACCA
TAACTCCTTCAGCAGGTCAGACCTCCTAAACAACCTCGAGCACACTATTC
CCAAACCAACGTACGAATCATGAGGATGCTCTGCAGCAGCGTGGTGGGCC
GACGTACATCAGCAGCTCTCTTCTTGCAGCGCGGCGGCGTGGCCGGCTCC
AAGCGAACCCTGGCTGCCACGGACGTAAGAGgtacgtcctgcacttttat
ccccaactctcttcgtcatcgctgctgtccgtcgctcgtttgctgtgagg
atatattagggtcggctacggcgtctcttagtgagggaagttacgttctg
tgcttctccccgtcccactcatgccttcctccctccctcccctttcccct
tgccacctttccccgcagCCTACACCAGCGTGAGCACCCTGCCAGAGGAA
TACAGGTCCATCCGCGAGATGGTTCGATCGTTCGCAGACACAGAATTGGT
TCCTAATGCCGCCAAGTGGGATCAAGAGCACACTTTTCCGGCTGACCAGg
tgggtttctagctgctatgtatttcctgctttcgaggcctccctccctcc
ctccctccctcccttccgagagccgtatacttgaccgctctatccttcct
cccttcctccctcccttcccctagATCAAAGCCATTGGCGAGATGGGTCT
TATGGGTGTGTCGGTGCCCGAGGAGTACGGAGGGGCAGGGATGGACTACA
TGGCCTATGCCATCGCGATTGAAGAGCTCAGCCGCGGTTGCGCGTCCACG
GGGgtacgttcttccctccctccctcccttcctccctcccttccttcctt
cctcctccactgctttcctcttttttgtcgcttgccgagtcctcctcact
tactccgtgatccctccctcccgccctccctcccgccctccctccctccc
tccctccctccctcagGTCATCGCCAGCGTGAACAACTCGCTGTACTGCG
GCCCCATTGAGGCGTTCGGCACAGAGGCTCAGAAGAAGGAGTGgtaagtc
caaattatccctcgcttcctctatccctccttccctccctccctccaacc
ttccctccctccctcacccctccctccgtagGCTGGCCCCCTACGCCTCT
GGTGCCAATGTCGGTTGCTTTGGTCTGTCGGAGCCGGGGAATGGGAGCGA
TGCCGGCGCTGCCTCCACCACGGCAGTATTACACGGAGATGAGTACATTC
TGAACGGAAGCAAGGCCTGGATTACCAACGCCCACGAGGCGAGCGCGGCC
ATCGTCTTTGCCACCACTGATAAAAGCCTGAAGCATAAAGgtaggtaggc
ggtttttttccttcctccctccctccctccctccctccctccctcccact
atccttcaggcatcggagcgtttctggtaataaccccggtcctccctccc
tccctccttcaatccctcagGTATCTCCGCCTTCATCGTTCCTCGGGACA
CCCCCGGCTTCACGGTGGGAAAGAAGGAGGACAAGCTGGGCATTCGCGCC
TCTTCCACGGCTACCCTCACCTTCGAAGATGTCAAGGTTCCCAAGgcaag
ccttccctccctccctccctccctccctccctccctccatccatccttgt
gttgttcttctttccttgtccatgactccatcgagctcgagctctcagtg
cttattcccctcccttccactccctccctccccctccctccctccctccc
tccctcccttcttccctcctatggttgctctcgacagcggtcgtatcaca
tctcatggtcaatgctcacaccccaccctccctccctccctccctccctc
cctccagGCTAACCTGCTGGGGGCCTCGGGCATGGGCTTCCGTATTGCGA
TGGTCACCCTCGACAGTGGCCGTATTGGGATCGCGGCCCAAGCCCTCGGC
ATCGCACAGGCAGCTCTTGAGgtatgcagccctccctccctccttccctt
cctccctccctccctcccgtgtttctcggtagtggtgatggatgacaggc
acagcccgagacgtgagccgtcaggggcccttgtcggagaaagaaaaaga
agaagggagggagggaggggacgctcagggaaggccgtctgagtcgaaat
cggacccaacgattactgagttccgatctcaccccccccctccctccctc
cctccctccctccctccagTGTGCCGTCAAATACTCCAAGGACCGCAAGG
CCTTCGGGCAGCCCATCTCTAAAATGTATGCCATCCAACTTAAACTCTCC
CAAATGGCCAGCGCCCTCGgtacgtcctccctccctccctccttcccacc
ctcccacgccccccttccctctccctccgttttctctcatgttatcgtct
cgtcctcccctccctccctccctccctcccttcctcccttcccagAGAGT
GCCCGCCTCTTGACATGGCGTGCGGCTCAACTCAAGGACGCGGGCGAGGA
TTACGTGAAGGAGgtacgccgcccctccctccctccctttctccctccct
cctcccctcccttcctccctcccgccttcctcccacctgcctggaacctt
ccggatagcaggaaatgacgctccttcctcccaaccccccctcccttcct
ccccccccccaccctcctgtagGCGGCCATGGCCAAGCTCCAGGCGTCCG
AGGCCTCCACGATGGTGGCCCATCAGGCGATTCAAGTGCTGGGAGGTATG
GGTTATGTCAGCGATATGCCCGCCGAGCGGCATTACCGCGATGCCCGCAT
CACTGgtgcgtcccctccctccctcccttgcatgagggcgtctcgtcgtt
ccttcggctttacacagctccttcgttttcgctcacctacactactctgc
cctccctctctccctccctctcgcagAGATTTATGAGGGTACGTCCGAGG
TGCAGCATTTGGTCATTGCCGGGAAGATCCTCAAGGAGTACGAGTAGGGA
GGGAGGAAGGGAGGGAGGGAGGGGGAGGGAGGCTGTATAGGTGCGGATAG
CAGCAGATCGGAGAGAGTACTGATTGGGATTGGGGAGGGA
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protein sequence of NO17G02720.1

>NO17G02720.1-protein ID=NO17G02720.1-protein|Name=NO17G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MRMLCSSVVGRRTSAALFLQRGGVAGSKRTLAATDVRAYTSVSTLPEEYR
SIREMVRSFADTELVPNAAKWDQEHTFPADQIKAIGEMGLMGVSVPEEYG
GAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPIEAFGTEAQKKEW
LAPYASGANVGCFGLSEPGNGSDAGAASTTAVLHGDEYILNGSKAWITNA
HEASAAIVFATTDKSLKHKGISAFIVPRDTPGFTVGKKEDKLGIRASSTA
TLTFEDVKVPKANLLGASGMGFRIAMVTLDSGRIGIAAQALGIAQAALEC
AVKYSKDRKAFGQPISKMYAIQLKLSQMASALESARLLTWRAAQLKDAGE
DYVKEAAMAKLQASEASTMVAHQAIQVLGGMGYVSDMPAERHYRDARITE
IYEGTSEVQHLVIAGKILKEYE*
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Synonyms
Publications