NO17G02550.1, NO17G02550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02550.1
Unique NameNO17G02550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length723
Alignment locationchr17:752140..753841 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:752140..753841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02550.1 vs.
Match: XP_018562517.1 (box C/D snoRNA protein 1 [Anoplophora glabripennis])

HSP 1 Score: 86.7 bits (213), Expect = 1.100e-13
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0 
Query:   64 KKREDTSARGTSP-LPPCQVCNAQPRVYRCPRCALKTCSLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFLEEVINSTQAAKRKFGK 158
            K    TS+ GTS  L  C+VC      Y CPRC +KTCSL C K+HK++  C G+R+    +PL++FT+  L +DY  LEE+  S +A+++KFGK
Sbjct:   11 KVEPSTSSAGTSSKLGVCEVCAFHDAKYTCPRCEVKTCSLKCNKIHKLEIECDGQRDRTKFIPLNKFTNLDLSSDYRLLEEITRSVEASRKKFGK 105
The following BLAST results are available for this feature:
BLAST of NO17G02550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700SequenceXP_018562517.1
Match NameE-valueIdentityDescription
XP_018562517.11.100e-1345.26box C/D snoRNA protein 1 [Anoplophora glabripennis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02550NO17G02550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02550.1NO17G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02550.1.cds1NO17G02550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02550.1.cds2NO17G02550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02550.1.cds3NO17G02550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02550.1.cds4NO17G02550.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02550.1.cds5NO17G02550.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02550.1.cds6NO17G02550.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02550.1 ID=NO17G02550.1|Name=NO17G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=723bp
ATGCCAACGATCACCAGCACTGCGGTTGTACCAGCAGGGGAAGGAAGTGA
CAGCATAGCCATTACCACGCTTTCATCGAGTGTGGACTCCGCCGCTGCCT
CCTGTACCCAGCTTAACATGCGAGACAGGATGGAGATGGACAGCGATGTT
CGAGGCTCAGGTGCCCGGGAGGAGGAGGACGACAACGACAAGAAGAGGGA
GGATACGTCAGCTAGGGGTACCTCACCTCTCCCACCTTGCCAAGTCTGCA
ACGCCCAGCCCCGCGTTTATCGCTGTCCACGATGCGCCCTTAAGACATGC
TCGCTTGTCTGCTGTAAGCTACACAAGGTCAAGACGGGGTGCACCGGCCG
TCGGGAGTACTTCACCCACGTGCCGTTGAGCCAATTTACCGACGACCAGC
TCCGAGCAGACTACTTTTTCCTTGAGGAGGTGATAAACAGTACCCAGGCC
GCCAAACGAAAATTCGGCAAGAGCTCCGGAGGAGGGGGGAGAGGAAGGGG
GGGAGGCAGGGGCGAGAAGAAACCGAGAAGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGGGGAGGGGGGAAAGCGCTTCAGTCGGATGCCCTCCCTCCC
TCCGACCATCTAAACAGTCTTGCTAAGCGCGCATACGTCTCCATGGGCCT
CTCGAGCGATTATCTCTCCGCTTATCCCCCCCCCAACAGCGCCTGGTGGC
CGAGGCGCGGAAACGGGGCGTAG
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protein sequence of NO17G02550.1

>NO17G02550.1-protein ID=NO17G02550.1-protein|Name=NO17G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MPTITSTAVVPAGEGSDSIAITTLSSSVDSAAASCTQLNMRDRMEMDSDV
RGSGAREEEDDNDKKREDTSARGTSPLPPCQVCNAQPRVYRCPRCALKTC
SLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFLEEVINSTQA
AKRKFGKSSGGGGRGRGGGRGEKKPRRGGGGGGGGGGGGGKALQSDALPP
SDHLNSLAKRAYVSMGLSSDYLSAYPPPNSAWWPRRGNGA*
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mRNA from alignment at chr17:752140..753841+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02550.1 ID=NO17G02550.1|Name=NO17G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp|location=Sequence derived from alignment at chr17:752140..753841+ (Nannochloropsis oceanica)
ATGCCAACGATCACCAGCACTGCGGTTGTACCAGCAGGGGAAGGAAGTGA
CAGCATAGCCATTACCACGCTTTCATCGAGTGTGGACTCCGCCGCTGCCT
CCTGTACCCAGCTTAACATGCGAGACAGGATGGAGATGGACAGCGATGTT
CGAGGTATGGCAGGTGCTATCCCTCTCCGTCATGCTCATCATCCCTCTCA
TCCTCTCTTTCTTTGACCGAGATGTGAGCTCCTTCCTCCATGCCCTCAGC
CCATCCATCCCTTCCTTCTTCCTCTCTTCGACACTCCAACGAGGGCCAAA
CGACAATGACATATTGATTCTTACAGCCATCTCAGCCCCCCACCCCTTGC
CCCATGAAAATCCCTTGTTCCCGCCCGCTCAACCACTCTTCCCCTTCGTA
CTGCATCCCCCTCTCGCGCTTCGACAGGCTCAGGTGCCCGGGAGGAGGAG
GACGACAACGACAAGAAGAGGGAGGATACGTCAGCTAGGGGTACCTCACC
TCTCCCACCTTGCCAAGTCTGCAACGCCCAGCCCCGCGTTTATCGCTGTC
CACGATGCGCCCTTAAGACATGCTCGCTTGTCTGCTGTAAGCTACACAAG
GTCAAGGTACGGGCCGCGAGAGAGGGAGGGAGGGAGGGAGGGAGGGTGCA
TGCCTTCTGACCCGCATAGCGTATCTCGCTCTTGGAAATCCATTGTCTTC
CTTCTCTCCCTCCCTTCTCATCACCTCTTTAGACGGGGTGCACCGGCCGT
CGGGAGTACTTCACCCACGTGCCGTTGAGCCAATTTACCGACGACCAGCT
CCGAGCAGGTCCGTGCCCCTCCCTCCTCTCCGCCCTCCCTCCCTCCCACC
CTCCCTCCCGTCATCCTCTTCTCGGCCCTTGTACACCCTCTCCTTCTCTT
TCTCTTGAAATCTCCTTTTCTCATTTCCCTTCTGAGTATGTACATGCCGT
CATCCCTCCTCAAACCTTGATTCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCAGACTACTTTTTCCTTGAGGAGGTGATAAACAGTACCCAGGCC
GCCAAACGAAAATTCGGCAAGAGCTCCGGAGGAGGGGGGAGAGGAAGGGG
GGGAGGCAGGGGCGAGAAGAAACCGAGAAGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGGGGAGGGGGGAAAGCGCTTCAGTCGGATGGTAAGTTCTCC
CTTCCTCTCTCCTTCCCTCTCTCCCTCCGTGGTGGTGCGATGGTGGCAGG
CAAGTCAGAGAGGGACTGGAGGGCGGAGTCCCTGCCCTCTCTCCACGCAT
CAGAAGCATTCACCCTCCCTCCCTCCCTCTCCCTCTTCCTCAAGCCCTCC
CTCCCTCCGACCATCTAAACAGTCTTGCTAAGCGCGCATACGTCTCCATG
GGCCTCTCGAGCGATTATCTCTCCGCTTATCCCCCCCCCAACAGCGCCTG
GTGGCCGAGGTGAGGGAGGAAGGGAGGGAGGGAAGGAGGGAGGGAGGGAG
GAAAGGGAAGGGGAGGAAGGAAGGGAAGGAGAGCTAGGAAGGAAGGGAGA
GAGGGGGAAGGAAAGGCACCGAGAAAGTCCACGTGTTGCCTTGATCACGC
CCTTTCCAAACCTTCCCTCCCCCCCTCCCTCCCTCCCCCCTCCCTCCCTC
CCTCCTGCTTTCCCTTCCTCCCTCCCTCCCTAGGCGCGGAAACGGGGCGT
AG
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Coding sequence (CDS) from alignment at chr17:752140..753841+

>NO17G02550.1 ID=NO17G02550.1|Name=NO17G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr17:752140..753841+ (Nannochloropsis oceanica)
ATGCCAACGATCACCAGCACTGCGGTTGTACCAGCAGGGGAAGGAAGTGA
CAGCATAGCCATTACCACGCTTTCATCGAGTGTGGACTCCGCCGCTGCCT
CCTGTACCCAGCTTAACATGCGAGACAGGATGGAGATGGACAGCGATGTT
CGAGGCTCAGGTGCCCGGGAGGAGGAGGACGACAACGACAAGAAGAGGGA
GGATACGTCAGCTAGGGGTACCTCACCTCTCCCACCTTGCCAAGTCTGCA
ACGCCCAGCCCCGCGTTTATCGCTGTCCACGATGCGCCCTTAAGACATGC
TCGCTTGTCTGCTGTAAGCTACACAAGGTCAAGACGGGGTGCACCGGCCG
TCGGGAGTACTTCACCCACGTGCCGTTGAGCCAATTTACCGACGACCAGC
TCCGAGCAGACTACTTTTTCCTTGAGGAGGTGATAAACAGTACCCAGGCC
GCCAAACGAAAATTCGGCAAGAGCTCCGGAGGAGGGGGGAGAGGAAGGGG
GGGAGGCAGGGGCGAGAAGAAACCGAGAAGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGGGGAGGGGGGAAAGCGCTTCAGTCGGATGCCCTCCCTCCC
TCCGACCATCTAAACAGTCTTGCTAAGCGCGCATACGTCTCCATGGGCCT
CTCGAGCGATTATCTCTCCGCTTATCCCCCCCCCAACAGCGCCTGGTGGC
CGAGGCGCGGAAACGGGGCGTAG
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Synonyms
Publications