NO17G02550, NO17G02550 (gene) Nannochloropsis oceanica

Overview
NameNO17G02550
Unique NameNO17G02550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1702
Alignment locationchr17:752140..753841 +

Link to JBrowse

Properties
Property NameValue
DescriptionBox C/D snoRNA protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:752140..753841 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007529Znf_HIT
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
[Close]
BLAST of NO17G02550 vs. NCBI_GenBank
Match: XP_008781476.1 (PREDICTED: putative box C/D snoRNA protein SPCC613.07 [Phoenix dactylifera])

HSP 1 Score: 78.6 bits (192), Expect = 3.000e-11
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 0 
Query:   80 CQVCNAQPRVYRCPRCALKTCSLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFL 142
            C+ C + P  YRCP C+L+TCSL C K HK +T CTG+R     VPLSQF DD+L +DY FL
Sbjct:   20 CEECGSNPWKYRCPGCSLRTCSLPCVKSHKQRTSCTGKRNRTEFVPLSQFDDDRLISDYNFL 81
[Close]
BLAST of NO17G02550 vs. NCBI_GenBank
Match: PKU60436.1 (hypothetical protein MA16_Dca027104 [Dendrobium catenatum])

HSP 1 Score: 78.2 bits (191), Expect = 3.900e-11
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 0 
Query:   80 CQVCNAQPRVYRCPRCALKTCSLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFL 142
            C  C   PR YRCP C++++CSL C   HK +T CTG+R    HVPLSQF D+ L ADY FL
Sbjct:   19 CNECGLNPRKYRCPGCSIRSCSLPCVNSHKKRTSCTGKRRLTEHVPLSQFDDNLLLADYRFL 80
[Close]
BLAST of NO17G02550 vs. NCBI_GenBank
Match: GAU49004.1 (hypothetical protein TSUD_406750 [Trifolium subterraneum])

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-10
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 0 
Query:   80 CQVCNAQPRVYRCPRCALKTCSLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFL 142
            C+ C + P  Y+CP C++++CSL C K HK++TGCTG+R     VPLSQF DD L +DY  L
Sbjct:   27 CEECKSNPSKYKCPGCSIQSCSLPCVKAHKLRTGCTGKRNQTQFVPLSQFNDDILLSDYNLL 88
[Close]
BLAST of NO17G02550 vs. NCBI_GenBank
Match: XP_015868093.1 (PREDICTED: box C/D snoRNA protein 1-like [Ziziphus jujuba])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0 
Query:   80 CQVCNAQPRVYRCPRCALKTCSLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFL 142
            C+ C + P  Y+CP C++++CSL C K HK +TGCTG+R     VPLSQF D QL +DY  L
Sbjct:   24 CEECKSNPSKYKCPGCSIRSCSLQCVKAHKQRTGCTGKRNQTQFVPLSQFDDKQLLSDYNML 85
[Close]
BLAST of NO17G02550 vs. NCBI_GenBank
Match: XP_015870748.1 (PREDICTED: box C/D snoRNA protein 1-like [Ziziphus jujuba])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0 
Query:   80 CQVCNAQPRVYRCPRCALKTCSLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFL 142
            C+ C + P  Y+CP C++++CSL C K HK +TGCTG+R     VPLSQF D QL +DY  L
Sbjct:   24 CEECKSNPSKYKCPGCSIRSCSLQCVKAHKQRTGCTGKRNQTQFVPLSQFDDKQLLSDYNML 85
[Close]
BLAST of NO17G02550 vs. NCBI_GenBank
Match: XP_018839088.1 (PREDICTED: box C/D snoRNA protein 1 [Juglans regia])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 0 
Query:   74 TSPLPPCQVCNAQPRVYRCPRCALKTCSLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFL 142
            T+PL  C+ C A P  Y+CP C++++CSL C K HK +TGCTG+R     VPLSQF D+ L +DY  L
Sbjct:   10 TNPL-VCEECEASPSKYKCPGCSMRSCSLPCVKAHKQRTGCTGKRSQTQFVPLSQFDDNLLLSDYNLL 76
[Close]
BLAST of NO17G02550 vs. NCBI_GenBank
Match: XP_020693425.1 (uncharacterized protein LOC110107492 [Dendrobium catenatum])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0 
Query:   80 CQVCNAQPRVYRCPRCALKTCSLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFL 142
            C  C + P  YRCP C++++CSL C   HK +T CTG+R    HVPLSQF D+ L ADY FL
Sbjct:   19 CDECGSNPWKYRCPGCSIRSCSLPCVNSHKKRTSCTGKRRLTEHVPLSQFDDNLLLADYRFL 80
[Close]
BLAST of NO17G02550 vs. NCBI_GenBank
Match: PAN26401.1 (hypothetical protein PAHAL_E00285 [Panicum hallii] >PAN26402.1 hypothetical protein PAHAL_E00285 [Panicum hallii])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 0 
Query:   79 PCQVCNAQPRVYRCPRCALKTCSLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFL 142
            PC+ C  QP  YRCP CA  TCSL C ++HK +T CTG+R     VPL QF D+QL +DY FL
Sbjct:   27 PCEECGEQPWKYRCPGCARLTCSLPCVQVHKRRTACTGKRARTDPVPLGQFDDNQLISDYNFL 89
[Close]
BLAST of NO17G02550 vs. NCBI_GenBank
Match: PSS11979.1 (Box C/D snoRNA protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0 
Query:   79 PCQVCNAQPRVYRCPRCALKTCSLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFL 142
            PC+ C   P  Y+CP C++++CSL C K HK +TGCTG+R+    VPLSQF D+ L +DY  L
Sbjct:   19 PCKECKVNPSKYKCPGCSVRSCSLPCVKAHKQRTGCTGKRQQTQFVPLSQFDDNLLLSDYNML 81
[Close]
BLAST of NO17G02550 vs. NCBI_GenBank
Match: XP_021686680.1 (box C/D snoRNA protein 1 [Hevea brasiliensis])

HSP 1 Score: 75.5 bits (184), Expect = 2.500e-10
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 0 
Query:   68 DTSARGTSPLPPCQVCNAQPRVYRCPRCALKTCSLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFL 142
            D S+R  +PL  C+ C   P  Y+CP C++++CSL C K HK +TGC G+R     VPLSQF D+ L +DY  L
Sbjct:    9 DQSSRNPNPL--CEECKENPSKYKCPGCSIRSCSLPCVKAHKQRTGCLGKRLQTQFVPLSQFNDNLLLSDYNLL 80
The following BLAST results are available for this feature:
BLAST of NO17G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008781476.13.000e-1156.45PREDICTED: putative box C/D snoRNA protein SPCC613... [more]
PKU60436.13.900e-1154.84hypothetical protein MA16_Dca027104 [Dendrobium ca... [more]
GAU49004.11.100e-1051.61hypothetical protein TSUD_406750 [Trifolium subter... [more]
XP_015868093.12.000e-1051.61PREDICTED: box C/D snoRNA protein 1-like [Ziziphus... [more]
XP_015870748.12.000e-1051.61PREDICTED: box C/D snoRNA protein 1-like [Ziziphus... [more]
XP_018839088.12.000e-1051.47PREDICTED: box C/D snoRNA protein 1 [Juglans regia... [more]
XP_020693425.12.000e-1053.23uncharacterized protein LOC110107492 [Dendrobium c... [more]
PAN26401.12.000e-1055.56hypothetical protein PAHAL_E00285 [Panicum hallii]... [more]
PSS11979.12.000e-1050.79Box C/D snoRNA protein [Actinidia chinensis var. c... [more]
XP_021686680.12.500e-1047.30box C/D snoRNA protein 1 [Hevea brasiliensis][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL160nonsL160Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02550.1NO17G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02550.1NO17G02550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02550 ID=NO17G02550|Name=NO17G02550|organism=Nannochloropsis oceanica|type=gene|length=1702bp
ATGCCAACGATCACCAGCACTGCGGTTGTACCAGCAGGGGAAGGAAGTGA
CAGCATAGCCATTACCACGCTTTCATCGAGTGTGGACTCCGCCGCTGCCT
CCTGTACCCAGCTTAACATGCGAGACAGGATGGAGATGGACAGCGATGTT
CGAGgtatggcaggtgctatccctctccgtcatgctcatcatccctctca
tcctctctttctttgaccgagatgtgagctccttcctccatgccctcagc
ccatccatcccttccttcttcctctcttcgacactccaacgagggccaaa
cgacaatgacatattgattcttacagccatctcagccccccaccccttgc
cccatgaaaatcccttgttcccgcccgctcaaccactcttccccttcgta
ctgcatccccctctcgcgcttcgacagGCTCAGGTGCCCGGGAGGAGGAG
GACGACAACGACAAGAAGAGGGAGGATACGTCAGCTAGGGGTACCTCACC
TCTCCCACCTTGCCAAGTCTGCAACGCCCAGCCCCGCGTTTATCGCTGTC
CACGATGCGCCCTTAAGACATGCTCGCTTGTCTGCTGTAAGCTACACAAG
GTCAAGgtacgggccgcgagagagggagggagggagggagggagggtgca
tgccttctgacccgcatagcgtatctcgctcttggaaatccattgtcttc
cttctctccctcccttctcatcacctctttagACGGGGTGCACCGGCCGT
CGGGAGTACTTCACCCACGTGCCGTTGAGCCAATTTACCGACGACCAGCT
CCGAGCAGgtccgtgcccctccctcctctccgccctccctccctcccacc
ctccctcccgtcatcctcttctcggcccttgtacaccctctccttctctt
tctcttgaaatctccttttctcatttcccttctgagtatgtacatgccgt
catccctcctcaaaccttgattctccctccctccctccctccctccctcc
ctccctcagACTACTTTTTCCTTGAGGAGGTGATAAACAGTACCCAGGCC
GCCAAACGAAAATTCGGCAAGAGCTCCGGAGGAGGGGGGAGAGGAAGGGG
GGGAGGCAGGGGCGAGAAGAAACCGAGAAGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGGGGAGGGGGGAAAGCGCTTCAGTCGGATGgtaagttctcc
cttcctctctccttccctctctccctccgtggtggtgcgatggtggcagg
caagtcagagagggactggagggcggagtccctgccctctctccacgcat
cagaagcattcaccctccctccctccctctccctcttcctcaagCCCTCC
CTCCCTCCGACCATCTAAACAGTCTTGCTAAGCGCGCATACGTCTCCATG
GGCCTCTCGAGCGATTATCTCTCCGCTTATCCCCCCCCCAACAGCGCCTG
GTGGCCGAGgtgagggaggaagggagggagggaaggagggagggagggag
gaaagggaaggggaggaaggaagggaaggagagctaggaaggaagggaga
gagggggaaggaaaggcaccgagaaagtccacgtgttgccttgatcacgc
cctttccaaaccttccctccccccctccctccctcccccctccctccctc
cctcctgctttcccttcctccctccctccctagGCGCGGAAACGGGGCGT
AG
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protein sequence of NO17G02550.1

>NO17G02550.1-protein ID=NO17G02550.1-protein|Name=NO17G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MPTITSTAVVPAGEGSDSIAITTLSSSVDSAAASCTQLNMRDRMEMDSDV
RGSGAREEEDDNDKKREDTSARGTSPLPPCQVCNAQPRVYRCPRCALKTC
SLVCCKLHKVKTGCTGRREYFTHVPLSQFTDDQLRADYFFLEEVINSTQA
AKRKFGKSSGGGGRGRGGGRGEKKPRRGGGGGGGGGGGGGKALQSDALPP
SDHLNSLAKRAYVSMGLSSDYLSAYPPPNSAWWPRRGNGA*
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Synonyms
Publications