NO17G02340.1, NO17G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02340.1
Unique NameNO17G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1779
Alignment locationchr17:686843..688621 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:686843..688621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G02340.1 vs.
Match: EWM24176.1 (hypothetical protein Naga_100955g1 [Nannochloropsis gaditana])

HSP 1 Score: 366.7 bits (940), Expect = 1.400e-97
Identity = 261/581 (44.92%), Postives = 328/581 (56.45%), Query Frame = 0 
Query:    4 LFFYLGLWAAAAFLRYRTLRQGLLPWSRRRGRYTWSFTGWAIVWECKTSSSSFPFASSLPLHRSTENNNERERDPPYYENGKADKKKSFLLKDNLSIVAFIIGQVLVILFLAWNCCVTLLQSSFSSSSFSSS-SLPPSFSDDYGRTHQHEQHRRLSTAIPS--SFSSSYS--SYSPFPFSFHIATYLKPLSLLPSSSS----SSSPSSLLLLWLASLLSLLIHEWGHARWAIKEGIGYQAFGVYLALGLLPGAYVLLDPSLLSSLPPLPQLRVICAGIWHNLLLCICLAFLLLTDLASWPVSTTNQGILLLPPPAFLPPSSPLFHLLRPGEILSSLQDTPTPSLSTYYSLLEQQVNLTAHRARALSSLIPNPQMANATITRLLENLLPAL-PFPNPPFLPPIAAVDTAGLLQSETFCTSLNLLSPQHMKGGKEGGKDGR-RLPHCCTFDALTGEEGKEGERG---KEANEGATCFAAFDLLLKQQLFPTPPPSLSTSFPPSSSFVTLTCLPARDVLLHSTLFSSAPPSLPPSSICLRPVNLPPNVLLKLTLSSSHVLAYEGPLHPFLPPISPPPSSLTIIP 571
            LF+ L +WA A+ +R R  RQ   P   R GR T S T  AIV E K S S    + +LPL              P   +     +K++    N S++ F +GQ+LV LFLAWN   TLL S+F+      S SLP   S +     +  + RRLSTA  S  SF +S S  ++ P   +FH+AT L+PLSLL  ++     +SS  S  +LWLAS LSL IHEWGHAR A+KEGIGYQA GVY A GL PGAYV+LDP LL +LPPL QLR++ AG+W NLLLC+    LL  +L    +ST   G+L LPPP  LPPSSPL  L RPG +L+SLQD  TPSL  +   ++ Q+   + RA A  + IP+P  ANAT+T LL  L P   P    PF   I AV+  GLLQ++TFCTSL   +P H +      ++GR RLP CCTF+ALTG +G++ +RG   +E     TCFAA+DL +     P+   S S+ FP  SSFVTL CLPARDV+LHSTL    PP  PP          PP                  P  P LPP  PPP    I P
Sbjct:    7 LFYCLLVWAVASLIRCRRQRQNASPCVYRYGRCTVSLTSLAIVGEIKASGSRSASSPALPLPSVL----------PLARHQAPRSRKAWCQGQNFSVLVFSVGQILVCLFLAWNLGYTLLHSTFTWPRLGPSISLPSHHSPNLPA--ERPRPRRLSTASSSMSSFPASPSGPTHPPSSTAFHVATRLRPLSLLSPATGHNTLTSSAPSWFILWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFNLLPSLLSTPTSGLLFLPPP--LPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRASAFRNGIPSPHEANATVTLLLHALPPPTPPSTTSPFSSKIEAVERTGLLQADTFCTSLPPFAPHHFQ------QEGRGRLPTCCTFEALTG-QGRDRKRGAGEEEEGRDTTCFAAYDLGVGTSSLPS---SSSSLFPHHSSFVTLACLPARDVILHSTLSPPPPPPPPP----------PP------------------PPPPPLPPPPPPPPPPRIFP 535
The following BLAST results are available for this feature:
BLAST of NO17G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 1.40e-97 / Id = 44.92SequenceEWM24176.1
Match NameE-valueIdentityDescription
EWM24176.11.400e-9744.92hypothetical protein Naga_100955g1 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02340NO17G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02340.1NO17G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02340.1.cds1NO17G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02340.1 ID=NO17G02340.1|Name=NO17G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp
ATGAGCTTTCTCTTCTTCTACCTGGGGCTCTGGGCCGCTGCTGCCTTTTT
GCGCTATCGTACCTTGCGGCAGGGCTTGCTTCCCTGGTCACGCAGAAGGG
GGCGATACACCTGGAGTTTCACAGGATGGGCTATCGTGTGGGAGTGCAAG
ACTTCCTCAAGTTCCTTTCCATTTGCGTCCTCTCTGCCCCTCCACCGGAG
CACTGAGAACAACAATGAGCGCGAACGTGACCCTCCATACTATGAAAACG
GCAAAGCGGACAAGAAAAAGAGCTTTCTTCTCAAGGATAATCTCAGTATT
GTGGCGTTTATCATCGGGCAGGTCCTTGTCATCCTTTTTCTTGCCTGGAA
TTGCTGTGTTACTCTCCTTCAATCTTCCTTTTCCTCCTCCTCCTTCTCCT
CCTCTTCTCTCCCTCCGTCCTTTTCCGACGATTACGGCCGCACCCACCAG
CACGAGCAACACCGTCGTCTTTCTACCGCCATCCCTTCTTCCTTCTCCTC
TTCCTATTCCTCCTACTCTCCCTTCCCCTTCTCCTTCCACATCGCCACCT
ACCTCAAGCCCCTCTCCCTCCTCCCCTCCTCCTCCTCTTCCTCTTCCCCC
TCCTCCCTCCTTCTCCTCTGGCTCGCCTCCCTACTCTCCCTCCTCATCCA
CGAATGGGGCCATGCTCGGTGGGCCATCAAAGAAGGCATAGGATATCAAG
CCTTTGGTGTCTACCTCGCCCTTGGCCTCCTCCCAGGTGCCTACGTCCTC
CTCGACCCCTCCCTCCTTTCCTCCCTCCCTCCACTCCCCCAGCTTCGAGT
CATCTGCGCCGGGATTTGGCACAACCTTCTGCTTTGCATTTGCCTCGCCT
TTCTCCTCCTCACGGACCTTGCCTCTTGGCCAGTCTCCACCACCAACCAA
GGCATCCTCCTCCTCCCTCCCCCTGCTTTCCTCCCTCCCTCCTCCCCCCT
CTTCCACCTCCTCCGCCCCGGCGAGATCCTTTCCTCCCTCCAAGACACCC
CCACGCCTTCCCTCTCTACCTACTACTCCCTCCTCGAGCAGCAAGTGAAT
CTCACGGCCCATAGAGCCCGTGCCCTCTCCTCCTTAATCCCTAATCCACA
AATGGCCAACGCCACCATCACCCGTCTCCTCGAAAACCTCCTTCCCGCCC
TCCCTTTCCCCAACCCTCCCTTCCTCCCTCCCATTGCCGCAGTAGACACG
GCAGGCTTGCTGCAATCCGAGACATTTTGCACTTCACTCAACCTCCTCTC
TCCCCAGCATATGAAGGGTGGGAAGGAGGGAGGGAAGGACGGTAGACGCC
TCCCGCATTGTTGTACGTTTGATGCACTGACCGGTGAGGAAGGTAAGGAG
GGAGAGAGGGGCAAAGAGGCCAACGAAGGAGCGACGTGCTTCGCTGCCTT
TGATCTGCTGCTAAAGCAGCAACTTTTCCCCACTCCTCCTCCCTCCCTCT
CAACCTCCTTCCCTCCCTCCTCCTCTTTCGTCACCCTCACCTGCCTTCCC
GCCCGCGACGTCCTCCTCCACTCCACCCTCTTTTCTTCGGCCCCTCCCTC
CCTCCCTCCCTCCTCCATTTGCCTTCGTCCCGTCAACCTCCCTCCCAACG
TCCTCCTCAAACTCACACTTTCCTCCTCCCACGTCCTCGCCTACGAGGGC
CCCCTCCACCCCTTCCTCCCCCCCATCTCCCCCCCTCCCTCATCACTGAC
CATCATCCCCGACCCTGGCTCAAGGCTGTCCTCCCTCCCTCCCTGGCCCT
CGCCCTCTCCCCCTTCCTCCTGCGGTTGA
back to top

protein sequence of NO17G02340.1

>NO17G02340.1-protein ID=NO17G02340.1-protein|Name=NO17G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp
MSFLFFYLGLWAAAAFLRYRTLRQGLLPWSRRRGRYTWSFTGWAIVWECK
TSSSSFPFASSLPLHRSTENNNERERDPPYYENGKADKKKSFLLKDNLSI
VAFIIGQVLVILFLAWNCCVTLLQSSFSSSSFSSSSLPPSFSDDYGRTHQ
HEQHRRLSTAIPSSFSSSYSSYSPFPFSFHIATYLKPLSLLPSSSSSSSP
SSLLLLWLASLLSLLIHEWGHARWAIKEGIGYQAFGVYLALGLLPGAYVL
LDPSLLSSLPPLPQLRVICAGIWHNLLLCICLAFLLLTDLASWPVSTTNQ
GILLLPPPAFLPPSSPLFHLLRPGEILSSLQDTPTPSLSTYYSLLEQQVN
LTAHRARALSSLIPNPQMANATITRLLENLLPALPFPNPPFLPPIAAVDT
AGLLQSETFCTSLNLLSPQHMKGGKEGGKDGRRLPHCCTFDALTGEEGKE
GERGKEANEGATCFAAFDLLLKQQLFPTPPPSLSTSFPPSSSFVTLTCLP
ARDVLLHSTLFSSAPPSLPPSSICLRPVNLPPNVLLKLTLSSSHVLAYEG
PLHPFLPPISPPPSSLTIIPDPGSRLSSLPPWPSPSPPSSCG*
back to top

mRNA from alignment at chr17:686843..688621+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02340.1 ID=NO17G02340.1|Name=NO17G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp|location=Sequence derived from alignment at chr17:686843..688621+ (Nannochloropsis oceanica)
ATGAGCTTTCTCTTCTTCTACCTGGGGCTCTGGGCCGCTGCTGCCTTTTT
GCGCTATCGTACCTTGCGGCAGGGCTTGCTTCCCTGGTCACGCAGAAGGG
GGCGATACACCTGGAGTTTCACAGGATGGGCTATCGTGTGGGAGTGCAAG
ACTTCCTCAAGTTCCTTTCCATTTGCGTCCTCTCTGCCCCTCCACCGGAG
CACTGAGAACAACAATGAGCGCGAACGTGACCCTCCATACTATGAAAACG
GCAAAGCGGACAAGAAAAAGAGCTTTCTTCTCAAGGATAATCTCAGTATT
GTGGCGTTTATCATCGGGCAGGTCCTTGTCATCCTTTTTCTTGCCTGGAA
TTGCTGTGTTACTCTCCTTCAATCTTCCTTTTCCTCCTCCTCCTTCTCCT
CCTCTTCTCTCCCTCCGTCCTTTTCCGACGATTACGGCCGCACCCACCAG
CACGAGCAACACCGTCGTCTTTCTACCGCCATCCCTTCTTCCTTCTCCTC
TTCCTATTCCTCCTACTCTCCCTTCCCCTTCTCCTTCCACATCGCCACCT
ACCTCAAGCCCCTCTCCCTCCTCCCCTCCTCCTCCTCTTCCTCTTCCCCC
TCCTCCCTCCTTCTCCTCTGGCTCGCCTCCCTACTCTCCCTCCTCATCCA
CGAATGGGGCCATGCTCGGTGGGCCATCAAAGAAGGCATAGGATATCAAG
CCTTTGGTGTCTACCTCGCCCTTGGCCTCCTCCCAGGTGCCTACGTCCTC
CTCGACCCCTCCCTCCTTTCCTCCCTCCCTCCACTCCCCCAGCTTCGAGT
CATCTGCGCCGGGATTTGGCACAACCTTCTGCTTTGCATTTGCCTCGCCT
TTCTCCTCCTCACGGACCTTGCCTCTTGGCCAGTCTCCACCACCAACCAA
GGCATCCTCCTCCTCCCTCCCCCTGCTTTCCTCCCTCCCTCCTCCCCCCT
CTTCCACCTCCTCCGCCCCGGCGAGATCCTTTCCTCCCTCCAAGACACCC
CCACGCCTTCCCTCTCTACCTACTACTCCCTCCTCGAGCAGCAAGTGAAT
CTCACGGCCCATAGAGCCCGTGCCCTCTCCTCCTTAATCCCTAATCCACA
AATGGCCAACGCCACCATCACCCGTCTCCTCGAAAACCTCCTTCCCGCCC
TCCCTTTCCCCAACCCTCCCTTCCTCCCTCCCATTGCCGCAGTAGACACG
GCAGGCTTGCTGCAATCCGAGACATTTTGCACTTCACTCAACCTCCTCTC
TCCCCAGCATATGAAGGGTGGGAAGGAGGGAGGGAAGGACGGTAGACGCC
TCCCGCATTGTTGTACGTTTGATGCACTGACCGGTGAGGAAGGTAAGGAG
GGAGAGAGGGGCAAAGAGGCCAACGAAGGAGCGACGTGCTTCGCTGCCTT
TGATCTGCTGCTAAAGCAGCAACTTTTCCCCACTCCTCCTCCCTCCCTCT
CAACCTCCTTCCCTCCCTCCTCCTCTTTCGTCACCCTCACCTGCCTTCCC
GCCCGCGACGTCCTCCTCCACTCCACCCTCTTTTCTTCGGCCCCTCCCTC
CCTCCCTCCCTCCTCCATTTGCCTTCGTCCCGTCAACCTCCCTCCCAACG
TCCTCCTCAAACTCACACTTTCCTCCTCCCACGTCCTCGCCTACGAGGGC
CCCCTCCACCCCTTCCTCCCCCCCATCTCCCCCCCTCCCTCATCACTGAC
CATCATCCCCGACCCTGGCTCAAGGCTGTCCTCCCTCCCTCCCTGGCCCT
CGCCCTCTCCCCCTTCCTCCTGCGGTTGA
back to top

Coding sequence (CDS) from alignment at chr17:686843..688621+

>NO17G02340.1 ID=NO17G02340.1|Name=NO17G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr17:686843..688621+ (Nannochloropsis oceanica)
ATGAGCTTTCTCTTCTTCTACCTGGGGCTCTGGGCCGCTGCTGCCTTTTT
GCGCTATCGTACCTTGCGGCAGGGCTTGCTTCCCTGGTCACGCAGAAGGG
GGCGATACACCTGGAGTTTCACAGGATGGGCTATCGTGTGGGAGTGCAAG
ACTTCCTCAAGTTCCTTTCCATTTGCGTCCTCTCTGCCCCTCCACCGGAG
CACTGAGAACAACAATGAGCGCGAACGTGACCCTCCATACTATGAAAACG
GCAAAGCGGACAAGAAAAAGAGCTTTCTTCTCAAGGATAATCTCAGTATT
GTGGCGTTTATCATCGGGCAGGTCCTTGTCATCCTTTTTCTTGCCTGGAA
TTGCTGTGTTACTCTCCTTCAATCTTCCTTTTCCTCCTCCTCCTTCTCCT
CCTCTTCTCTCCCTCCGTCCTTTTCCGACGATTACGGCCGCACCCACCAG
CACGAGCAACACCGTCGTCTTTCTACCGCCATCCCTTCTTCCTTCTCCTC
TTCCTATTCCTCCTACTCTCCCTTCCCCTTCTCCTTCCACATCGCCACCT
ACCTCAAGCCCCTCTCCCTCCTCCCCTCCTCCTCCTCTTCCTCTTCCCCC
TCCTCCCTCCTTCTCCTCTGGCTCGCCTCCCTACTCTCCCTCCTCATCCA
CGAATGGGGCCATGCTCGGTGGGCCATCAAAGAAGGCATAGGATATCAAG
CCTTTGGTGTCTACCTCGCCCTTGGCCTCCTCCCAGGTGCCTACGTCCTC
CTCGACCCCTCCCTCCTTTCCTCCCTCCCTCCACTCCCCCAGCTTCGAGT
CATCTGCGCCGGGATTTGGCACAACCTTCTGCTTTGCATTTGCCTCGCCT
TTCTCCTCCTCACGGACCTTGCCTCTTGGCCAGTCTCCACCACCAACCAA
GGCATCCTCCTCCTCCCTCCCCCTGCTTTCCTCCCTCCCTCCTCCCCCCT
CTTCCACCTCCTCCGCCCCGGCGAGATCCTTTCCTCCCTCCAAGACACCC
CCACGCCTTCCCTCTCTACCTACTACTCCCTCCTCGAGCAGCAAGTGAAT
CTCACGGCCCATAGAGCCCGTGCCCTCTCCTCCTTAATCCCTAATCCACA
AATGGCCAACGCCACCATCACCCGTCTCCTCGAAAACCTCCTTCCCGCCC
TCCCTTTCCCCAACCCTCCCTTCCTCCCTCCCATTGCCGCAGTAGACACG
GCAGGCTTGCTGCAATCCGAGACATTTTGCACTTCACTCAACCTCCTCTC
TCCCCAGCATATGAAGGGTGGGAAGGAGGGAGGGAAGGACGGTAGACGCC
TCCCGCATTGTTGTACGTTTGATGCACTGACCGGTGAGGAAGGTAAGGAG
GGAGAGAGGGGCAAAGAGGCCAACGAAGGAGCGACGTGCTTCGCTGCCTT
TGATCTGCTGCTAAAGCAGCAACTTTTCCCCACTCCTCCTCCCTCCCTCT
CAACCTCCTTCCCTCCCTCCTCCTCTTTCGTCACCCTCACCTGCCTTCCC
GCCCGCGACGTCCTCCTCCACTCCACCCTCTTTTCTTCGGCCCCTCCCTC
CCTCCCTCCCTCCTCCATTTGCCTTCGTCCCGTCAACCTCCCTCCCAACG
TCCTCCTCAAACTCACACTTTCCTCCTCCCACGTCCTCGCCTACGAGGGC
CCCCTCCACCCCTTCCTCCCCCCCATCTCCCCCCCTCCCTCATCACTGAC
CATCATCCCCGACCCTGGCTCAAGGCTGTCCTCCCTCCCTCCCTGGCCCT
CGCCCTCTCCCCCTTCCTCCTGCGGTTGA
back to top
Synonyms
Publications