NO17G01860, NO17G01860 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G01860 vs. NCBI_GenBank
Match: EWM24251.1 (60s ribosomal protein l17-2 [Nannochloropsis gaditana]) HSP 1 Score: 345.1 bits (884), Expect = 1.300e-91 Identity = 168/182 (92.31%), Postives = 173/182 (95.05%), Query Frame = 0 Query: 1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKKEAGAPKLTRKQAARVRVGGGN 183 MVRYSRE DDPNKAAKARGSHLRVHFKHVREV HT+ GWQV KAKQFLEDVLQYKRAVPFTRF G+GRHAQ KLL+VPGSQCAWPQKATK+VLDMLTNAESNAEVKGMDTDNLYI+HAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPV VKKE GAPKLTRKQAARVRVGGGN Sbjct: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAARVRVGGGN 182
BLAST of NO17G01860 vs. NCBI_GenBank
Match: OQR93850.1 (60S ribosomal protein L17-2 [Achlya hypogyna]) HSP 1 Score: 250.4 bits (638), Expect = 4.400e-63 Identity = 122/185 (65.95%), Postives = 151/185 (81.62%), Query Frame = 0 Query: 1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK--EAGAPKLTRKQAARVRV--GGG 182 M YS+EP+D +++AK+RGSHLRVHFKH REVCHT+ G V KAK+FLE VL+ K AVPFT+FT GVGRHAQ K LN PG +C WPQKATK++LD++ NAE+NAE+KG+DT+ LYI H Q N A KQRRRTYRAHGRI PYMS+PAH+EIILTEK +V K +A APK++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDQSRSAKSRGSHLRVHFKHCREVCHTINGLPVVKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGKSLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTEKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIEIILTEKKENVAKAEDAAAPKVSRKRNAQLRLKSGGG 185
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_008612864.1 (50S ribosomal protein L22 [Saprolegnia diclina VS20] >XP_012200075.1 50S ribosomal protein L22 [Saprolegnia parasitica CBS 223.65] >EQC33641.1 50S ribosomal protein L22 [Saprolegnia diclina VS20] >KDO29228.1 50S ribosomal protein L22 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 248.1 bits (632), Expect = 2.200e-62 Identity = 120/185 (64.86%), Postives = 149/185 (80.54%), Query Frame = 0 Query: 1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK--EAGAPKLTRKQAARVRV--GGG 182 M YS+EP+D +++AK+RGSHLRVHFKH REVCHT+ G V KAK+FLE VL+ K AVPFT+FT GVGRHAQ K LN PG +C WPQKATK++LD++ NAE+NAE+KG+DTD LYI H Q N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK +V K +A K++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDQSRSAKSRGSHLRVHFKHCREVCHTIKGLPVGKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGKTLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTDKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKKENVAKAEDAAPAKISRKRNAQLRLKSGGG 185
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_008869568.1 (ribosomal protein L22 [Aphanomyces invadans] >ETW01720.1 ribosomal protein L22 [Aphanomyces invadans]) HSP 1 Score: 245.7 bits (626), Expect = 1.100e-61 Identity = 118/185 (63.78%), Postives = 148/185 (80.00%), Query Frame = 0 Query: 1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK--EAGAPKLTRKQAA--RVRVGGG 182 M YS+EP+D N +AKARG HLRVH+KH REVCHT+ G+ ++KAK+FL DVL++K AVPFT++T G GRHAQ KLLN PG +C WPQKAT+++LD++ NAE+NAE+KG+DT LYI HAQ N A KQRRRTYRAHGRI PYM++PAH+E+ILTEK +V K E KLTRK+ A R++ GGG Sbjct: 38 MPSYSQEPEDQNTSAKARGRHLRVHYKHCREVCHTIKGYSLAKAKKFLGDVLEFKAAVPFTKYTGGPGRHAQGKLLNAPGDKCRWPQKATRIILDLVKNAEANAELKGLDTAKLYIAHAQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKENVAKAEEPKTTKLTRKRQAVLRLKSGGG 222
BLAST of NO17G01860 vs. NCBI_GenBank
Match: GAY03080.1 (60S ribosomal protein L17-2 [Pythium insidiosum]) HSP 1 Score: 245.0 bits (624), Expect = 1.800e-61 Identity = 119/187 (63.64%), Postives = 149/187 (79.68%), Query Frame = 0 Query: 1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK----EAGAPKLTRKQAARVRV--GGG 182 M YS+EP+D +AAKARGSHLRVHFKH REVCH + G +SKAK FL+ VL+YK+AVPFT+FT G GRHAQ KL N PG +C WPQKATK++LD++ NAE+NAEVKG+DTD L+I HAQ N A KQRRRTYRAHGRI PYM++PAH+E+ILTEK +V+K + K++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVCHAIKGMPLSKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRNAPGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDKLFISHAQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKRENVQKAEEDKKVVVKVSRKRQAQLRLKSGGG 187
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_009839365.1 (ribosomal protein L22 [Aphanomyces astaci] >ETV71119.1 ribosomal protein L22 [Aphanomyces astaci]) HSP 1 Score: 241.9 bits (616), Expect = 1.600e-60 Identity = 117/185 (63.24%), Postives = 146/185 (78.92%), Query Frame = 0 Query: 1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK--EAGAPKLTRKQAA--RVRVGGG 182 M YS+EP+D N +AKARG HLRVH+KH REVCHT+ G+ + KAK+FL DVL++K AVPFT++T G GRHAQ KLLN PG +C WPQKAT+++LD++ NAE+NAE+K +DT LYI HAQ N A KQRRRTYRAHGRI PYM++PAH+E+ILTEK +V K E KLTRK+ A R++ GGG Sbjct: 1 MPSYSQEPEDQNTSAKARGRHLRVHYKHCREVCHTIKGYSLVKAKKFLGDVLEFKAAVPFTKYTGGPGRHAQGKLLNAPGDKCRWPQKATRIILDLVKNAEANAELKELDTSKLYIAHAQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKDNVAKAEEPKTAKLTRKRQAVLRLKSGGG 185
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_009515467.1 (hypothetical protein PHYSODRAFT_284211 [Phytophthora sojae] >EGZ28192.1 hypothetical protein PHYSODRAFT_284211 [Phytophthora sojae]) HSP 1 Score: 240.0 bits (611), Expect = 5.900e-60 Identity = 119/186 (63.98%), Postives = 146/186 (78.49%), Query Frame = 0 Query: 1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK---EAGAPKLTRKQAARVRV--GGG 182 M YS+EP+D +AAKARGSHLRVHFKH REV H + G ++KAK FL+ VL+YK+AVPFT+FT G GRHAQ KL G +C WPQKATK++LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK +V K EA K++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAAEEAKPVKVSRKRQAQLRLKSGGG 186
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_002906426.1 (60S ribosomal protein L17-2 [Phytophthora infestans T30-4] >XP_008911496.1 ribosomal protein L22 [Phytophthora parasitica INRA-310] >EEY65827.1 60S ribosomal protein L17-2 [Phytophthora infestans T30-4] >ETI37642.1 ribosomal protein L22 [Phytophthora parasitica P1569] >ETK77908.1 ribosomal protein L22 [Phytophthora parasitica] >ETL31341.1 ribosomal protein L22 [Phytophthora parasitica] >ETL84560.1 ribosomal protein L22 [Phytophthora parasitica] >ETM37700.1 ribosomal protein L22 [Phytophthora parasitica] >ETM40459.1 ribosomal protein L22 [Phytophthora parasitica] >ETN02952.1 ribosomal protein L22 [Phytophthora parasitica INRA-310] >ETO66436.1 ribosomal protein L22 [Phytophthora parasitica P1976] >ETP07551.1 ribosomal protein L22 [Phytophthora parasitica CJ01A1] >ETP35579.1 ribosomal protein L22 [Phytophthora parasitica P10297] >KUF89268.1 Fructose 1 [Phytophthora nicotianae]) HSP 1 Score: 240.0 bits (611), Expect = 5.900e-60 Identity = 119/186 (63.98%), Postives = 146/186 (78.49%), Query Frame = 0 Query: 1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK---EAGAPKLTRKQAARVRV--GGG 182 M YS+EP+D +AAKARGSHLRVHFKH REV H + G ++KAK FL+ VL+YK+AVPFT+FT G GRHAQ KL G +C WPQKATK++LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK +V K EA K++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEEAKPVKVSRKRQAQLRLKSGGG 186
BLAST of NO17G01860 vs. NCBI_GenBank
Match: OWZ24859.1 (60S ribosomal protein L17-2 [Phytophthora megakarya]) HSP 1 Score: 239.6 bits (610), Expect = 7.700e-60 Identity = 119/186 (63.98%), Postives = 146/186 (78.49%), Query Frame = 0 Query: 1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK---EAGAPKLTRKQAARVRV--GGG 182 M YS+EP+D +AAKARGSHLRVHFKH REV H + G ++KAK FL+ VL+YK+AVPFT+FT G GRHAQ KL G +C WPQKATK++LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK +V K EA K++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKTFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEEAKPVKVSRKRQAQLRLKSGGG 186
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_024578112.1 (ribosomal protein l22 [Plasmopara halstedii] >CEG41743.1 ribosomal protein l22 [Plasmopara halstedii]) HSP 1 Score: 238.4 bits (607), Expect = 1.700e-59 Identity = 118/186 (63.44%), Postives = 145/186 (77.96%), Query Frame = 0 Query: 1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK---EAGAPKLTRKQAARVRV--GGG 182 M YS+EP+D +AAKARGSHLRVHFKH REV H + G ++KAK FL+ VL+YK+AVPFT+FT G GRHAQ KL G +C WPQKATK++LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK +V K E K++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVTHAIKGMPLNKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANTAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEETKPVKVSRKRQAQLRLKSGGG 186 The following BLAST results are available for this feature:
BLAST of NO17G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G01860 ID=NO17G01860|Name=NO17G01860|organism=Nannochloropsis oceanica|type=gene|length=739bpback to top protein sequence of NO17G01860.1 >NO17G01860.1-protein ID=NO17G01860.1-protein|Name=NO17G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bpback to top Synonyms
Publications
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