NO17G01860, NO17G01860 (gene) Nannochloropsis oceanica

Overview
NameNO17G01860
Unique NameNO17G01860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length739
Alignment locationchr17:539468..540206 +

Link to JBrowse

Properties
Property NameValue
Description60s ribosomal protein l17-2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:539468..540206 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR036394Ribosomal_L22/L17_sf
IPR005721Ribosomal_L22/L17_euk/arc
IPR001063Ribosomal_L22
Homology
BLAST of NO17G01860 vs. NCBI_GenBank
Match: EWM24251.1 (60s ribosomal protein l17-2 [Nannochloropsis gaditana])

HSP 1 Score: 345.1 bits (884), Expect = 1.300e-91
Identity = 168/182 (92.31%), Postives = 173/182 (95.05%), Query Frame = 0
Query:    1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKKEAGAPKLTRKQAARVRVGGGN 183
            MVRYSRE DDPNKAAKARGSHLRVHFKHVREV HT+ GWQV KAKQFLEDVLQYKRAVPFTRF  G+GRHAQ KLL+VPGSQCAWPQKATK+VLDMLTNAESNAEVKGMDTDNLYI+HAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPV VKKE GAPKLTRKQAARVRVGGGN
Sbjct:    1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAARVRVGGGN 182          
BLAST of NO17G01860 vs. NCBI_GenBank
Match: OQR93850.1 (60S ribosomal protein L17-2 [Achlya hypogyna])

HSP 1 Score: 250.4 bits (638), Expect = 4.400e-63
Identity = 122/185 (65.95%), Postives = 151/185 (81.62%), Query Frame = 0
Query:    1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK--EAGAPKLTRKQAARVRV--GGG 182
            M  YS+EP+D +++AK+RGSHLRVHFKH REVCHT+ G  V KAK+FLE VL+ K AVPFT+FT GVGRHAQ K LN PG +C WPQKATK++LD++ NAE+NAE+KG+DT+ LYI H Q N A KQRRRTYRAHGRI PYMS+PAH+EIILTEK  +V K  +A APK++RK+ A++R+  GGG
Sbjct:    1 MPSYSQEPEDQSRSAKSRGSHLRVHFKHCREVCHTINGLPVVKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGKSLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTEKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIEIILTEKKENVAKAEDAAAPKVSRKRNAQLRLKSGGG 185          
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_008612864.1 (50S ribosomal protein L22 [Saprolegnia diclina VS20] >XP_012200075.1 50S ribosomal protein L22 [Saprolegnia parasitica CBS 223.65] >EQC33641.1 50S ribosomal protein L22 [Saprolegnia diclina VS20] >KDO29228.1 50S ribosomal protein L22 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 248.1 bits (632), Expect = 2.200e-62
Identity = 120/185 (64.86%), Postives = 149/185 (80.54%), Query Frame = 0
Query:    1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK--EAGAPKLTRKQAARVRV--GGG 182
            M  YS+EP+D +++AK+RGSHLRVHFKH REVCHT+ G  V KAK+FLE VL+ K AVPFT+FT GVGRHAQ K LN PG +C WPQKATK++LD++ NAE+NAE+KG+DTD LYI H Q N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK  +V K  +A   K++RK+ A++R+  GGG
Sbjct:    1 MPSYSQEPEDQSRSAKSRGSHLRVHFKHCREVCHTIKGLPVGKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGKTLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTDKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKKENVAKAEDAAPAKISRKRNAQLRLKSGGG 185          
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_008869568.1 (ribosomal protein L22 [Aphanomyces invadans] >ETW01720.1 ribosomal protein L22 [Aphanomyces invadans])

HSP 1 Score: 245.7 bits (626), Expect = 1.100e-61
Identity = 118/185 (63.78%), Postives = 148/185 (80.00%), Query Frame = 0
Query:    1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK--EAGAPKLTRKQAA--RVRVGGG 182
            M  YS+EP+D N +AKARG HLRVH+KH REVCHT+ G+ ++KAK+FL DVL++K AVPFT++T G GRHAQ KLLN PG +C WPQKAT+++LD++ NAE+NAE+KG+DT  LYI HAQ N A KQRRRTYRAHGRI PYM++PAH+E+ILTEK  +V K  E    KLTRK+ A  R++ GGG
Sbjct:   38 MPSYSQEPEDQNTSAKARGRHLRVHYKHCREVCHTIKGYSLAKAKKFLGDVLEFKAAVPFTKYTGGPGRHAQGKLLNAPGDKCRWPQKATRIILDLVKNAEANAELKGLDTAKLYIAHAQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKENVAKAEEPKTTKLTRKRQAVLRLKSGGG 222          
BLAST of NO17G01860 vs. NCBI_GenBank
Match: GAY03080.1 (60S ribosomal protein L17-2 [Pythium insidiosum])

HSP 1 Score: 245.0 bits (624), Expect = 1.800e-61
Identity = 119/187 (63.64%), Postives = 149/187 (79.68%), Query Frame = 0
Query:    1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK----EAGAPKLTRKQAARVRV--GGG 182
            M  YS+EP+D  +AAKARGSHLRVHFKH REVCH + G  +SKAK FL+ VL+YK+AVPFT+FT G GRHAQ KL N PG +C WPQKATK++LD++ NAE+NAEVKG+DTD L+I HAQ N A KQRRRTYRAHGRI PYM++PAH+E+ILTEK  +V+K    +    K++RK+ A++R+  GGG
Sbjct:    1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVCHAIKGMPLSKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRNAPGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDKLFISHAQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKRENVQKAEEDKKVVVKVSRKRQAQLRLKSGGG 187          
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_009839365.1 (ribosomal protein L22 [Aphanomyces astaci] >ETV71119.1 ribosomal protein L22 [Aphanomyces astaci])

HSP 1 Score: 241.9 bits (616), Expect = 1.600e-60
Identity = 117/185 (63.24%), Postives = 146/185 (78.92%), Query Frame = 0
Query:    1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK--EAGAPKLTRKQAA--RVRVGGG 182
            M  YS+EP+D N +AKARG HLRVH+KH REVCHT+ G+ + KAK+FL DVL++K AVPFT++T G GRHAQ KLLN PG +C WPQKAT+++LD++ NAE+NAE+K +DT  LYI HAQ N A KQRRRTYRAHGRI PYM++PAH+E+ILTEK  +V K  E    KLTRK+ A  R++ GGG
Sbjct:    1 MPSYSQEPEDQNTSAKARGRHLRVHYKHCREVCHTIKGYSLVKAKKFLGDVLEFKAAVPFTKYTGGPGRHAQGKLLNAPGDKCRWPQKATRIILDLVKNAEANAELKELDTSKLYIAHAQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKDNVAKAEEPKTAKLTRKRQAVLRLKSGGG 185          
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_009515467.1 (hypothetical protein PHYSODRAFT_284211 [Phytophthora sojae] >EGZ28192.1 hypothetical protein PHYSODRAFT_284211 [Phytophthora sojae])

HSP 1 Score: 240.0 bits (611), Expect = 5.900e-60
Identity = 119/186 (63.98%), Postives = 146/186 (78.49%), Query Frame = 0
Query:    1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK---EAGAPKLTRKQAARVRV--GGG 182
            M  YS+EP+D  +AAKARGSHLRVHFKH REV H + G  ++KAK FL+ VL+YK+AVPFT+FT G GRHAQ KL    G +C WPQKATK++LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK  +V K   EA   K++RK+ A++R+  GGG
Sbjct:    1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAAEEAKPVKVSRKRQAQLRLKSGGG 186          
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_002906426.1 (60S ribosomal protein L17-2 [Phytophthora infestans T30-4] >XP_008911496.1 ribosomal protein L22 [Phytophthora parasitica INRA-310] >EEY65827.1 60S ribosomal protein L17-2 [Phytophthora infestans T30-4] >ETI37642.1 ribosomal protein L22 [Phytophthora parasitica P1569] >ETK77908.1 ribosomal protein L22 [Phytophthora parasitica] >ETL31341.1 ribosomal protein L22 [Phytophthora parasitica] >ETL84560.1 ribosomal protein L22 [Phytophthora parasitica] >ETM37700.1 ribosomal protein L22 [Phytophthora parasitica] >ETM40459.1 ribosomal protein L22 [Phytophthora parasitica] >ETN02952.1 ribosomal protein L22 [Phytophthora parasitica INRA-310] >ETO66436.1 ribosomal protein L22 [Phytophthora parasitica P1976] >ETP07551.1 ribosomal protein L22 [Phytophthora parasitica CJ01A1] >ETP35579.1 ribosomal protein L22 [Phytophthora parasitica P10297] >KUF89268.1 Fructose 1 [Phytophthora nicotianae])

HSP 1 Score: 240.0 bits (611), Expect = 5.900e-60
Identity = 119/186 (63.98%), Postives = 146/186 (78.49%), Query Frame = 0
Query:    1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK---EAGAPKLTRKQAARVRV--GGG 182
            M  YS+EP+D  +AAKARGSHLRVHFKH REV H + G  ++KAK FL+ VL+YK+AVPFT+FT G GRHAQ KL    G +C WPQKATK++LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK  +V K   EA   K++RK+ A++R+  GGG
Sbjct:    1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEEAKPVKVSRKRQAQLRLKSGGG 186          
BLAST of NO17G01860 vs. NCBI_GenBank
Match: OWZ24859.1 (60S ribosomal protein L17-2 [Phytophthora megakarya])

HSP 1 Score: 239.6 bits (610), Expect = 7.700e-60
Identity = 119/186 (63.98%), Postives = 146/186 (78.49%), Query Frame = 0
Query:    1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK---EAGAPKLTRKQAARVRV--GGG 182
            M  YS+EP+D  +AAKARGSHLRVHFKH REV H + G  ++KAK FL+ VL+YK+AVPFT+FT G GRHAQ KL    G +C WPQKATK++LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK  +V K   EA   K++RK+ A++R+  GGG
Sbjct:    1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKTFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEEAKPVKVSRKRQAQLRLKSGGG 186          
BLAST of NO17G01860 vs. NCBI_GenBank
Match: XP_024578112.1 (ribosomal protein l22 [Plasmopara halstedii] >CEG41743.1 ribosomal protein l22 [Plasmopara halstedii])

HSP 1 Score: 238.4 bits (607), Expect = 1.700e-59
Identity = 118/186 (63.44%), Postives = 145/186 (77.96%), Query Frame = 0
Query:    1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKK---EAGAPKLTRKQAARVRV--GGG 182
            M  YS+EP+D  +AAKARGSHLRVHFKH REV H + G  ++KAK FL+ VL+YK+AVPFT+FT G GRHAQ KL    G +C WPQKATK++LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK  +V K   E    K++RK+ A++R+  GGG
Sbjct:    1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVTHAIKGMPLNKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANTAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEETKPVKVSRKRQAQLRLKSGGG 186          
The following BLAST results are available for this feature:
BLAST of NO17G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24251.11.300e-9192.3160s ribosomal protein l17-2 [Nannochloropsis gadit... [more]
OQR93850.14.400e-6365.9560S ribosomal protein L17-2 [Achlya hypogyna][more]
XP_008612864.12.200e-6264.8650S ribosomal protein L22 [Saprolegnia diclina VS2... [more]
XP_008869568.11.100e-6163.78ribosomal protein L22 [Aphanomyces invadans] >ETW0... [more]
GAY03080.11.800e-6163.6460S ribosomal protein L17-2 [Pythium insidiosum][more]
XP_009839365.11.600e-6063.24ribosomal protein L22 [Aphanomyces astaci] >ETV711... [more]
XP_009515467.15.900e-6063.98hypothetical protein PHYSODRAFT_284211 [Phytophtho... [more]
XP_002906426.15.900e-6063.9860S ribosomal protein L17-2 [Phytophthora infestan... [more]
OWZ24859.17.700e-6063.9860S ribosomal protein L17-2 [Phytophthora megakary... [more]
XP_024578112.11.700e-5963.44ribosomal protein l22 [Plasmopara halstedii] >CEG4... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002969NSK002969Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01860.1NO17G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599729gene_7705Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g14gene6245Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01860.1NO17G01860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01860 ID=NO17G01860|Name=NO17G01860|organism=Nannochloropsis oceanica|type=gene|length=739bp
ATGGTCCGCTACAGCCGTGAGCCCGATGATCCCAACAAGGgtacgttatg
tgccctctcccctttccccctgtctcctctttgtcttgcttagtccttgg
ttcacctgggatcatccatcacccaccatgccctgagcttcctaagcatt
cgtattgtcactcgacgatccccatcgtcattatggcatctactaaccaa
ttcttgcctccaaccacaccatttaaatagCCGCCAAGGCCCGTGGCTCG
CATCTGCGCGTCCACTTCAAGCACGTCCGCGAAGTGTGCCACACCGTCAT
GGGTTGGCAGGTGAGTAAGGCCAAACAGTTCCTGGAGGACGTGCTGCAGT
ACAAGCGGGCGGTGCCCTTTACCCGCTTCACGCAGGGCGTGGGGCGACAC
GCCCAGGCCAAGCTCCTGAACGTACCTGGCTCTCAGTGTGCCTGGCCCCA
GAAGGCCACCAAGGTGGTGCTGGACATGCTCACCAACGCCGAGTCCAATG
CCGAGGTGAAGGGCATGGACACCGATAACCTCTACATCATTCACGCCCAG
ACTAATCGGGCGCCCAAGCAACGCCGACGAACCTACCGAGCCCACGGCCG
CATTAACCCCTACATGTCCAGTCCGGCTCACTTGGAGATTATCCTGACCG
AGAAGCCCGTGCATGTCAAAAAGGAGGCCGGTGCGCCCAAGCTTACCCGC
AAGCAGGCGGCCCGAGTGCGCGTCGGCGGTGGCAACTAA
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protein sequence of NO17G01860.1

>NO17G01860.1-protein ID=NO17G01860.1-protein|Name=NO17G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLED
VLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNA
ESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEI
ILTEKPVHVKKEAGAPKLTRKQAARVRVGGGN*
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Synonyms
Publications