NO17G01830.1, NO17G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01830.1
Unique NameNO17G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1560
Alignment locationchr17:526199..527758 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:526199..527758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01830.1 vs.
Match: EWM24218.1 (amino acid permease family protein [Nannochloropsis gaditana])

HSP 1 Score: 741.9 bits (1914), Expect = 1.400e-210
Identity = 373/493 (75.66%), Postives = 427/493 (86.61%), Query Frame = 0 
Query:    1 MNEAARPLLSGKAVTTLVTPPLSPRKDHQIGTAALAALIFFSVSGGPFGMEECVLAGGPLLSMVGLVVLPVLWSAPEALITAELAPAFPESAGSVAWVEAAFGPFWGWMKGFLSWLSGVTDNALYPVLICDYLVSFFEKEAEVIGVAHGIHRVLLLLGLTLVLTYLNWRGLDVVGNAAILLMGLCMLPFVVMCVAGIIQYQSLDFTRLGQLPEGGWGAVQWSSILNILFWQLNYWDSVSTFAGDVKDPGHAFPRALAVALFVVVLSTLLPLAVAVAGTTFSYSDYTDGFFGKIGTALVGKWLGVMVALAAALSSVGMFEAEMASDAFSLMGMAERGHLPALFAQRSRHGTPTAAILCSALGIAFLATMSFLEILEVLNFLYMLAMLIEFGAFVRLRVSRPLMRRPYRIPLGTAGVSVMLTGPVVLLVCMMAMAPLKAWAICGVAVMVGCGLYFALHHPATRRCCVFLQDPFEASSATAGAWEPLMVVQVYGTD 494
            M+E   PLL+ K    +V+PP    K+HQIGTAALAALIFFSVSGGPFGMEE V + GPL+++VGL+VLP+LWS PEALITAE APAF E +GSVAWVE+AFGPFWGWMKG+LSWLSGVTDNALYPVLI DYL SFF KEAE IGV  G+HRVLLLLGLTLVLTYLNWRGLDVVG AAI+LM LCMLPFV+MC+A ++QY  LD +RLG+LPEGGWGAVQWSS+LNILFWQLNYWDSV+TFAGDVK+PG AFPRALA+A+ +VVLSTL+PLA AV GT F+Y++YTDGFFGK+G+ LVGKWLG ++ALAAALSSVGMFEAEMASDAFSLMG+AERGHLPA FA RSRHGTP+AAI+CSA GI FLA+MSFLEI++VLNFLYMLAMLIEF AFVRLRV  P + RPYRIPLGT G+  ML+GPV+LLVCM+AMAPLK W ICGVAV++GCGLY+ LHHP TRR CVFLQDPFE     + +     V++VYGTD
Sbjct:    1 MSETIAPLLAAKKAV-IVSPPSPSPKEHQIGTAALAALIFFSVSGGPFGMEEAVQSAGPLVTIVGLLVLPMLWSVPEALITAECAPAFAEPSGSVAWVESAFGPFWGWMKGYLSWLSGVTDNALYPVLIADYLTSFFHKEAETIGVVDGLHRVLLLLGLTLVLTYLNWRGLDVVGTAAIVLMTLCMLPFVIMCIAALVQYNKLDGSRLGELPEGGWGAVQWSSLLNILFWQLNYWDSVATFAGDVKNPGKAFPRALAIAVALVVLSTLVPLATAVTGTRFAYTEYTDGFFGKVGSDLVGKWLGALIALAAALSSVGMFEAEMASDAFSLMGLAERGHLPAFFAHRSRHGTPSAAIVCSACGITFLASMSFLEIVQVLNFLYMLAMLIEFAAFVRLRVVLPCLPRPYRIPLGTWGICAMLSGPVMLLVCMLAMAPLKTWLICGVAVLMGCGLYYVLHHPCTRRRCVFLQDPFERRRDASTS----SVLRVYGTD 488
The following BLAST results are available for this feature:
BLAST of NO17G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24218.11.400e-21075.66amino acid permease family protein [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01830NO17G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01830.1NO17G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01830.1.cds1NO17G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01830.1 ID=NO17G01830.1|Name=NO17G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp
ATGAATGAAGCCGCCAGGCCCTTACTGTCTGGTAAGGCAGTCACGACTCT
CGTTACCCCACCCTTGTCCCCACGCAAGGATCATCAAATTGGTACCGCAG
CATTGGCTGCCTTGATATTCTTCAGCGTTAGTGGTGGGCCCTTCGGAATG
GAAGAATGCGTGTTGGCAGGAGGCCCTCTTCTGAGCATGGTTGGCCTTGT
CGTGCTTCCCGTGCTTTGGTCAGCACCGGAGGCCCTTATTACCGCGGAAC
TCGCCCCTGCCTTCCCTGAAAGCGCAGGGTCAGTGGCGTGGGTGGAGGCA
GCCTTTGGCCCCTTTTGGGGTTGGATGAAAGGCTTTCTTTCTTGGCTCAG
TGGCGTGACGGACAACGCACTGTATCCCGTCCTTATCTGCGACTACCTGG
TCTCGTTCTTTGAAAAGGAAGCCGAGGTAATTGGCGTCGCCCACGGGATC
CACCGCGTCTTGCTCTTGCTAGGCCTGACGCTGGTGCTCACGTACCTCAA
CTGGCGCGGGTTGGACGTGGTGGGTAATGCGGCTATTTTATTGATGGGAC
TATGTATGCTGCCGTTTGTCGTGATGTGTGTCGCGGGCATCATCCAGTAC
CAGAGCCTTGATTTTACGCGGCTGGGCCAGTTACCCGAAGGAGGATGGGG
GGCCGTGCAATGGTCGAGCATTCTCAACATTTTATTTTGGCAACTCAACT
ATTGGGACTCTGTTTCCACCTTTGCAGGCGATGTCAAGGACCCCGGCCAT
GCCTTTCCACGGGCCCTGGCCGTTGCACTGTTTGTGGTGGTGCTTAGCAC
CCTCCTCCCGCTAGCCGTCGCCGTGGCGGGCACGACTTTTTCGTACAGTG
ATTATACGGACGGGTTCTTCGGGAAGATTGGCACGGCTTTGGTGGGAAAG
TGGCTGGGGGTGATGGTTGCGCTGGCGGCGGCCTTGTCGTCGGTGGGCAT
GTTTGAGGCAGAGATGGCAAGCGATGCCTTCTCGCTCATGGGCATGGCGG
AGCGAGGGCATCTCCCTGCACTCTTTGCCCAGCGCTCACGGCACGGAACG
CCTACTGCTGCCATTTTATGTTCCGCTCTCGGTATCGCTTTCTTGGCGAC
CATGTCCTTTTTGGAAATACTGGAAGTGCTGAACTTTTTGTACATGCTGG
CCATGCTGATTGAGTTTGGCGCCTTTGTTCGCCTGCGCGTGTCGCGGCCT
CTAATGCGTCGGCCATACCGTATCCCGCTCGGCACGGCTGGAGTGAGCGT
GATGTTGACGGGGCCCGTGGTCTTGTTGGTCTGCATGATGGCCATGGCTC
CTCTGAAAGCTTGGGCCATCTGCGGGGTGGCTGTGATGGTGGGATGTGGG
TTGTACTTTGCCCTGCACCACCCTGCCACGCGCCGGTGTTGCGTCTTTTT
GCAGGATCCATTTGAAGCTTCGAGTGCCACAGCGGGTGCATGGGAGCCCC
TAATGGTCGTGCAGGTTTACGGGACAGACGTAGTGGAGGAGGGGGAGGGG
GAAGAGGAGGAAGAGAAGGAGGAGAGGAAGAAGGGGACGGGGGTGATGCC
ATACGTGTGA
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protein sequence of NO17G01830.1

>NO17G01830.1-protein ID=NO17G01830.1-protein|Name=NO17G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MNEAARPLLSGKAVTTLVTPPLSPRKDHQIGTAALAALIFFSVSGGPFGM
EECVLAGGPLLSMVGLVVLPVLWSAPEALITAELAPAFPESAGSVAWVEA
AFGPFWGWMKGFLSWLSGVTDNALYPVLICDYLVSFFEKEAEVIGVAHGI
HRVLLLLGLTLVLTYLNWRGLDVVGNAAILLMGLCMLPFVVMCVAGIIQY
QSLDFTRLGQLPEGGWGAVQWSSILNILFWQLNYWDSVSTFAGDVKDPGH
AFPRALAVALFVVVLSTLLPLAVAVAGTTFSYSDYTDGFFGKIGTALVGK
WLGVMVALAAALSSVGMFEAEMASDAFSLMGMAERGHLPALFAQRSRHGT
PTAAILCSALGIAFLATMSFLEILEVLNFLYMLAMLIEFGAFVRLRVSRP
LMRRPYRIPLGTAGVSVMLTGPVVLLVCMMAMAPLKAWAICGVAVMVGCG
LYFALHHPATRRCCVFLQDPFEASSATAGAWEPLMVVQVYGTDVVEEGEG
EEEEEKEERKKGTGVMPYV*
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mRNA from alignment at chr17:526199..527758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01830.1 ID=NO17G01830.1|Name=NO17G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp|location=Sequence derived from alignment at chr17:526199..527758+ (Nannochloropsis oceanica)
ATGAATGAAGCCGCCAGGCCCTTACTGTCTGGTAAGGCAGTCACGACTCT
CGTTACCCCACCCTTGTCCCCACGCAAGGATCATCAAATTGGTACCGCAG
CATTGGCTGCCTTGATATTCTTCAGCGTTAGTGGTGGGCCCTTCGGAATG
GAAGAATGCGTGTTGGCAGGAGGCCCTCTTCTGAGCATGGTTGGCCTTGT
CGTGCTTCCCGTGCTTTGGTCAGCACCGGAGGCCCTTATTACCGCGGAAC
TCGCCCCTGCCTTCCCTGAAAGCGCAGGGTCAGTGGCGTGGGTGGAGGCA
GCCTTTGGCCCCTTTTGGGGTTGGATGAAAGGCTTTCTTTCTTGGCTCAG
TGGCGTGACGGACAACGCACTGTATCCCGTCCTTATCTGCGACTACCTGG
TCTCGTTCTTTGAAAAGGAAGCCGAGGTAATTGGCGTCGCCCACGGGATC
CACCGCGTCTTGCTCTTGCTAGGCCTGACGCTGGTGCTCACGTACCTCAA
CTGGCGCGGGTTGGACGTGGTGGGTAATGCGGCTATTTTATTGATGGGAC
TATGTATGCTGCCGTTTGTCGTGATGTGTGTCGCGGGCATCATCCAGTAC
CAGAGCCTTGATTTTACGCGGCTGGGCCAGTTACCCGAAGGAGGATGGGG
GGCCGTGCAATGGTCGAGCATTCTCAACATTTTATTTTGGCAACTCAACT
ATTGGGACTCTGTTTCCACCTTTGCAGGCGATGTCAAGGACCCCGGCCAT
GCCTTTCCACGGGCCCTGGCCGTTGCACTGTTTGTGGTGGTGCTTAGCAC
CCTCCTCCCGCTAGCCGTCGCCGTGGCGGGCACGACTTTTTCGTACAGTG
ATTATACGGACGGGTTCTTCGGGAAGATTGGCACGGCTTTGGTGGGAAAG
TGGCTGGGGGTGATGGTTGCGCTGGCGGCGGCCTTGTCGTCGGTGGGCAT
GTTTGAGGCAGAGATGGCAAGCGATGCCTTCTCGCTCATGGGCATGGCGG
AGCGAGGGCATCTCCCTGCACTCTTTGCCCAGCGCTCACGGCACGGAACG
CCTACTGCTGCCATTTTATGTTCCGCTCTCGGTATCGCTTTCTTGGCGAC
CATGTCCTTTTTGGAAATACTGGAAGTGCTGAACTTTTTGTACATGCTGG
CCATGCTGATTGAGTTTGGCGCCTTTGTTCGCCTGCGCGTGTCGCGGCCT
CTAATGCGTCGGCCATACCGTATCCCGCTCGGCACGGCTGGAGTGAGCGT
GATGTTGACGGGGCCCGTGGTCTTGTTGGTCTGCATGATGGCCATGGCTC
CTCTGAAAGCTTGGGCCATCTGCGGGGTGGCTGTGATGGTGGGATGTGGG
TTGTACTTTGCCCTGCACCACCCTGCCACGCGCCGGTGTTGCGTCTTTTT
GCAGGATCCATTTGAAGCTTCGAGTGCCACAGCGGGTGCATGGGAGCCCC
TAATGGTCGTGCAGGTTTACGGGACAGACGTAGTGGAGGAGGGGGAGGGG
GAAGAGGAGGAAGAGAAGGAGGAGAGGAAGAAGGGGACGGGGGTGATGCC
ATACGTGTGA
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Coding sequence (CDS) from alignment at chr17:526199..527758+

>NO17G01830.1 ID=NO17G01830.1|Name=NO17G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at chr17:526199..527758+ (Nannochloropsis oceanica)
ATGAATGAAGCCGCCAGGCCCTTACTGTCTGGTAAGGCAGTCACGACTCT
CGTTACCCCACCCTTGTCCCCACGCAAGGATCATCAAATTGGTACCGCAG
CATTGGCTGCCTTGATATTCTTCAGCGTTAGTGGTGGGCCCTTCGGAATG
GAAGAATGCGTGTTGGCAGGAGGCCCTCTTCTGAGCATGGTTGGCCTTGT
CGTGCTTCCCGTGCTTTGGTCAGCACCGGAGGCCCTTATTACCGCGGAAC
TCGCCCCTGCCTTCCCTGAAAGCGCAGGGTCAGTGGCGTGGGTGGAGGCA
GCCTTTGGCCCCTTTTGGGGTTGGATGAAAGGCTTTCTTTCTTGGCTCAG
TGGCGTGACGGACAACGCACTGTATCCCGTCCTTATCTGCGACTACCTGG
TCTCGTTCTTTGAAAAGGAAGCCGAGGTAATTGGCGTCGCCCACGGGATC
CACCGCGTCTTGCTCTTGCTAGGCCTGACGCTGGTGCTCACGTACCTCAA
CTGGCGCGGGTTGGACGTGGTGGGTAATGCGGCTATTTTATTGATGGGAC
TATGTATGCTGCCGTTTGTCGTGATGTGTGTCGCGGGCATCATCCAGTAC
CAGAGCCTTGATTTTACGCGGCTGGGCCAGTTACCCGAAGGAGGATGGGG
GGCCGTGCAATGGTCGAGCATTCTCAACATTTTATTTTGGCAACTCAACT
ATTGGGACTCTGTTTCCACCTTTGCAGGCGATGTCAAGGACCCCGGCCAT
GCCTTTCCACGGGCCCTGGCCGTTGCACTGTTTGTGGTGGTGCTTAGCAC
CCTCCTCCCGCTAGCCGTCGCCGTGGCGGGCACGACTTTTTCGTACAGTG
ATTATACGGACGGGTTCTTCGGGAAGATTGGCACGGCTTTGGTGGGAAAG
TGGCTGGGGGTGATGGTTGCGCTGGCGGCGGCCTTGTCGTCGGTGGGCAT
GTTTGAGGCAGAGATGGCAAGCGATGCCTTCTCGCTCATGGGCATGGCGG
AGCGAGGGCATCTCCCTGCACTCTTTGCCCAGCGCTCACGGCACGGAACG
CCTACTGCTGCCATTTTATGTTCCGCTCTCGGTATCGCTTTCTTGGCGAC
CATGTCCTTTTTGGAAATACTGGAAGTGCTGAACTTTTTGTACATGCTGG
CCATGCTGATTGAGTTTGGCGCCTTTGTTCGCCTGCGCGTGTCGCGGCCT
CTAATGCGTCGGCCATACCGTATCCCGCTCGGCACGGCTGGAGTGAGCGT
GATGTTGACGGGGCCCGTGGTCTTGTTGGTCTGCATGATGGCCATGGCTC
CTCTGAAAGCTTGGGCCATCTGCGGGGTGGCTGTGATGGTGGGATGTGGG
TTGTACTTTGCCCTGCACCACCCTGCCACGCGCCGGTGTTGCGTCTTTTT
GCAGGATCCATTTGAAGCTTCGAGTGCCACAGCGGGTGCATGGGAGCCCC
TAATGGTCGTGCAGGTTTACGGGACAGACGTAGTGGAGGAGGGGGAGGGG
GAAGAGGAGGAAGAGAAGGAGGAGAGGAAGAAGGGGACGGGGGTGATGCC
ATACGTGTGA
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Synonyms
Publications