NO17G01310.2, NO17G01310.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01310.2
Unique NameNO17G01310.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1672
Alignment locationchr17:405531..407788 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:405531..407788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01310.2 vs.
Match: EWM24269.1 (abortive infection protein [Nannochloropsis gaditana])

HSP 1 Score: 307.8 bits (787), Expect = 4.600e-80
Identity = 183/325 (56.31%), Postives = 221/325 (68.00%), Query Frame = 0 
Query:   11 YGSAVMAVRLVPLPVLLFFFINLTALSTQAFVPTQARPPLPLSSVRPGL--KSFFGPQPSLFPRWPSCPNTQRGVQSTKLCSKKQ--QQDTPQQLKLNALEDLERRLKGYGGDEKSTVPFAYVTQTPKGKQRILLPPGPNQLLIAFSIIMALGLGALGQLVGSFISVLPFATLSLQPSQFALGALLALPLFAVDAVLQGLQEDTASEVYALSIFGTKTPAGLVLLLAAAVTLATAIGEEALFRGLIQQGIAQIFGPYLGLGIAAGVFGLAHKMGPSDVLFITLSGAYMGGIFLLYGDLTITIALHASYDFLILCGAYLRAKRRIS 332
            +G+AV  + +  L  L+F          QAF+    R P P  S+   L       P  +  PR P   +    + S+   SK Q  Q D     K N LED E+RL+G     + +   AYV +TP+GKQRI LPPGPN+LLI FSIIMA  L ALG  VG F+ V P ATLSLQP+ F LGA+LA+PLF +DA+LQ +QEDTASEVY+LSIFGT TP   V+ LAAAVTLAT +GEE LFRGLIQQGIA + GP++GL + AGVFGLAHKMGPSDVLFI+LSGAYMG +FL YGDLT+ IA HA+YDFLILCGAY RAK+R+S
Sbjct:   87 FGTAVSRLFVSALVYLVF-----AGSIVQAFLVP--RLPCPFHSLSAPLLRDKISAPSSAFVPRLPYAADYTYSMHSSVRWSKPQRSQDDVRYSTKQNVLEDFEQRLRGSNAQSEESP--AYVAETPRGKQRIPLPPGPNRLLILFSIIMAAALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSVVALAAAVTLATGVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFISLSGAYMGLVFLQYGDLTVPIATHATYDFLILCGAYFRAKKRMS 402
The following BLAST results are available for this feature:
BLAST of NO17G01310.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24269.14.600e-8056.31abortive infection protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01310NO17G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01310.2NO17G01310.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01310.2.cds1NO17G01310.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01310.2.cds2NO17G01310.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01310.2.cds3NO17G01310.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01310.2.cds4NO17G01310.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01310.2 ID=NO17G01310.2|Name=NO17G01310.2|organism=Nannochloropsis oceanica|type=mRNA|length=1672bp
ACAGCTTTGTACGTGCTTTGGATCGGCTTCCGGAGGTTTCCTGGACCTTT
TTCCTCGCTCCTCGCTCCAAGCCCGTCTGTTTCGCACCACACCTTATGTC
CCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGCCGTCC
GCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAACAGCG
CTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTGCCTCT
GTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCCCAGCC
TCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTCAGAGC
ACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAGCTAAA
GTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGGTGGAG
ACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCAAGGGC
AAACAACGCATCCTCCTCCCTCCAGGCCCTAATCAACTTTTAATTGCTTT
CAGCATCATTATGGCCTTAGGTTTGGGAGCCTTAGGACAACTCGTAGGTT
CCTTCATAAGCGTCCTCCCCTTCGCGACCCTTTCACTCCAACCTTCCCAG
TTCGCGCTCGGCGCTCTCCTAGCCCTCCCTCTTTTTGCAGTCGACGCTGT
GCTTCAAGGATTGCAAGAAGACACAGCTAGCGAGGTTTATGCCCTCTCAA
TCTTCGGCACCAAGACCCCTGCCGGCCTTGTCCTCCTCCTCGCTGCTGCC
GTCACATTGGCGACAGCCATTGGGGAAGAAGCGCTTTTTCGAGGATTGAT
TCAACAGGGGATTGCTCAGATTTTCGGTCCTTACTTAGGGCTTGGAATAG
CAGCAGGCGTGTTTGGCTTAGCTCACAAAATGGGGCCATCCGATGTCCTT
TTTATTACCCTTTCAGGGGCATATATGGGGGGCATCTTCTTGCTCTATGG
GGACTTGACAATTACTATTGCGTTGCATGCGAGTTATGATTTTTTGATTT
TGTGTGGAGCATATCTGAGGGCGAAGAGGAGGATTTCGGAGGGGAAAGGG
GGGATGATGGTGTTGGAAGAGGAAAAGGAAAGGAAGGAGGGGGGAGGGAA
GAAGGAAAGTAGTGGTGGAGAAGAATAGTTTTGTCTCATTTTTCTTCATG
GGAAATATAGAACAAAAAAGGAGATGAATAATGGAGCGAGTGAAAGGTAG
GCTAGATCATATTATTGTTTTCTATTTGTACATTGTGTGCAGTGTAACTG
ATTGGTGCGGTGACATTAACAGCAGCAGCAGCAGCAGCTGTGCAGTACAG
ACATATAGGTGGATAAGCGTGAGGACCATGAGATTTGGTTTTCTCCGCCT
TTTTCTGGCGCTTTAGTTTGATGCAAAAATGCATGCGTCAGAAGTGTTAG
AAGAAAGATAGTCATCGGCGAGTCACGTACGCATAGAGAGAGAAGTCAAG
AACATCGGCAGTGAAATACCACGCTTCCGGTGGGGGCAATGACATTCATT
GCTCTCTTGCGAGCGAGACAATTTGTCTCGGTAAAAGTCTCTTACGTACA
GAAAAGAGAGCTGCTCACGTGGCAGGACGGCAACCGTCTTCGAAGGAATT
AAAAAAAAAACTGTGCAGAGAG
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protein sequence of NO17G01310.2

>NO17G01310.2-protein ID=NO17G01310.2-protein|Name=NO17G01310.2|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MSLQERRHARYGSAVMAVRLVPLPVLLFFFINLTALSTQAFVPTQARPPL
PLSSVRPGLKSFFGPQPSLFPRWPSCPNTQRGVQSTKLCSKKQQQDTPQQ
LKLNALEDLERRLKGYGGDEKSTVPFAYVTQTPKGKQRILLPPGPNQLLI
AFSIIMALGLGALGQLVGSFISVLPFATLSLQPSQFALGALLALPLFAVD
AVLQGLQEDTASEVYALSIFGTKTPAGLVLLLAAAVTLATAIGEEALFRG
LIQQGIAQIFGPYLGLGIAAGVFGLAHKMGPSDVLFITLSGAYMGGIFLL
YGDLTITIALHASYDFLILCGAYLRAKRRISEGKGGMMVLEEEKERKEGG
GKKESSGGEE*
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mRNA from alignment at chr17:405531..407788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01310.2 ID=NO17G01310.2|Name=NO17G01310.2|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp|location=Sequence derived from alignment at chr17:405531..407788- (Nannochloropsis oceanica)
ACAGCTTTGTACGTGCTTTGGATCGGCTTCCGGAGGTTTCCTGGACCTTT
TTCCTCGCTCCTCGCTCCAAGCCCGTCTGTTTCGCACCACACCTTATGTC
CCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGCCGTCC
GCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAACAGCG
CTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTGCCTCT
GTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCCCAGCC
TCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTCAGAGC
ACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAGCTAAA
GTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGGTGGAG
ACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCAAGGGC
AAAGTAAGTTTCCTTGATGGGTGGTGGGTGCGACAGTTCCACTTACTCAA
TCGTTCTTTCTGTTGGCTTGTGAGTCACTTTGTCTAACCGCCTCATTCTC
TGCCTTCCTCCTTTCCGCACAGCAACGCATCCTCCTCCCTCCAGGCCCTA
ATCAACTTTTAATTGCTTTCAGCATCATTATGGCCTTAGGTTTGGGAGCC
TTAGGACAACTCGTAGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCT
TTCACTCCAACCTTCCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTC
TTTTTGCAGTCGACGCTGGTAGGTAGATGTGGGGAGGCAGTAAGGGGGGC
GAAGGGTGAAGGATACATCTATTCTGTGGAAAGAAATGCTTGACATCTGA
AATGTATGCTGACTGGACACAGTATTGCTCCTTCTTGGTGTCCTAAATAC
TCCAAGGAGTGCAAGAAGACACAAGTAGTGAGCTCTAGGTCCTCTCAAAT
CGGTACCAAGAAACGGCCAGCCTCGTCCAAATCCGCCCTAACCCATGCCG
CTCTATTTTTATTTTACATTCCACATTTATAGTGCTTCAAGGATTGCAAG
AAGACACAGCTAGCGAGGTTTATGCCCTCTCAATCTTCGGCACCAAGACC
CCTGCCGGCCTTGTCCTCCTCCTCGCTGCTGCCGTCACATTGGCGACAGC
CATTGGGGAAGAAGCGCTTTTTCGAGGATTGATTCAACAGGGGATTGCTC
AGGTAAGTGATTTTAGTTCACGATGTTTGGGGTGGGTGGGGCATTGACTG
TCTATCTCACATGGCAGGGTCCGAGGTAGATAGGGGTAATGATCGATTGG
AACGGCAGGAGAGCAGCAACAACAGAACGGCCGGAGAGCAGCAACAGCAG
CAGCCGAGGTTGAACAATATTTCCCGTCCCTCCGACTATCTAATATATCA
CACAGATTTTCGGTCCTTACTTAGGGCTTGGAATAGCAGCAGGCGTGTTT
GGCTTAGCTCACAAAATGGGGCCATCCGATGTCCTTTTTATTACCCTTTC
AGGGGCATATATGGGGGGCATCTTCTTGCTCTATGGGGACTTGACAATTA
CTATTGCGTTGCATGCGAGTTATGATTTTTTGATTTTGTGTGGAGCATAT
CTGAGGGCGAAGAGGAGGATTTCGGAGGGGAAAGGGGGGATGATGGTGTT
GGAAGAGGAAAAGGAAAGGAAGGAGGGGGGAGGGAAGAAGGAAAGTAGTG
GTGGAGAAGAATAGTTTTGTCTCATTTTTCTTCATGGGAAATATAGAACA
AAAAAGGAGATGAATAATGGAGCGAGTGAAAGGTAGGCTAGATCATATTA
TTGTTTTCTATTTGTACATTGTGTGCAGTGTAACTGATTGGTGCGGTGAC
ATTAACAGCAGCAGCAGCAGCAGCTGTGCAGTACAGACATATAGGTGGAT
AAGCGTGAGGACCATGAGATTTGGTTTTCTCCGCCTTTTTCTGGCGCTTT
AGTTTGATGCAAAAATGCATGCGTCAGAAGTGTTAGAAGAAAGATAGTCA
TCGGCGAGTCACGTACGCATAGAGAGAGAAGTCAAGAACATCGGCAGTGA
AATACCACGCTTCCGGTGGGGGCAATGACATTCATTGCTCTCTTGCGAGC
GAGACAATTTGTCTCGGTAAAAGTCTCTTACGTACAGAAAAGAGAGCTGC
TCACGTGGCAGGACGGCAACCGTCTTCGAAGGAATTAAAAAAAAAACTGT
GCAGAGAG
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Coding sequence (CDS) from alignment at chr17:405531..407788-

>NO17G01310.2 ID=NO17G01310.2|Name=NO17G01310.2|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr17:405531..407788- (Nannochloropsis oceanica)
ATGTCCCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGC
CGTCCGCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAA
CAGCGCTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTG
CCTCTGTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCC
CAGCCTCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTC
AGAGCACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAG
CTAAAGTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGG
TGGAGACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCA
AGGGCAAACAACGCATCCTCCTCCCTCCAGGCCCTAATCAACTTTTAATT
GCTTTCAGCATCATTATGGCCTTAGGTTTGGGAGCCTTAGGACAACTCGT
AGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCTTTCACTCCAACCTT
CCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTCTTTTTGCAGTCGAC
GCTGTGCTTCAAGGATTGCAAGAAGACACAGCTAGCGAGGTTTATGCCCT
CTCAATCTTCGGCACCAAGACCCCTGCCGGCCTTGTCCTCCTCCTCGCTG
CTGCCGTCACATTGGCGACAGCCATTGGGGAAGAAGCGCTTTTTCGAGGA
TTGATTCAACAGGGGATTGCTCAGATTTTCGGTCCTTACTTAGGGCTTGG
AATAGCAGCAGGCGTGTTTGGCTTAGCTCACAAAATGGGGCCATCCGATG
TCCTTTTTATTACCCTTTCAGGGGCATATATGGGGGGCATCTTCTTGCTC
TATGGGGACTTGACAATTACTATTGCGTTGCATGCGAGTTATGATTTTTT
GATTTTGTGTGGAGCATATCTGAGGGCGAAGAGGAGGATTTCGGAGGGGA
AAGGGGGGATGATGGTGTTGGAAGAGGAAAAGGAAAGGAAGGAGGGGGGA
GGGAAGAAGGAAAGTAGTGGTGGAGAAGAATAG
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Synonyms
Publications