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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:405531..407788 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01310.1 vs.
Match: EWM24269.1 (abortive infection protein [Nannochloropsis gaditana]) HSP 1 Score: 197.2 bits (500), Expect = 6.300e-47 Identity = 128/251 (51.00%), Postives = 156/251 (62.15%), Query Frame = 0
Query: 11 YGSAVMAVRLVPLPVLLFFFINLTALSTQAFVPTQARPPLPLSSVRPGL--KSFFGPQPSLFPRWPSCPNTQRGVQSTKLCSKKQ--QQDTPQQLKLNALEDLERRLKGYGGDEKSTVPFAYVTQTPKGKQRILLPPGPNQLLIAFSIIMALGLGALGQLVGSFISVLPFATLSLQPSQFALGALLALPLFAVDAVLQGLQEDTASEVYALSIFGTKTPAGLVLLLAAAVTLATAIGEEALFRGLIQQGIA 258
+G+AV + + L L+F QAF+ R P P S+ L P + PR P + + S+ SK Q Q D K N LED E+RL+G + + AYV +TP+GKQRI LPPGPN+LLI FSIIMA L ALG VG F+ V P ATLSLQP+ F LGA+LA+PLF +DA+LQ +QEDTASEVY+LSIFGT TP V+ LAAAVTLAT +GEE LFRGLIQQGIA
Sbjct: 87 FGTAVSRLFVSALVYLVF-----AGSIVQAFLVP--RLPCPFHSLSAPLLRDKISAPSSAFVPRLPYAADYTYSMHSSVRWSKPQRSQDDVRYSTKQNVLEDFEQRLRGSNAQSEESP--AYVAETPRGKQRIPLPPGPNRLLILFSIIMAAALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSVVALAAAVTLATGVGEETLFRGLIQQGIA 328
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G01310.1 ID=NO17G01310.1|Name=NO17G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1810bp ACAGCTTTGTACGTGCTTTGGATCGGCTTCCGGAGGTTTCCTGGACCTTT TTCCTCGCTCCTCGCTCCAAGCCCGTCTGTTTCGCACCACACCTTATGTC CCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGCCGTCC GCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAACAGCG CTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTGCCTCT GTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCCCAGCC TCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTCAGAGC ACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAGCTAAA GTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGGTGGAG ACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCAAGGGC AAACAACGCATCCTCCTCCCTCCAGGCCCTAATCAACTTTTAATTGCTTT CAGCATCATTATGGCCTTAGGTTTGGGAGCCTTAGGACAACTCGTAGGTT CCTTCATAAGCGTCCTCCCCTTCGCGACCCTTTCACTCCAACCTTCCCAG TTCGCGCTCGGCGCTCTCCTAGCCCTCCCTCTTTTTGCAGTCGACGCTGT GCTTCAAGGATTGCAAGAAGACACAGCTAGCGAGGTTTATGCCCTCTCAA TCTTCGGCACCAAGACCCCTGCCGGCCTTGTCCTCCTCCTCGCTGCTGCC GTCACATTGGCGACAGCCATTGGGGAAGAAGCGCTTTTTCGAGGATTGAT TCAACAGGGGATTGCTCAGGGTCCGAGGTAGATAGGGGTAATGATCGATT GGAACGGCAGGAGAGCAGCAACAACAGAACGGCCGGAGAGCAGCAACAGC AGCAGCCGAGGTTGAACAATATTTCCCGTCCCTCCGACTATCTAATATAT CACACAGATTTTCGGTCCTTACTTAGGGCTTGGAATAGCAGCAGGCGTGT TTGGCTTAGCTCACAAAATGGGGCCATCCGATGTCCTTTTTATTACCCTT TCAGGGGCATATATGGGGGGCATCTTCTTGCTCTATGGGGACTTGACAAT TACTATTGCGTTGCATGCGAGTTATGATTTTTTGATTTTGTGTGGAGCAT ATCTGAGGGCGAAGAGGAGGATTTCGGAGGGGAAAGGGGGGATGATGGTG TTGGAAGAGGAAAAGGAAAGGAAGGAGGGGGGAGGGAAGAAGGAAAGTAG TGGTGGAGAAGAATAGTTTTGTCTCATTTTTCTTCATGGGAAATATAGAA CAAAAAAGGAGATGAATAATGGAGCGAGTGAAAGGTAGGCTAGATCATAT TATTGTTTTCTATTTGTACATTGTGTGCAGTGTAACTGATTGGTGCGGTG ACATTAACAGCAGCAGCAGCAGCAGCTGTGCAGTACAGACATATAGGTGG ATAAGCGTGAGGACCATGAGATTTGGTTTTCTCCGCCTTTTTCTGGCGCT TTAGTTTGATGCAAAAATGCATGCGTCAGAAGTGTTAGAAGAAAGATAGT CATCGGCGAGTCACGTACGCATAGAGAGAGAAGTCAAGAACATCGGCAGT GAAATACCACGCTTCCGGTGGGGGCAATGACATTCATTGCTCTCTTGCGA GCGAGACAATTTGTCTCGGTAAAAGTCTCTTACGTACAGAAAAGAGAGCT GCTCACGTGGCAGGACGGCAACCGTCTTCGAAGGAATTAAAAAAAAAACT GTGCAGAGAG back to topprotein sequence of NO17G01310.1 >NO17G01310.1-protein ID=NO17G01310.1-protein|Name=NO17G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp MSLQERRHARYGSAVMAVRLVPLPVLLFFFINLTALSTQAFVPTQARPPL PLSSVRPGLKSFFGPQPSLFPRWPSCPNTQRGVQSTKLCSKKQQQDTPQQ LKLNALEDLERRLKGYGGDEKSTVPFAYVTQTPKGKQRILLPPGPNQLLI AFSIIMALGLGALGQLVGSFISVLPFATLSLQPSQFALGALLALPLFAVD AVLQGLQEDTASEVYALSIFGTKTPAGLVLLLAAAVTLATAIGEEALFRG LIQQGIAQGPR* back to topmRNA from alignment at chr17:405531..407788- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G01310.1 ID=NO17G01310.1|Name=NO17G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp|location=Sequence derived from alignment at chr17:405531..407788- (Nannochloropsis oceanica) ACAGCTTTGTACGTGCTTTGGATCGGCTTCCGGAGGTTTCCTGGACCTTT
TTCCTCGCTCCTCGCTCCAAGCCCGTCTGTTTCGCACCACACCTTATGTC
CCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGCCGTCC
GCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAACAGCG
CTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTGCCTCT
GTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCCCAGCC
TCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTCAGAGC
ACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAGCTAAA
GTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGGTGGAG
ACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCAAGGGC
AAAGTAAGTTTCCTTGATGGGTGGTGGGTGCGACAGTTCCACTTACTCAA
TCGTTCTTTCTGTTGGCTTGTGAGTCACTTTGTCTAACCGCCTCATTCTC
TGCCTTCCTCCTTTCCGCACAGCAACGCATCCTCCTCCCTCCAGGCCCTA
ATCAACTTTTAATTGCTTTCAGCATCATTATGGCCTTAGGTTTGGGAGCC
TTAGGACAACTCGTAGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCT
TTCACTCCAACCTTCCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTC
TTTTTGCAGTCGACGCTGGTAGGTAGATGTGGGGAGGCAGTAAGGGGGGC
GAAGGGTGAAGGATACATCTATTCTGTGGAAAGAAATGCTTGACATCTGA
AATGTATGCTGACTGGACACAGTATTGCTCCTTCTTGGTGTCCTAAATAC
TCCAAGGAGTGCAAGAAGACACAAGTAGTGAGCTCTAGGTCCTCTCAAAT
CGGTACCAAGAAACGGCCAGCCTCGTCCAAATCCGCCCTAACCCATGCCG
CTCTATTTTTATTTTACATTCCACATTTATAGTGCTTCAAGGATTGCAAG
AAGACACAGCTAGCGAGGTTTATGCCCTCTCAATCTTCGGCACCAAGACC
CCTGCCGGCCTTGTCCTCCTCCTCGCTGCTGCCGTCACATTGGCGACAGC
CATTGGGGAAGAAGCGCTTTTTCGAGGATTGATTCAACAGGGGATTGCTC
AGGTAAGTGATTTTAGTTCACGATGTTTGGGGTGGGTGGGGCATTGACTG
TCTATCTCACATGGCAGGGTCCGAGGTAGATAGGGGTAATGATCGATTGG
AACGGCAGGAGAGCAGCAACAACAGAACGGCCGGAGAGCAGCAACAGCAG
CAGCCGAGGTTGAACAATATTTCCCGTCCCTCCGACTATCTAATATATCA
CACAGATTTTCGGTCCTTACTTAGGGCTTGGAATAGCAGCAGGCGTGTTT
GGCTTAGCTCACAAAATGGGGCCATCCGATGTCCTTTTTATTACCCTTTC
AGGGGCATATATGGGGGGCATCTTCTTGCTCTATGGGGACTTGACAATTA
CTATTGCGTTGCATGCGAGTTATGATTTTTTGATTTTGTGTGGAGCATAT
CTGAGGGCGAAGAGGAGGATTTCGGAGGGGAAAGGGGGGATGATGGTGTT
GGAAGAGGAAAAGGAAAGGAAGGAGGGGGGAGGGAAGAAGGAAAGTAGTG
GTGGAGAAGAATAGTTTTGTCTCATTTTTCTTCATGGGAAATATAGAACA
AAAAAGGAGATGAATAATGGAGCGAGTGAAAGGTAGGCTAGATCATATTA
TTGTTTTCTATTTGTACATTGTGTGCAGTGTAACTGATTGGTGCGGTGAC
ATTAACAGCAGCAGCAGCAGCAGCTGTGCAGTACAGACATATAGGTGGAT
AAGCGTGAGGACCATGAGATTTGGTTTTCTCCGCCTTTTTCTGGCGCTTT
AGTTTGATGCAAAAATGCATGCGTCAGAAGTGTTAGAAGAAAGATAGTCA
TCGGCGAGTCACGTACGCATAGAGAGAGAAGTCAAGAACATCGGCAGTGA
AATACCACGCTTCCGGTGGGGGCAATGACATTCATTGCTCTCTTGCGAGC
GAGACAATTTGTCTCGGTAAAAGTCTCTTACGTACAGAAAAGAGAGCTGC
TCACGTGGCAGGACGGCAACCGTCTTCGAAGGAATTAAAAAAAAAACTGT
GCAGAGAG back to topCoding sequence (CDS) from alignment at chr17:405531..407788- >NO17G01310.1 ID=NO17G01310.1|Name=NO17G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr17:405531..407788- (Nannochloropsis oceanica) ATGTCCCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGC CGTCCGCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAA CAGCGCTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTG CCTCTGTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCC CAGCCTCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTC AGAGCACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAG CTAAAGTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGG TGGAGACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCA AGGGCAAACAACGCATCCTCCTCCCTCCAGGCCCTAATCAACTTTTAATT GCTTTCAGCATCATTATGGCCTTAGGTTTGGGAGCCTTAGGACAACTCGT AGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCTTTCACTCCAACCTT CCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTCTTTTTGCAGTCGAC GCTGTGCTTCAAGGATTGCAAGAAGACACAGCTAGCGAGGTTTATGCCCT CTCAATCTTCGGCACCAAGACCCCTGCCGGCCTTGTCCTCCTCCTCGCTG CTGCCGTCACATTGGCGACAGCCATTGGGGAAGAAGCGCTTTTTCGAGGA TTGATTCAACAGGGGATTGCTCAGGGTCCGAGGTAG back to top
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