NO17G01270, NO17G01270 (gene) Nannochloropsis oceanica

Overview
NameNO17G01270
Unique NameNO17G01270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2425
Alignment locationchr17:393825..396249 +

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Properties
Property NameValue
DescriptionUbiquitin specific peptidase 15
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:393825..396249 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR016197Chromodomain-like
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
[Close]
BLAST of NO17G01270 vs. NCBI_GenBank
Match: EWM24325.1 (ubiquitin specific peptidase 15 [Nannochloropsis gaditana])

HSP 1 Score: 412.5 bits (1059), Expect = 2.000e-111
Identity = 252/544 (46.32%), Postives = 308/544 (56.62%), Query Frame = 0 
Query:   70 PPIDPRPPIPQAPTALLTSMERRALGLSGLLLAAFVGDAAMFAKEVHRVSTL-------SVSCPSSSSSFASTAWGRLDAHGRSVLHAAASSGHPTILRQVLAAQVLDIDTETEGGLTALCYSLDRRDVAGATTLLTAGADPGKVEKIYGLWESEWASEKMGLFGTSREDALAILKLALCASVARRNEQAQPWLDGETQLSLYEEWKAKLKVGSRVDARDCDYRWYEAEVIGVFPGGVRVSYLSWGKRFDEDLGLDSLRVLPAYSVVPAWRESLGVGSQVEILAAAATAVVAPETG-----------------------------------QGGPEIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE---------GCCPLRPMS------EPVPATPRQIRAREAANARDLPTLLSFINVQDPAALRMTYYRRKLHLITAYSPEAPSRGVGCPLLTARREQGAPELNVHXXXXXXXXGYVKRAKIDRRGSTMSSRRGKSGHSSALTMGYAERREWVLSHVVTELNEDLFTDLLLDY 557
            P +D   P P  PTALLTSMERR++G+SGLL A+F G+AA F  E HR+  L       S +  SS+++F S+ W R DA GRS+LH AASSGHPTIL+ VL A+V DID   EGGLTALCY+LDRRD  GATTLL AGA+  KVE +YG W++ WA+E+MG+FGT R DAL IL+ AL  ++ + +++ +PWLD  TQ  L+EEWKA LKVGSRVDARDCDYRWYEAEV+G F  GVRVSYLSWG+RFDEDL LDSLRVLPAYSVVPAWRE+L VGS VEILA AA  + A  T                                     G P +                                    E         G      +S      EPV A+PRQ  A +AAN  DL  LL+ INVQDP ALR  Y+RRKL L        P+ G G  L   RR +G   L  H           K+  ++   +++     K   +S L   YAE R+ VL +VVT+L EDLF + L +Y
Sbjct:   75 PQVDTTSPRPLTPTALLTSMERRSIGISGLLRASFSGNAAEFEAEAHRLCALIPAKLLSSFTSLSSAAAF-SSEWTRADARGRSILHGAASSGHPTILQHVLDAKVFDIDQPAEGGLTALCYALDRRDFVGATTLLAAGANADKVESLYGFWDAAWATERMGMFGTPRADALDILRTALSQALVQNDDRCRPWLDLTTQHGLFEEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRETLSVGSHVEILATAAGPMAAGSTSAAATLPSPEDPQERKWWDATAVDIQRSRRRILLSVDGRPSVTRWVDMDGREIADIGTHVKPAPPPLLPPQTLAGSLLEVQDDATGDVGASSAASISHSRGGKEPVAASPRQEEASKAANDGDLARLLALINVQDPVALRFIYFRRKLQLGMISRLNPPALGPGSLLHNGRRRRGKLGLIFHQQVEKHHDKRPKKRHVET--ASLEFPSCKKRRTSKLL--YAELRKNVLRYVVTDLKEDLFKEFLQEY 613
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BLAST of NO17G01270 vs. NCBI_GenBank
Match: XP_009830325.1 (hypothetical protein H257_06708 [Aphanomyces astaci] >ETV80401.1 hypothetical protein H257_06708 [Aphanomyces astaci])

HSP 1 Score: 75.9 bits (185), Expect = 4.500e-10
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 0 
Query:  257 DGETQLSLYEE--WKAKLKVGSRVDARDCDYRWYEAEVIGVFPGGVRVSYLSWGKRFDEDLGLDSLRVLPAYSVVPAWRESLGVGSQVEILAAAATAV 353
            +GE  +S  E+  W+  L+VG  VDA+D    WYE+ VI V P  V+V YL+WG +++  L  DS ++   +S    WR +LG G+ VE   AA T +
Sbjct:  230 NGEYYMSEVEDLGWRPMLQVGDYVDAKDTGNNWYESVVIDVKPEKVKVHYLTWGDKWNVWLSRDSSKLERLHSRADEWRSTLGKGAPVEFSTAATTGI 327
[Close]
BLAST of NO17G01270 vs. NCBI_GenBank
Match: XP_009830326.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV80402.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 75.9 bits (185), Expect = 4.500e-10
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 0 
Query:  257 DGETQLSLYEE--WKAKLKVGSRVDARDCDYRWYEAEVIGVFPGGVRVSYLSWGKRFDEDLGLDSLRVLPAYSVVPAWRESLGVGSQVEILAAAATAV 353
            +GE  +S  E+  W+  L+VG  VDA+D    WYE+ VI V P  V+V YL+WG +++  L  DS ++   +S    WR +LG G+ VE   AA T +
Sbjct:  230 NGEYYMSEVEDLGWRPMLQVGDYVDAKDTGNNWYESVVIDVKPEKVKVHYLTWGDKWNVWLSRDSSKLERLHSRADEWRSTLGKGAPVEFSTAATTGI 327
[Close]
BLAST of NO17G01270 vs. NCBI_GenBank
Match: ETK77527.1 (hypothetical protein L915_16216 [Phytophthora parasitica] >ETL30983.1 hypothetical protein L916_16109 [Phytophthora parasitica])

HSP 1 Score: 72.4 bits (176), Expect = 5.000e-9
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0 
Query:  266 EEWKAKLKVGSRVDARDCDYRWYEAEVIGVFPGGVRVSYLSWGKRFDEDLGLDSLRVLPAYSVVPAWRE 335
            E+W+++LK+   VDA D D RWYEA+++ +    V+V Y  W  ++DE L   S R++P +S VP WR+
Sbjct:  140 EQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208
[Close]
BLAST of NO17G01270 vs. NCBI_GenBank
Match: ETL84242.1 (hypothetical protein L917_15908 [Phytophthora parasitica])

HSP 1 Score: 72.4 bits (176), Expect = 5.000e-9
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0 
Query:  266 EEWKAKLKVGSRVDARDCDYRWYEAEVIGVFPGGVRVSYLSWGKRFDEDLGLDSLRVLPAYSVVPAWRE 335
            E+W+++LK+   VDA D D RWYEA+++ +    V+V Y  W  ++DE L   S R++P +S VP WR+
Sbjct:  140 EQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208
[Close]
BLAST of NO17G01270 vs. NCBI_GenBank
Match: ETM37411.1 (hypothetical protein L914_16030, partial [Phytophthora parasitica])

HSP 1 Score: 72.4 bits (176), Expect = 5.000e-9
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0 
Query:  266 EEWKAKLKVGSRVDARDCDYRWYEAEVIGVFPGGVRVSYLSWGKRFDEDLGLDSLRVLPAYSVVPAWRE 335
            E+W+++LK+   VDA D D RWYEA+++ +    V+V Y  W  ++DE L   S R++P +S VP WR+
Sbjct:  156 EQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 224
[Close]
BLAST of NO17G01270 vs. NCBI_GenBank
Match: ETM37424.1 (hypothetical protein L914_16029 [Phytophthora parasitica])

HSP 1 Score: 72.4 bits (176), Expect = 5.000e-9
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0 
Query:  266 EEWKAKLKVGSRVDARDCDYRWYEAEVIGVFPGGVRVSYLSWGKRFDEDLGLDSLRVLPAYSVVPAWRE 335
            E+W+++LK+   VDA D D RWYEA+++ +    V+V Y  W  ++DE L   S R++P +S VP WR+
Sbjct:  140 EQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208
[Close]
BLAST of NO17G01270 vs. NCBI_GenBank
Match: XP_008915695.1 (hypothetical protein PPTG_19039 [Phytophthora parasitica INRA-310] >ETM99025.1 hypothetical protein PPTG_19039 [Phytophthora parasitica INRA-310] >ETP07167.1 hypothetical protein F441_16520 [Phytophthora parasitica CJ01A1] >KUG01740.1 hypothetical protein AM587_10011869 [Phytophthora nicotianae])

HSP 1 Score: 72.4 bits (176), Expect = 5.000e-9
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0 
Query:  266 EEWKAKLKVGSRVDARDCDYRWYEAEVIGVFPGGVRVSYLSWGKRFDEDLGLDSLRVLPAYSVVPAWRE 335
            E+W+++LK+   VDA D D RWYEA+++ +    V+V Y  W  ++DE L   S R++P +S VP WR+
Sbjct:  140 EQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208
[Close]
BLAST of NO17G01270 vs. NCBI_GenBank
Match: ETO66061.1 (hypothetical protein F444_16689 [Phytophthora parasitica P1976])

HSP 1 Score: 72.4 bits (176), Expect = 5.000e-9
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0 
Query:  266 EEWKAKLKVGSRVDARDCDYRWYEAEVIGVFPGGVRVSYLSWGKRFDEDLGLDSLRVLPAYSVVPAWRE 335
            E+W+++LK+   VDA D D RWYEA+++ +    V+V Y  W  ++DE L   S R++P +S VP WR+
Sbjct:  140 EQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208
[Close]
BLAST of NO17G01270 vs. NCBI_GenBank
Match: ETP53088.1 (hypothetical protein F442_01991 [Phytophthora parasitica P10297])

HSP 1 Score: 72.4 bits (176), Expect = 5.000e-9
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0 
Query:  266 EEWKAKLKVGSRVDARDCDYRWYEAEVIGVFPGGVRVSYLSWGKRFDEDLGLDSLRVLPAYSVVPAWRE 335
            E+W+++LK+   VDA D D RWYEA+++ +    V+V Y  W  ++DE L   S R++P +S VP WR+
Sbjct:  140 EQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208
The following BLAST results are available for this feature:
BLAST of NO17G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 18
Match NameE-valueIdentityDescription
EWM24325.12.000e-11146.32ubiquitin specific peptidase 15 [Nannochloropsis g... [more]
XP_009830325.14.500e-1039.80hypothetical protein H257_06708 [Aphanomyces astac... [more]
XP_009830326.14.500e-1039.80hypothetical protein, variant [Aphanomyces astaci]... [more]
ETK77527.15.000e-942.03hypothetical protein L915_16216 [Phytophthora para... [more]
ETL84242.15.000e-942.03hypothetical protein L917_15908 [Phytophthora para... [more]
ETM37411.15.000e-942.03hypothetical protein L914_16030, partial [Phytopht... [more]
ETM37424.15.000e-942.03hypothetical protein L914_16029 [Phytophthora para... [more]
XP_008915695.15.000e-942.03hypothetical protein PPTG_19039 [Phytophthora para... [more]
ETO66061.15.000e-942.03hypothetical protein F444_16689 [Phytophthora para... [more]
ETP53088.15.000e-942.03hypothetical protein F442_01991 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL157nonsL157Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR036ncniR036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR030ngnoR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002895NSK002895Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01270.1NO17G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632488gene_7764Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100047g28gene6169Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01270.1NO17G01270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01270 ID=NO17G01270|Name=NO17G01270|organism=Nannochloropsis oceanica|type=gene|length=2425bp
TTGGCACTCTCAATATTGCTGGAAACTACGTAGTGGCGGAGGTCTCGGCA
AGGCGGGGGCTTAAAAAAGAAGGAGGGCTGGCAACAACCGACAGCCAAAA
CACGATGCAACGGCTTGCTTCTTGCTGTCTTGACAGACCTCCACTTCATC
CTTCTTTTGAACGCTTTGGCAAGCCCTTGAGGCTTCCCGCGCTCACATAC
ACATTCGCTACACATCATCCCTTCCGCCCTTTACCTAGGTTACGCCCGTT
GCGCGCTTCTCCTGCGCTTTCCACGCCTCGGCTGAGAGTCAATTTCGGAG
GGCTCGATTTTGTGTGCCCGGCGTCTCATCCTCCGACCGGAACACAATGC
CACCAAACCCTTGAATTATCGGCACTTTTACTGAACCCCGCATCCGAACC
ACCACACAAACAAATCAGGCACAAATCTTACTAGATCATGAGTGCCGCGT
CATCTTCCCTTGCCAAGCGCAAGCGGGGTGTCGAGGGCAGCGAGCCGCCT
CAACCTCGCCATCCCCCTCCACGACGCCAGAGCCGCCGAAACGAGGCCAA
CAACAGCAACAATGTGCCGTCTACGGCCGCATCTTTGGAGAGGATCCTCC
CCTCAACAAGCAGTACCAATGCCCTTGAGTCGCCCGCGTTGCTTCCGCCC
ATCGACCCCCGTCCTCCCATCCCCCAGGCTCCTACAGCCCTTCTTACTTC
CATGGAGCGCCGCGCCTTGGGACTGTCAGGGTTGCTCCTTGCTGCCTTTG
TCGGCGACGCCGCCATGTTCGCCAAGGAAGTACATCGCGTATCGACCTTG
TCGGTGTCCTGTCCGTCCTCTTCCTCTTCCTTCGCGTCCACCGCCTGGGG
CCGTCTAGACGCCCACGGTCGTTCCGTCCTCCATGCCGCCGCCTCCTCAG
GGCATCCGACAATTCTTCGACAAGTCCTTGCGGCCCAAGTTCTCGATATT
GATACAGAGACCGAAGGTGGATTGACGGCATTGTGCTATTCCTTGGACCG
ACGCGACGTGGCTGGCGCCACCACCTTGCTTACCGCTGGGGCTGACCCCG
GAAAAGTCGAAAAGATTTACGGATTGTGGGAGAGCGAGTGGGCAAGTGAG
AAGATGGGCTTATTTGGAACATCACGAGAGGATGCTTTAGCCATTTTAAA
GCTTGCTTTGTGTGCATCGGTGGCACGGAGAAATGAACAGGCTCAGCCGT
GGTTGGATGGAGAGACGCAGCTCTCGCTGTATGAGGAATGGAAAGCAAAG
CTGAAAGTGGGGAGTAGGGTCGATGCGCGGGATTGTGATTATCGATGGTA
TGAAGCGGAGGTAATTGGAGTGTTCCCTGGAGGGGTACGTGTGAGTTATC
TAAGTTGGGGAAAGAGGTTTGATGAGGACCTGGGCTTGGATAGCTTGAGG
GTGTTACCTGCATACTCGGTAGTGCCGGCGTGGAGGGAGAGCCTGGGGGT
GGGGAGCCAGGTAGAAATTTTGGCGGCGGCGGCAACAGCAGTGGTGGCGC
CCGAGACGGGCCAAGGAGGGCCGGAGATTGCTGGTGAGGAAGGGGGTGGG
GTAGGAGGAGGGGAGGGTGGGGGAGGAGGAGGAGGAGAGGGTGGGGGAGG
AGGAGGAGGAGGAGGAGGGGGGGAGGGGGAGGGGGAGGAGGGTTGCTGTC
CTCTCCGCCCCATGTCCGgtgggaggagatggaaaggaagtggtgggatg
ccacggctctagatattgatcgacgacggcgcagaatcctcttaagtgtg
gatggtcgccctagcttgtctcgctgggtggagatcgatgggagggaaat
tgctgatatatctactcacgtcaagcccatcactggcggtaccctcgctc
ctccccctcctccccctcttctgccccctcctcccctgtcgcacccactc
ctcgctggtgttggtgctgcgattgatcctgctgctggtgttgctggtgg
cggtgtgctcgtccctctccgggggggcaaagAGCCCGTCCCTGCCACAC
CCCGTCAGATCCGAGCACGCGAAGCAGCCAATGCCAGAGACCTACCTACG
CTCCTCTCCTTCATCAACGTACAAGATCCTGCCGCTCTTCGGATGACTTA
CTACCGCCGCAAGCTTCATTTAATCACGGCATACAGCCCCGAAGCTCCTT
CTCGTGGCGTAGGTTGCCCCCTGCTGACAGCACGTCGAGAGCAGGGTGCG
CCGGAGCTCAACGTGCACCACCACAACCACCACCACAAGCGAGGATATGT
AAAAAGGGCGAAGATTGATCGTCGTGGCAGCACTATGAGTAGCAGGCGCG
GTAAGAGTGGCCATAGTAGTGCGTTGACTATGGGCTACGCGGAAAGGCGG
GAGTGGGTGTTGAGCCATGTGGTGACTGAGTTGAATGAAGATTTGTTTAC
GGACCTCTTGTTGGACTATTGGTGA
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protein sequence of NO17G01270.1

>NO17G01270.1-protein ID=NO17G01270.1-protein|Name=NO17G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MSAASSSLAKRKRGVEGSEPPQPRHPPPRRQSRRNEANNSNNVPSTAASL
ERILPSTSSTNALESPALLPPIDPRPPIPQAPTALLTSMERRALGLSGLL
LAAFVGDAAMFAKEVHRVSTLSVSCPSSSSSFASTAWGRLDAHGRSVLHA
AASSGHPTILRQVLAAQVLDIDTETEGGLTALCYSLDRRDVAGATTLLTA
GADPGKVEKIYGLWESEWASEKMGLFGTSREDALAILKLALCASVARRNE
QAQPWLDGETQLSLYEEWKAKLKVGSRVDARDCDYRWYEAEVIGVFPGGV
RVSYLSWGKRFDEDLGLDSLRVLPAYSVVPAWRESLGVGSQVEILAAAAT
AVVAPETGQGGPEIAGEEGGGVGGGEGGGGGGGEGGGGGGGGGGGEGEGE
EGCCPLRPMSEPVPATPRQIRAREAANARDLPTLLSFINVQDPAALRMTY
YRRKLHLITAYSPEAPSRGVGCPLLTARREQGAPELNVHHHNHHHKRGYV
KRAKIDRRGSTMSSRRGKSGHSSALTMGYAERREWVLSHVVTELNEDLFT
DLLLDYW*
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Synonyms
Publications