NO17G01140.1, NO17G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01140.1
Unique NameNO17G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length795
Alignment locationchr17:358309..359660 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:358309..359660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO17G01140.1 vs.
Match: EWM24253.1 (hypothetical protein Naga_100020g81 [Nannochloropsis gaditana])

HSP 1 Score: 110.9 bits (276), Expect = 6.000e-21
Identity = 72/199 (36.18%), Postives = 105/199 (52.76%), Query Frame = 0
Query:   13 SSLVICVCLLTCSSPASAFKPQPLRTPSTAAAAHGRPQTTHTRAESVDIREPVSQPWRVSTARYPLIGWPSWGPKLHEAVIV----------ERRDANAAAAGPAYLLFDFIPVSATKISTVTTLFRGQTVPGMIREKVLTFAPPTLAFQGDSRRSLDEIRAFCANTDSD-NLVVEISHSYGVGYDSRTLLRFVKLDDL 201
            + + +  C  T    ASAF        ST  A H            V++++ V     VS ARYPLIGWP W PKLH AV+V          +R  +   AA   ++LFDFIP + T + T  +L  G+ VPG+IREK +  AP +LAFQG  RR LD+IR FC+  D++ +L+    H++     ++ ++ F+  DD+
Sbjct:   18 TGISVTTCQHTQGRCASAFLRPSQSASSTRKAFH-----------DVEVKD-VPLINYVSVARYPLIGWPKWAPKLHTAVVVSTMTTSDDVPKRPQSICVAASSQHILFDFIPAAPTDVRTARSLLWGERVPGIIREKAINSAPQSLAFQGICRRRLDDIRDFCSTYDAELHLLDNNCHTF-----TQKMVSFLLADDI 199          
The following BLAST results are available for this feature:
BLAST of NO17G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24253.16.000e-2136.18hypothetical protein Naga_100020g81 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01140NO17G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01140.1NO17G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01140.1.cds1NO17G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01140.1.cds2NO17G01140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01140.1.cds3NO17G01140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01140.1 ID=NO17G01140.1|Name=NO17G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=795bp
ATGCGAAAAGTAAGACCGAGGCCACTTCCATCTCGTAGTAGCCTTGTCAT
TTGCGTGTGTTTGCTAACATGCAGCAGCCCCGCCTCTGCCTTCAAGCCCC
AGCCTCTGCGCACCCCGTCGACGGCAGCAGCAGCACACGGACGACCACAA
ACAACACATACTCGCGCTGAAAGCGTAGATATTCGAGAGCCGGTTTCACA
GCCCTGGCGCGTCAGTACGGCACGCTACCCGCTGATTGGTTGGCCGAGCT
GGGGTCCCAAGCTGCACGAAGCCGTCATCGTGGAACGCCGAGACGCGAAT
GCTGCCGCGGCGGGGCCAGCCTACCTGCTTTTTGACTTCATTCCCGTTTC
TGCTACAAAGATCTCAACAGTCACAACCTTATTCCGGGGGCAGACAGTAC
CTGGCATGATTCGTGAAAAGGTACTGACGTTCGCACCACCTACACTCGCT
TTCCAAGGGGACAGTCGCCGGAGCTTGGATGAGATCCGAGCATTTTGTGC
CAATACTGATTCAGATAATTTGGTCGTGGAGATCTCTCATAGCTATGGCG
TGGGTTATGATTCTCGCACCCTATTGAGATTCGTTAAATTGGACGATTTA
CAAAGAACCATGAAATGCATACTAAATATTTATGGGTGGAATTTCAATCC
AGCAACCATTTTATCCAGGGATGAACGCCTGGACCCGATTGCGATGTCCA
CGTTTCTCCACCGTCAATCGACGTATGGACATTTCCGTCGTGGACGACTG
CGACTGCGATTTCCTCGTCATTGGAAGAGTCCACGCTTATCCTAG
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protein sequence of NO17G01140.1

>NO17G01140.1-protein ID=NO17G01140.1-protein|Name=NO17G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MRKVRPRPLPSRSSLVICVCLLTCSSPASAFKPQPLRTPSTAAAAHGRPQ
TTHTRAESVDIREPVSQPWRVSTARYPLIGWPSWGPKLHEAVIVERRDAN
AAAAGPAYLLFDFIPVSATKISTVTTLFRGQTVPGMIREKVLTFAPPTLA
FQGDSRRSLDEIRAFCANTDSDNLVVEISHSYGVGYDSRTLLRFVKLDDL
QRTMKCILNIYGWNFNPATILSRDERLDPIAMSTFLHRQSTYGHFRRGRL
RLRFPRHWKSPRLS*
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mRNA from alignment at chr17:358309..359660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01140.1 ID=NO17G01140.1|Name=NO17G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp|location=Sequence derived from alignment at chr17:358309..359660+ (Nannochloropsis oceanica)
ATGCGAAAAGTAAGACCGAGGCCACTTCCATCTCGTAGTAGCCTTGTCAT TTGCGTGTGTTTGCTAACATGCAGCAGCCCCGCCTCTGCCTTCAAGCCCC AGCCTCTGCGCACCCCGTCGACGGCAGCAGCAGCACACGGACGACCACAA ACAACACATACTCGCGCTGAAAGCGTAGATATTCGAGAGCCGGTTTCACA GCCCTGGCGCGTCAGTACGGCACGCTACCCGCTGATTGGTTGGCCGAGCT GGGGTCCCAAGCTGCACGAAGCCGTCATCGTGGAACGCCGAGACGCGAAT GCTGCCGCGGCGGGGCCAGCCTACCTGCTTTTTGACTTCATTCCCGTTTC TGCTACAAAGATCTCAACAGTCACAACCTTATTCCGGGGGCAGACAGTAC CTGGCATGATTCGTGAAAAGGTGAGTGAGCGCATGCTGCTAGTGCTAGAA AAGGGCACCATGCAAACGCCTACATATGAGGGCTGGTGCTGGAGCACTGA AGGAGGGCATGTCTTCAGTATGGAATGGCCATTTCAGAGAAAGGTTGTGA CGTCTTCTCACTCAATCTCTTCCCTTACGACAAACAGGTACTGACGTTCG CACCACCTACACTCGCTTTCCAAGGGGACAGTCGCCGGAGCTTGGATGAG ATCCGAGCATTTTGTGCCAAGTACGATGAGTATCTTCATTTGATGAATAA TAATTGCTATACGTTCTCGGATCGCCTGCAAAGATTTCTTATACGAGACG ACGATAGATGGGCATGCGCATCGGAAAACATCCGGGCTAGCGCTGTGTCC CAAAGTCTCGACGTAAATGGCAATGTTGTGGTGTCTGGTAATGAAAATAC ATTTGGTCTAATGAAGACCACAAGCTCCGACGTGACTGTTCTATCCAGGA TCAATAAATCCAGGGGTGTATGTGAGATCGTTAGTACAGGATATCACGCG AAGTTGATCCTTTTGGGAACCACAGAAACGAAAAAATATTCATTCCCCGT TACGAACAGCATCAAGGATTCTTTTATGAGATTCTAACGTCTTCTCCCAT CATCATCTAGTACTGATTCAGATAATTTGGTCGTGGAGATCTCTCATAGC TATGGCGTGGGTTATGATTCTCGCACCCTATTGAGATTCGTTAAATTGGA CGATTTACAAAGAACCATGAAATGCATACTAAATATTTATGGGTGGAATT TCAATCCAGCAACCATTTTATCCAGGGATGAACGCCTGGACCCGATTGCG ATGTCCACGTTTCTCCACCGTCAATCGACGTATGGACATTTCCGTCGTGG ACGACTGCGACTGCGATTTCCTCGTCATTGGAAGAGTCCACGCTTATCCT AG
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Coding sequence (CDS) from alignment at chr17:358309..359660+

>NO17G01140.1 ID=NO17G01140.1|Name=NO17G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr17:358309..359660+ (Nannochloropsis oceanica)
ATGCGAAAAGTAAGACCGAGGCCACTTCCATCTCGTAGTAGCCTTGTCAT
TTGCGTGTGTTTGCTAACATGCAGCAGCCCCGCCTCTGCCTTCAAGCCCC
AGCCTCTGCGCACCCCGTCGACGGCAGCAGCAGCACACGGACGACCACAA
ACAACACATACTCGCGCTGAAAGCGTAGATATTCGAGAGCCGGTTTCACA
GCCCTGGCGCGTCAGTACGGCACGCTACCCGCTGATTGGTTGGCCGAGCT
GGGGTCCCAAGCTGCACGAAGCCGTCATCGTGGAACGCCGAGACGCGAAT
GCTGCCGCGGCGGGGCCAGCCTACCTGCTTTTTGACTTCATTCCCGTTTC
TGCTACAAAGATCTCAACAGTCACAACCTTATTCCGGGGGCAGACAGTAC
CTGGCATGATTCGTGAAAAGGTACTGACGTTCGCACCACCTACACTCGCT
TTCCAAGGGGACAGTCGCCGGAGCTTGGATGAGATCCGAGCATTTTGTGC
CAATACTGATTCAGATAATTTGGTCGTGGAGATCTCTCATAGCTATGGCG
TGGGTTATGATTCTCGCACCCTATTGAGATTCGTTAAATTGGACGATTTA
CAAAGAACCATGAAATGCATACTAAATATTTATGGGTGGAATTTCAATCC
AGCAACCATTTTATCCAGGGATGAACGCCTGGACCCGATTGCGATGTCCA
CGTTTCTCCACCGTCAATCGACGTATGGACATTTCCGTCGTGGACGACTG
CGACTGCGATTTCCTCGTCATTGGAAGAGTCCACGCTTATCCTAG
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Synonyms
Publications