NO17G01140, NO17G01140 (gene) Nannochloropsis oceanica

Overview
NameNO17G01140
Unique NameNO17G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1352
Alignment locationchr17:358309..359660 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:358309..359660 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO17G01140 vs. NCBI_GenBank
Match: EWM24253.1 (hypothetical protein Naga_100020g81 [Nannochloropsis gaditana])

HSP 1 Score: 110.9 bits (276), Expect = 6.000e-21
Identity = 72/199 (36.18%), Postives = 105/199 (52.76%), Query Frame = 0 
Query:   13 SSLVICVCLLTCSSPASAFKPQPLRTPSTAAAAHGRPQTTHTRAESVDIREPVSQPWRVSTARYPLIGWPSWGPKLHEAVIV----------ERRDANAAAAGPAYLLFDFIPVSATKISTVTTLFRGQTVPGMIREKVLTFAPPTLAFQGDSRRSLDEIRAFCANTDSD-NLVVEISHSYGVGYDSRTLLRFVKLDDL 201
            + + +  C  T    ASAF        ST  A H            V++++ V     VS ARYPLIGWP W PKLH AV+V          +R  +   AA   ++LFDFIP + T + T  +L  G+ VPG+IREK +  AP +LAFQG  RR LD+IR FC+  D++ +L+    H++     ++ ++ F+  DD+
Sbjct:   18 TGISVTTCQHTQGRCASAFLRPSQSASSTRKAFH-----------DVEVKD-VPLINYVSVARYPLIGWPKWAPKLHTAVVVSTMTTSDDVPKRPQSICVAASSQHILFDFIPAAPTDVRTARSLLWGERVPGIIREKAINSAPQSLAFQGICRRRLDDIRDFCSTYDAELHLLDNNCHTF-----TQKMVSFLLADDI 199
The following BLAST results are available for this feature:
BLAST of NO17G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24253.16.000e-2136.18hypothetical protein Naga_100020g81 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL157nonsL157Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR036ncniR036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR030ngnoR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002911NSK002911Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01140.1NO17G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100020g81gene6185Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01140.1NO17G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01140 ID=NO17G01140|Name=NO17G01140|organism=Nannochloropsis oceanica|type=gene|length=1352bp
ATGCGAAAAGTAAGACCGAGGCCACTTCCATCTCGTAGTAGCCTTGTCAT
TTGCGTGTGTTTGCTAACATGCAGCAGCCCCGCCTCTGCCTTCAAGCCCC
AGCCTCTGCGCACCCCGTCGACGGCAGCAGCAGCACACGGACGACCACAA
ACAACACATACTCGCGCTGAAAGCGTAGATATTCGAGAGCCGGTTTCACA
GCCCTGGCGCGTCAGTACGGCACGCTACCCGCTGATTGGTTGGCCGAGCT
GGGGTCCCAAGCTGCACGAAGCCGTCATCGTGGAACGCCGAGACGCGAAT
GCTGCCGCGGCGGGGCCAGCCTACCTGCTTTTTGACTTCATTCCCGTTTC
TGCTACAAAGATCTCAACAGTCACAACCTTATTCCGGGGGCAGACAGTAC
CTGGCATGATTCGTGAAAAGgtgagtgagcgcatgctgctagtgctagaa
aagggcaccatgcaaacgcctacatatgagggctggtgctggagcactga
aggagggcatgtcttcagtatggaatggccatttcagagaaaggttgtga
cgtcttctcactcaatctcttcccttacgacaaacagGTACTGACGTTCG
CACCACCTACACTCGCTTTCCAAGGGGACAGTCGCCGGAGCTTGGATGAG
ATCCGAGCATTTTGTGCCAAgtacgatgagtatcttcatttgatgaataa
taattgctatacgttctcggatcgcctgcaaagatttcttatacgagacg
acgatagatgggcatgcgcatcggaaaacatccgggctagcgctgtgtcc
caaagtctcgacgtaaatggcaatgttgtggtgtctggtaatgaaaatac
atttggtctaatgaagaccacaagctccgacgtgactgttctatccagga
tcaataaatccaggggtgtatgtgagatcgttagtacaggatatcacgcg
aagttgatccttttgggaaccacagaaacgaaaaaatattcattccccgt
tacgaacagcatcaaggattcttttatgagattctaacgtcttctcccat
catcatctagTACTGATTCAGATAATTTGGTCGTGGAGATCTCTCATAGC
TATGGCGTGGGTTATGATTCTCGCACCCTATTGAGATTCGTTAAATTGGA
CGATTTACAAAGAACCATGAAATGCATACTAAATATTTATGGGTGGAATT
TCAATCCAGCAACCATTTTATCCAGGGATGAACGCCTGGACCCGATTGCG
ATGTCCACGTTTCTCCACCGTCAATCGACGTATGGACATTTCCGTCGTGG
ACGACTGCGACTGCGATTTCCTCGTCATTGGAAGAGTCCACGCTTATCCT
AG
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protein sequence of NO17G01140.1

>NO17G01140.1-protein ID=NO17G01140.1-protein|Name=NO17G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MRKVRPRPLPSRSSLVICVCLLTCSSPASAFKPQPLRTPSTAAAAHGRPQ
TTHTRAESVDIREPVSQPWRVSTARYPLIGWPSWGPKLHEAVIVERRDAN
AAAAGPAYLLFDFIPVSATKISTVTTLFRGQTVPGMIREKVLTFAPPTLA
FQGDSRRSLDEIRAFCANTDSDNLVVEISHSYGVGYDSRTLLRFVKLDDL
QRTMKCILNIYGWNFNPATILSRDERLDPIAMSTFLHRQSTYGHFRRGRL
RLRFPRHWKSPRLS*
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Synonyms
Publications