NO17G00870.1, NO17G00870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00870.1
Unique NameNO17G00870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2073
Alignment locationchr17:285081..287375 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:285081..287375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00870.1 vs.
Match: EWM21126.1 (elongation factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 781.2 bits (2016), Expect = 1.700e-222
Identity = 390/437 (89.24%), Postives = 409/437 (93.59%), Query Frame = 0 
Query:    1 MALKLYTNPGNFRAFKILVAALYNGVDIEVVDLDLAAKKSSDILAKSPAGKVPVLETPQGLLFESNAIARYIARARRDTDLYGVSFFDSGLVDSWIDFAAHEVELPATLWVYPVFGYLPHNAAVTEKAKADLGAALETLDAHLADKTYLVGDKVTLADITVASALVYPYKIVMSPEYRSQYPHVLRWFLTIVNQPQFKNVTGDVVLAAKELMPSGAPPALAIPAKGA-KKEKKDKAPKAAAPKQEKKKEAAPPAAKSGEDLEEQLAKESKKAASEHPLKIMDRDAPSEFVMDTWKKTYSNARSYDAAMDEFWKVFDSTGYSLWFCEYQYNSELQKLFMTCNLVSGFVQRTDELRKWAFGCMWITGEDAPGKQVVSGCWLMRGQSDEYIKNANPDAEFYTWTKVATPVSDADKKKVQEYWCSDESLAGLPVLDCKVFK 437
            MALKLYTNPGNFRAFKILVAALYNGVDI+VVDLDLAAKK +D+LAKSPAGKVPVLETPQGLLFESNAIARYIARARRDTDLYGVSFFDSGLVD+WIDFAA EVELPATLWVYPVFGYLPHNAAVTEKAKADLGAA+E LD HLADKTYLVG+KVTLADITVASALVYPYKIVMSPEYR+QYPHVLRWFLTIVNQP F+ V GDVVLA KEL+PSGAPPALA+PAKGA KKEKK+K  KAAAPKQEKKKE AP  AK+GEDLEEQLAKE KK A+EHPLKI+DR++PSEFVMDTWKKTYSNARSYD AMDEFWKVFDS GYSLWFC YQYNSEL KLFMTCNLVSGFVQRTDELRKWAFGCMWI GEDAPGK  + G WLMRGQSD YIK+ANPDAEFYTWTKV TPVSD DKKKVQEYWCSD+SLAGLPVLDCKVFK
Sbjct:    1 MALKLYTNPGNFRAFKILVAALYNGVDIDVVDLDLAAKKRTDVLAKSPAGKVPVLETPQGLLFESNAIARYIARARRDTDLYGVSFFDSGLVDAWIDFAAQEVELPATLWVYPVFGYLPHNAAVTEKAKADLGAAMEILDNHLADKTYLVGEKVTLADITVASALVYPYKIVMSPEYRAQYPHVLRWFLTIVNQPHFRAVIGDVVLAEKELVPSGAPPALALPAKGAGKKEKKEKKEKAAAPKQEKKKEEAP--AKTGEDLEEQLAKEEKKKAAEHPLKILDRESPSEFVMDTWKKTYSNARSYDQAMDEFWKVFDSLGYSLWFCNYQYNSELTKLFMTCNLVSGFVQRTDELRKWAFGCMWILGEDAPGKMEIRGLWLMRGQSDSYIKSANPDAEFYTWTKVPTPVSDEDKKKVQEYWCSDDSLAGLPVLDCKVFK 435
The following BLAST results are available for this feature:
BLAST of NO17G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21126.11.700e-22289.24elongation factor 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00870NO17G00870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00870.1NO17G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00870.1.cds1NO17G00870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00870.1.cds2NO17G00870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00870.1 ID=NO17G00870.1|Name=NO17G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2073bp
ACTAACTGCACCTAGAGACATGACAGTGTCACCCAACGGGAAGCTTACCC
AGGGATGGGCCATCATAAGGGCGATTCCTTGATGCCTCGCGCCGTCTCGC
TGACAAACTTGTCTCCGCCACACACAATGCAGTCTGGGTGGATCTGGCTG
GTTCCACGGAATCTCATGCCCTTGTTGTTCTCATTCCCTGCTTTTGGATG
CTTGGGACTGCAGGCAAGGTGCGTAATGCTGGATTCGTCGACCTCCTGAC
CCCTCACCAAACGAGTGGCTTGGAAGTCTTTCTCTTCTTCTTCGCCCTCG
TCTGATCATGCTGATGCACGCGGCACGCTCGCATACCCCAAAAAAGCGCT
GTTTGCCCTTCTCCCACATACCACACACCACCGTCCCGCAACACAGAGAC
GCGTCTTCTTTGCTCCGGCAACCGACAATCCCAATATCAGCACCACCATG
GCTCTGAAACTCTACACCAACCCCGGCAACTTTCGGGCCTTTAAAATCCT
GGTTGCTGCCCTGTATAACGGCGTGGATATTGAGGTTGTGGACCTTGATC
TGGCGGCGAAGAAGAGCTCGGACATCCTGGCCAAGTCTCCGGCGGGCAAG
GTTCCCGTGCTCGAGACACCCCAGGGTCTTCTGTTTGAGAGCAATGCCAT
CGCGCGCTACATTGCCCGTGCCCGCCGTGATACCGACCTGTATGGTGTGT
CGTTTTTTGATTCTGGCCTGGTAGATTCCTGGATTGATTTTGCGGCGCAC
GAGGTCGAGCTCCCGGCGACGCTGTGGGTGTACCCGGTGTTCGGGTACCT
CCCTCACAACGCCGCCGTGACCGAGAAGGCCAAAGCTGACTTGGGCGCAG
CTTTGGAGACGCTCGATGCCCACTTGGCGGACAAGACATATCTGGTGGGG
GATAAAGTCACCCTGGCCGACATCACAGTTGCCTCTGCGTTGGTCTACCC
CTACAAGATCGTCATGAGCCCCGAGTACCGTTCTCAGTACCCGCACGTCC
TCCGCTGGTTCCTCACCATCGTGAACCAGCCTCAGTTCAAGAATGTGACC
GGCGACGTCGTTCTGGCCGCGAAGGAGCTGATGCCTTCTGGTGCTCCTCC
CGCTCTTGCCATCCCCGCGAAGGGTGCCAAGAAGGAGAAGAAGGACAAGG
CCCCCAAGGCGGCTGCTCCCAAGCAAGAGAAGAAGAAGGAGGCGGCGCCT
CCAGCGGCAAAGTCCGGGGAGGACTTGGAGGAACAGCTGGCAAAAGAATC
GAAGAAGGCCGCCTCGGAGCACCCGCTAAAGATAATGGATAGGGACGCGC
CATCGGAGTTTGTGATGGACACATGGAAGAAGACGTATTCCAATGCGCGT
TCTTACGATGCGGCAATGGATGAGTTCTGGAAGGTATTTGATAGCACGGG
CTACTCGCTTTGGTTCTGTGAGTACCAGTACAACAGTGAGCTCCAGAAGC
TTTTCATGACGTGCAATCTCGTGAGCGGCTTTGTCCAGCGAACGGACGAG
TTGCGGAAGTGGGCTTTTGGGTGCATGTGGATCACAGGGGAGGATGCACC
AGGGAAACAGGTGGTGAGTGGGTGCTGGTTGATGAGGGGACAGAGCGACG
AGTACATCAAGAATGCCAACCCGGACGCGGAATTCTACACGTGGACCAAA
GTGGCCACGCCCGTGTCGGACGCAGACAAGAAGAAGGTGCAGGAGTACTG
GTGCAGTGATGAAAGCTTGGCAGGGCTCCCCGTGTTGGATTGCAAGGTGT
TCAAGTAAGCAACGTCAAAGTGCATGTCCCAAGGGGGTTGGAAGGGAGGG
AGGGAGGGAGAGGGTTGCAGAGGGTTGGTTGTAGGGCGGAAAAGGAGATG
GTGAACTCGGTGTTTTGGTGGTGGGAAGAGAAGGGACAAGCATGCATGTT
GATGCTGGCGTTTTTGGTATTTCTCATCGTCGCCGTCTGTCGTCGGACAT
ATCTCTCGAGGACAAGGAAGGGAAGAAAGAATAAGACGGAATACGATTGG
GCGTGAGTCTGGAAAGGGGATGCGGTTTTACATGTTCTTTGTTAATTTTA
GGATTGATTGCATTGTTTACTCA
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protein sequence of NO17G00870.1

>NO17G00870.1-protein ID=NO17G00870.1-protein|Name=NO17G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MALKLYTNPGNFRAFKILVAALYNGVDIEVVDLDLAAKKSSDILAKSPAG
KVPVLETPQGLLFESNAIARYIARARRDTDLYGVSFFDSGLVDSWIDFAA
HEVELPATLWVYPVFGYLPHNAAVTEKAKADLGAALETLDAHLADKTYLV
GDKVTLADITVASALVYPYKIVMSPEYRSQYPHVLRWFLTIVNQPQFKNV
TGDVVLAAKELMPSGAPPALAIPAKGAKKEKKDKAPKAAAPKQEKKKEAA
PPAAKSGEDLEEQLAKESKKAASEHPLKIMDRDAPSEFVMDTWKKTYSNA
RSYDAAMDEFWKVFDSTGYSLWFCEYQYNSELQKLFMTCNLVSGFVQRTD
ELRKWAFGCMWITGEDAPGKQVVSGCWLMRGQSDEYIKNANPDAEFYTWT
KVATPVSDADKKKVQEYWCSDESLAGLPVLDCKVFK*
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mRNA from alignment at chr17:285081..287375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00870.1 ID=NO17G00870.1|Name=NO17G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2295bp|location=Sequence derived from alignment at chr17:285081..287375+ (Nannochloropsis oceanica)
ACTAACTGCACCTAGAGACATGACAGTGTCACCCAACGGGAAGCTTACCC
AGGGATGGGCCATCATAAGGGCGATTCCTTGATGCCTCGCGCCGTCTCGC
TGACAAACTTGTCTCCGCCACACACAATGCAGTCTGGGTGGATCTGGCTG
GTTCCACGGAATCTCATGCCCTTGTTGTTCTCATTCCCTGCTTTTGGATG
CTTGGGACTGCAGGCAAGGTGCGTAATGCTGGATTCGTCGACCTCCTGAC
CCCTCACCAAACGAGTGGCTTGGAAGTCTTTCTCTTCTTCTTCGCCCTCG
TCTGATCATGCTGATGCACGCGGCACGCTCGCATACCCCAAAAAAGCGCT
GTTTGCCCTTCTCCCACATACCACACACCACCGTCCCGCAACACAGAGAC
GCGTCTTCTTTGCTCCGGCAACCGACAATCCCAATATCAGCACCACCATG
GCTCTGGTAAGTACGAATGGTCTGGGAAAGGAATCAACGATGGAGGGAGG
ACGTGCACTGCACCCCTCGTCATTTCATTGAGCGCAACGAACACAGCTAG
TGTTTTCAAAGCAGTCCCAGTCTCGCTCTATGTAGACGGGCGCAACAACA
GAATCCGCGTGTCGTGCTTTGCTCAGAAACGCCAGCACTCACCCTCCCTC
CGTCCACAACCCTCTCGTCCTCTCACAGAAACTCTACACCAACCCCGGCA
ACTTTCGGGCCTTTAAAATCCTGGTTGCTGCCCTGTATAACGGCGTGGAT
ATTGAGGTTGTGGACCTTGATCTGGCGGCGAAGAAGAGCTCGGACATCCT
GGCCAAGTCTCCGGCGGGCAAGGTTCCCGTGCTCGAGACACCCCAGGGTC
TTCTGTTTGAGAGCAATGCCATCGCGCGCTACATTGCCCGTGCCCGCCGT
GATACCGACCTGTATGGTGTGTCGTTTTTTGATTCTGGCCTGGTAGATTC
CTGGATTGATTTTGCGGCGCACGAGGTCGAGCTCCCGGCGACGCTGTGGG
TGTACCCGGTGTTCGGGTACCTCCCTCACAACGCCGCCGTGACCGAGAAG
GCCAAAGCTGACTTGGGCGCAGCTTTGGAGACGCTCGATGCCCACTTGGC
GGACAAGACATATCTGGTGGGGGATAAAGTCACCCTGGCCGACATCACAG
TTGCCTCTGCGTTGGTCTACCCCTACAAGATCGTCATGAGCCCCGAGTAC
CGTTCTCAGTACCCGCACGTCCTCCGCTGGTTCCTCACCATCGTGAACCA
GCCTCAGTTCAAGAATGTGACCGGCGACGTCGTTCTGGCCGCGAAGGAGC
TGATGCCTTCTGGTGCTCCTCCCGCTCTTGCCATCCCCGCGAAGGGTGCC
AAGAAGGAGAAGAAGGACAAGGCCCCCAAGGCGGCTGCTCCCAAGCAAGA
GAAGAAGAAGGAGGCGGCGCCTCCAGCGGCAAAGTCCGGGGAGGACTTGG
AGGAACAGCTGGCAAAAGAATCGAAGAAGGCCGCCTCGGAGCACCCGCTA
AAGATAATGGATAGGGACGCGCCATCGGAGTTTGTGATGGACACATGGAA
GAAGACGTATTCCAATGCGCGTTCTTACGATGCGGCAATGGATGAGTTCT
GGAAGGTATTTGATAGCACGGGCTACTCGCTTTGGTTCTGTGAGTACCAG
TACAACAGTGAGCTCCAGAAGCTTTTCATGACGTGCAATCTCGTGAGCGG
CTTTGTCCAGCGAACGGACGAGTTGCGGAAGTGGGCTTTTGGGTGCATGT
GGATCACAGGGGAGGATGCACCAGGGAAACAGGTGGTGAGTGGGTGCTGG
TTGATGAGGGGACAGAGCGACGAGTACATCAAGAATGCCAACCCGGACGC
GGAATTCTACACGTGGACCAAAGTGGCCACGCCCGTGTCGGACGCAGACA
AGAAGAAGGTGCAGGAGTACTGGTGCAGTGATGAAAGCTTGGCAGGGCTC
CCCGTGTTGGATTGCAAGGTGTTCAAGTAAGCAACGTCAAAGTGCATGTC
CCAAGGGGGTTGGAAGGGAGGGAGGGAGGGAGAGGGTTGCAGAGGGTTGG
TTGTAGGGCGGAAAAGGAGATGGTGAACTCGGTGTTTTGGTGGTGGGAAG
AGAAGGGACAAGCATGCATGTTGATGCTGGCGTTTTTGGTATTTCTCATC
GTCGCCGTCTGTCGTCGGACATATCTCTCGAGGACAAGGAAGGGAAGAAA
GAATAAGACGGAATACGATTGGGCGTGAGTCTGGAAAGGGGATGCGGTTT
TACATGTTCTTTGTTAATTTTAGGATTGATTGCATTGTTTACTCA
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Coding sequence (CDS) from alignment at chr17:285081..287375+

>NO17G00870.1 ID=NO17G00870.1|Name=NO17G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at chr17:285081..287375+ (Nannochloropsis oceanica)
ATGGCTCTGAAACTCTACACCAACCCCGGCAACTTTCGGGCCTTTAAAAT
CCTGGTTGCTGCCCTGTATAACGGCGTGGATATTGAGGTTGTGGACCTTG
ATCTGGCGGCGAAGAAGAGCTCGGACATCCTGGCCAAGTCTCCGGCGGGC
AAGGTTCCCGTGCTCGAGACACCCCAGGGTCTTCTGTTTGAGAGCAATGC
CATCGCGCGCTACATTGCCCGTGCCCGCCGTGATACCGACCTGTATGGTG
TGTCGTTTTTTGATTCTGGCCTGGTAGATTCCTGGATTGATTTTGCGGCG
CACGAGGTCGAGCTCCCGGCGACGCTGTGGGTGTACCCGGTGTTCGGGTA
CCTCCCTCACAACGCCGCCGTGACCGAGAAGGCCAAAGCTGACTTGGGCG
CAGCTTTGGAGACGCTCGATGCCCACTTGGCGGACAAGACATATCTGGTG
GGGGATAAAGTCACCCTGGCCGACATCACAGTTGCCTCTGCGTTGGTCTA
CCCCTACAAGATCGTCATGAGCCCCGAGTACCGTTCTCAGTACCCGCACG
TCCTCCGCTGGTTCCTCACCATCGTGAACCAGCCTCAGTTCAAGAATGTG
ACCGGCGACGTCGTTCTGGCCGCGAAGGAGCTGATGCCTTCTGGTGCTCC
TCCCGCTCTTGCCATCCCCGCGAAGGGTGCCAAGAAGGAGAAGAAGGACA
AGGCCCCCAAGGCGGCTGCTCCCAAGCAAGAGAAGAAGAAGGAGGCGGCG
CCTCCAGCGGCAAAGTCCGGGGAGGACTTGGAGGAACAGCTGGCAAAAGA
ATCGAAGAAGGCCGCCTCGGAGCACCCGCTAAAGATAATGGATAGGGACG
CGCCATCGGAGTTTGTGATGGACACATGGAAGAAGACGTATTCCAATGCG
CGTTCTTACGATGCGGCAATGGATGAGTTCTGGAAGGTATTTGATAGCAC
GGGCTACTCGCTTTGGTTCTGTGAGTACCAGTACAACAGTGAGCTCCAGA
AGCTTTTCATGACGTGCAATCTCGTGAGCGGCTTTGTCCAGCGAACGGAC
GAGTTGCGGAAGTGGGCTTTTGGGTGCATGTGGATCACAGGGGAGGATGC
ACCAGGGAAACAGGTGGTGAGTGGGTGCTGGTTGATGAGGGGACAGAGCG
ACGAGTACATCAAGAATGCCAACCCGGACGCGGAATTCTACACGTGGACC
AAAGTGGCCACGCCCGTGTCGGACGCAGACAAGAAGAAGGTGCAGGAGTA
CTGGTGCAGTGATGAAAGCTTGGCAGGGCTCCCCGTGTTGGATTGCAAGG
TGTTCAAGTAA
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Synonyms
Publications