NO17G00560, NO17G00560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G00560 vs. NCBI_GenBank
Match: OQR95251.1 (hypothetical protein ACHHYP_00170 [Achlya hypogyna]) HSP 1 Score: 96.3 bits (238), Expect = 7.000e-16 Identity = 59/164 (35.98%), Postives = 87/164 (53.05%), Query Frame = 0 Query: 62 FLCYKPLHPPTGVEHCCFARFTGPQDQNLITAHANLLEIYTLHTLPNGEVVSELTASFTLAARIEALNVLPLPLRPDLPDALLITSRPAKAVLVAYEREAGELVVLDVYSFEHDALGLGSAVRAEPPAVDRLEGINDSAPTVMDPSERCAGMLVYGTQVAIMPF 226 FLC+ L TGV + F L+ +A L+IY L P G+VV L SF LA E+ +++ L R LP L +T AK VLV Y+ E L + +++FE D +GLG+A++ + + +G++ DP RC GML+Y QVA++PF Sbjct: 7 FLCHSDLVESTGVLYSLVGPFLSLGSSELLVVYAQRLDIYRLEA-PTGDVVLHLLHSFPLAGVAESAHLVYLKKR-TLP-CLALTFATAKLVLVRYDAETASLATVSLHNFEEDGMGLGTALQGDRLGRTQFQGLSSVPIAKTDPDYRCMGMLLYNDQVALVPF 167
BLAST of NO17G00560 vs. NCBI_GenBank
Match: CBJ28136.1 (cleavage and polyadenylation specificity factor CG10110-PA [Ectocarpus siliculosus]) HSP 1 Score: 95.5 bits (236), Expect = 1.200e-15 Identity = 201/657 (30.59%), Postives = 275/657 (41.86%), Query Frame = 0 Query: 61 VFLCYKPLHPPTGVEHCCFARFTGPQDQNLITAHANLLEIYTLH--------------------------TLPNGEVVSELTASFTLAARIEALNVLPLPLRPDLPDALLITSRPAKAVLVAYEREAGELVVLDVYSFEHDALGLG-----SAVRAEPPAVDRLEGINDSAPTVMDPSERCAGMLVYGTQVAIMPFQRDVLAKKVLRLLLGARPDQSSRRRHLFPVRIPPRETLATTLMSAAVHRKGRQGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPSALSSKPYILKLREGLGVRGLVKDICFLGGFMQPTLAILHALPPGWGGTVAARAHSGHISVVSC-AAGGKATALFHINLLPHDVFKIITPPSGPLESSLLVLSTNAIHFIQDGRVRTVAATNGYASTTV--ATARQPLQKAEQ-------------------TGLNCPIALDGARVGFLNSKVALLAVGTGELVGLRLETRGGKVTAVRLQKMG-----GGAGTGVFPSAIAVWRGREGGR------------------------EGRVFLASRTVDSLLMGFGLSEIEEGKEGGG 636 ++ CY+ LHPPTGV+H F T ++L+ A A+ LE+Y +H EL +F LA I AL V +PD L+++ AK LVAY+ G L + +++F+ A+G G S DR I+ S DP+ RC +V G Q+ ++P RRH+ P + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + SKP+ + L E G+ G +K FL GF +P LA+L+ G +A++ + ++++S G+A ++ + LPHD + ++ PS P+ L V+STNA+ + VR++ A NGYA TV A PL+ + + + I LD R FL LL++ TGE+ LRL VTA G GGA G P+ + R GR +G VF+ SR DSLL+ + ++ G GG Sbjct: 6 IYTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASTLELYRVHRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLELAGTFPLAGNITALAV--------IPDILVVSFGVAKMALVAYDSVLGRLETISIHNFDAGAIGPGAGGVESGYGLAAALKDRPRTISSS-----DPAGRCLAAVVAGCQLVVLP-----------------------ARRHV------PGSVFVSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGATAKGDGGAGG---------------------------------------NLAVSKPFTIDLEEA-GITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPS-PI-GGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPEREVVDLSSYDVCIELDVVRCAFLTPTSMLLSLRTGEVYALRLHLT--TVTAAAADAAGCSRPPGGAAFGT-PNRVVGQSMRPVGRASPCXXXXXXXXXXXXXXXXXXXXKGLVFMGSRVGDSLLVDYSVA--SAGTRPGG 573
BLAST of NO17G00560 vs. NCBI_GenBank
Match: OQS02703.1 (hypothetical protein THRCLA_04941 [Thraustotheca clavata]) HSP 1 Score: 92.4 bits (228), Expect = 1.000e-14 Identity = 54/167 (32.34%), Postives = 88/167 (52.69%), Query Frame = 0 Query: 62 FLCYKPLHPPTGVEHCCFARFTGPQDQNLITAHANLLEIYTLH--TLPNGEVVSELTASFTLAARIEALNVLPLPLRPDLPDALLITSRPAKAVLVAYEREAGELVVLDVYSFEHDALGLGSAVRAEPPAVDRLEGINDSAPTVMDPSERCAGMLVYGTQVAIMPFQ 227 FLC+ L TGV FT P +L+ +A +EIYTL T + +++ L SF LA E+ +++ L + L +T +K VLV Y+ L+ + +++FE DA+GLG+A++ + + G++ DP RC G+L+Y QV I+PF+ Sbjct: 7 FLCHSELVQSTGVLFSLLGSFTAPNSSDLVLIYAQRVEIYTLESPTSASKQLILHLLHSFALAGVPESASLVHLKKK----TCLALTFAFSKLVLVRYDPSTSSLITVALHNFEEDAIGLGTALQGDRFGRTQFHGLSSVPIAKSDPDHRCIGLLLYNDQVVIVPFE 169
BLAST of NO17G00560 vs. NCBI_GenBank
Match: XP_011447279.1 (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Crassostrea gigas]) HSP 1 Score: 90.9 bits (224), Expect = 2.900e-14 Identity = 59/188 (31.38%), Postives = 89/188 (47.34%), Query Frame = 0 Query: 61 VFLCYKPLHPPTGVEHCCFARFTGPQDQNLITAHANLLEIYTLHTLPNGE---------------VVSELTASFTLAARIEALNVLPLPLRPDLPDALLITSRPAKAVLVAYEREAGELVVLDVYSFEHDALGLGSAVRAEPPAVDRLEGINDSAPTVMDPSERCAGMLVYGTQVAIMPFQRDVLAKK 234 ++ YK HPPTG+EHC + F ++NL+ A N L +Y L+ P E E A+FTL I ++ + LP L D+LL++ AK +V Y+ +L ++ FE ++ G P V +DP RCA MLVYGT + I+PF+RDV+ ++ Sbjct: 1 MYSIYKQTHPPTGIEHCVYCNFFNTSERNLVLAAVNKLYVYRLNPDPEDEKNEKDEPRKPDYKMKQKMECLATFTLFGNIMSMKYVKLP--GALRDSLLLSFSEAKLSVVEYDPGTHDLQTTSLHFFEEPSMKGGFFTNYCIPEVR------------VDPDGRCAAMLVYGTHMVILPFRRDVMVEE 174
BLAST of NO17G00560 vs. NCBI_GenBank
Match: XP_011447280.1 (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Crassostrea gigas]) HSP 1 Score: 90.9 bits (224), Expect = 2.900e-14 Identity = 59/188 (31.38%), Postives = 89/188 (47.34%), Query Frame = 0 Query: 61 VFLCYKPLHPPTGVEHCCFARFTGPQDQNLITAHANLLEIYTLHTLPNGE---------------VVSELTASFTLAARIEALNVLPLPLRPDLPDALLITSRPAKAVLVAYEREAGELVVLDVYSFEHDALGLGSAVRAEPPAVDRLEGINDSAPTVMDPSERCAGMLVYGTQVAIMPFQRDVLAKK 234 ++ YK HPPTG+EHC + F ++NL+ A N L +Y L+ P E E A+FTL I ++ + LP L D+LL++ AK +V Y+ +L ++ FE ++ G P V +DP RCA MLVYGT + I+PF+RDV+ ++ Sbjct: 1 MYSIYKQTHPPTGIEHCVYCNFFNTSERNLVLAAVNKLYVYRLNPDPEDEKNEKDEPRKPDYKMKQKMECLATFTLFGNIMSMKYVKLP--GALRDSLLLSFSEAKLSVVEYDPGTHDLQTTSLHFFEEPSMKGGFFTNYCIPEVR------------VDPDGRCAAMLVYGTHMVILPFRRDVMVEE 174
BLAST of NO17G00560 vs. NCBI_GenBank
Match: ETL79667.1 (hypothetical protein L917_19750 [Phytophthora parasitica]) HSP 1 Score: 90.1 bits (222), Expect = 5.000e-14 Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 0 Query: 58 MGRVFLCYKPLHPPTGVEHCCFARFTGPQDQNLITAHANLLEIYTLHTLPNGEV--------VSELTASFTLAARIEALNVLPLP---LRPDL-----PDALLITSRPAKAVLVAYEREAGELVVLDVYSFEHDALGLGSAVRAEPPAVDRLEGINDSAPTVMDPSERCAGMLVYGTQVAIMPFQRD 229 MG+ FL ++ L T V H AR + Q +L+ L IY + P+ E V L ASF LA E++ VL LR + LL+T K V+V Y+R L L ++SFE DA+G G+ ++ E ++L G+ A +DP RC MLVY Q+ I+PF+ + Sbjct: 1 MGQHFLFHRDLVAATAVHHAVNARLSSDQQADLVLVGPQWLRIYRVEPSPSPESGVEASKGHVLHLLASFPLAGVAESIQVLKFDRSLLRKKHRFLGGEEVLLLTFPLFKWVIVGYDRRLRTLATLAMFSFEEDAIGPGATLKGEKNGQEQLLGLATQAAACVDPQTRCGAMLVYSDQLVIVPFRSE 187
BLAST of NO17G00560 vs. NCBI_GenBank
Match: ETM32901.1 (hypothetical protein L914_19793 [Phytophthora parasitica]) HSP 1 Score: 90.1 bits (222), Expect = 5.000e-14 Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 0 Query: 58 MGRVFLCYKPLHPPTGVEHCCFARFTGPQDQNLITAHANLLEIYTLHTLPNGEV--------VSELTASFTLAARIEALNVLPLP---LRPDL-----PDALLITSRPAKAVLVAYEREAGELVVLDVYSFEHDALGLGSAVRAEPPAVDRLEGINDSAPTVMDPSERCAGMLVYGTQVAIMPFQRD 229 MG+ FL ++ L T V H AR + Q +L+ L IY + P+ E V L ASF LA E++ VL LR + LL+T K V+V Y+R L L ++SFE DA+G G+ ++ E ++L G+ A +DP RC MLVY Q+ I+PF+ + Sbjct: 1 MGQHFLFHRDLVAATAVHHAVNARLSSDQQADLVLVGPQWLRIYRVEPSPSPESGVEASKGHVLHLLASFPLAGVAESIQVLKFDRSLLRKKHRFLGGEEVLLLTFPLFKWVIVGYDRRLRTLATLAMFSFEEDAIGPGATLKGEKNGQEQLLGLATQAAACVDPQTRCGAMLVYSDQLVIVPFRSE 187
BLAST of NO17G00560 vs. NCBI_GenBank
Match: ETI32630.1 (hypothetical protein F443_20594 [Phytophthora parasitica P1569]) HSP 1 Score: 89.7 bits (221), Expect = 6.600e-14 Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 0 Query: 58 MGRVFLCYKPLHPPTGVEHCCFARFTGPQDQNLITAHANLLEIYTLHTLPNGEV--------VSELTASFTLAARIEALNVLPLP---LRPDL-----PDALLITSRPAKAVLVAYEREAGELVVLDVYSFEHDALGLGSAVRAEPPAVDRLEGINDSAPTVMDPSERCAGMLVYGTQVAIMPFQRD 229 MG+ FL ++ L T V H AR + Q +L+ L IY + P+ E V L ASF LA E++ VL LR + LL+T K V+V Y+R L L ++SFE DA+G G+ ++ E ++L G+ A +DP RC MLVY Q+ I+PF+ + Sbjct: 1 MGQHFLFHRDLVAATAVHHAVNARLSSDQQADLVLVGPQWLRIYRVEPSPSPESGVEASKGHVLHLLASFPLAGVAESIQVLKFDRSLLRKKHRFLGGEEVLLLTFPLFKWVIVGYDRRLRTLATLAMFSFEEDAIGPGATLKGEKNGREQLLGLATQAAACVDPQTRCGAMLVYSDQLVIVPFRSE 187
BLAST of NO17G00560 vs. NCBI_GenBank
Match: ETK73008.1 (hypothetical protein L915_20009 [Phytophthora parasitica]) HSP 1 Score: 89.7 bits (221), Expect = 6.600e-14 Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 0 Query: 58 MGRVFLCYKPLHPPTGVEHCCFARFTGPQDQNLITAHANLLEIYTLHTLPNGEV--------VSELTASFTLAARIEALNVLPLP---LRPDL-----PDALLITSRPAKAVLVAYEREAGELVVLDVYSFEHDALGLGSAVRAEPPAVDRLEGINDSAPTVMDPSERCAGMLVYGTQVAIMPFQRD 229 MG+ FL ++ L T V H AR + Q +L+ L IY + P+ E V L ASF LA E++ VL LR + LL+T K V+V Y+R L L ++SFE DA+G G+ ++ E ++L G+ A +DP RC MLVY Q+ I+PF+ + Sbjct: 1 MGQHFLFHRDLVAATAVHHAVNARLSSDQQADLVLVGPQWLRIYRVEPSPSPESGVEASKGHVLHLLASFPLAGVAESIQVLKFDRSLLRKKHRFLGGEEVLLLTFPLFKWVIVGYDRRLRTLATLAMFSFEEDAIGPGATLKGEKNGREQLLGLATQAAACVDPQTRCGAMLVYSDQLVIVPFRSE 187
BLAST of NO17G00560 vs. NCBI_GenBank
Match: ETP02469.1 (hypothetical protein F441_20468 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 89.7 bits (221), Expect = 6.600e-14 Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 0 Query: 58 MGRVFLCYKPLHPPTGVEHCCFARFTGPQDQNLITAHANLLEIYTLHTLPNGEV--------VSELTASFTLAARIEALNVLPLP---LRPDL-----PDALLITSRPAKAVLVAYEREAGELVVLDVYSFEHDALGLGSAVRAEPPAVDRLEGINDSAPTVMDPSERCAGMLVYGTQVAIMPFQRD 229 MG+ FL ++ L T V H AR + Q +L+ L IY + P+ E V L ASF LA E++ VL LR + LL+T K V+V Y+R L L ++SFE DA+G G+ ++ E ++L G+ A +DP RC MLVY Q+ I+PF+ + Sbjct: 1 MGQHFLFHRDLVAATAVHHAVNARLSSDQQADLVLVGPQWLRIYRVEPSPSPESGVEASKGHVLHLLASFPLAGVAESIQVLKFDRSLLRKKHRFLGGEEVLLLTFPLFKWVIVGYDRRLRTLATLAMFSFEEDAIGPGATLKGEKNGREQLLGLATQAAACVDPQTRCGAMLVYSDQLVIVPFRSE 187 The following BLAST results are available for this feature:
BLAST of NO17G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G00560 ID=NO17G00560|Name=NO17G00560|organism=Nannochloropsis oceanica|type=gene|length=3763bpback to top protein sequence of NO17G00560.1 >NO17G00560.1-protein ID=NO17G00560.1-protein|Name=NO17G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1212bpback to top Synonyms
Publications
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