NO17G00460.1, NO17G00460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00460.1
Unique NameNO17G00460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2364
Alignment locationchr17:171322..173685 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:171322..173685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00460.1 vs.
Match: EWM21178.1 (trna- methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 386.7 bits (992), Expect = 1.400e-103
Identity = 248/518 (47.88%), Postives = 303/518 (58.49%), Query Frame = 0 
Query:    1 MMKVSAILPRALTLCALWGRGAASVLLPRRR--------------RSCHPSSSLH---FVLRHIPPTSTRPLSMVHFKSSCISCSRITAASCSTTRQFSSPPPDLSTPPP------------PQLLDRSLFDEIRYLQALRLPASDCHKAIQCLAPYLFRTTGQRSVVLPGECKLNLSPPLGPDERLLLFSFPSTEQHDNDEDSRCT------------TAMTKEQLKEGQHRLTDLLQSLPSAYLLPSPGYPVQLTYADLSLHQALRRLLPPSLAVPSSFETVGHLAHLNLRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEAEGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMID-VVCEGRGTGGQRGGTKSAMAVDTGKKETKKKETKKEQQQQLEEEEQPRETVVVWDVFAGVGPFSIPLAMRGCYVYANDLNDRSYHYLCQNARQNKVVLP-PFPPPASSSSSSSSFSFSSAATTTTPAVPATAA 476
            MMKVS IL ++L  C L G+ AA+    RR                   P +  +   F++       +   S+     S    S  + +S S++   SSP P LS P P            P LLD+SLF+   ++QALRLPA+ CH AIQ L+P+LFR+T QRSV+LPG C L L PPL PDERLLLF  P  +    D D+R              T+   E     Q  + +LL+++P A LLP PG PV+LTY DLSLHQALRRLLPPSL VP+SFETVGHLAHLNLR E LPYKH IAQV+LDKN KR++TVVNK+GEI +TFRVLPLEVIGG+ +        T V+VKESGA F FD+ +VYWNSRLQGEHAR+ID VV EGR   G R G       DTG                          VVVWDVFAGVGPF++PLA+RGC VYANDLN  SY YLC NA  NKV L  P  PP+S SS  +    +  ++    A P+++A
Sbjct:    1 MMKVSGILSQSLAFCVLCGQAAATAWSRRRHQLLQHHQHAFIFGLMGTFPRAGRYASNFLVEQRSRCFSATSSLSSSTLSAFPSSNSSYSSSSSSNPASSPHPFLSPPRPLSSSSSQHDSFIPSLLDKSLFESECHVQALRLPAAYCHHAIQSLSPFLFRSTTQRSVMLPGRCTLPLDPPLKPDERLLLFCPPMLDDDQEDGDARARGCAEPTRQHQTHTSHGSETSTGCQELVDNLLRTIPFASLLPPPGLPVRLTYEDLSLHQALRRLLPPSLDVPASFETVGHLAHLNLRAEVLPYKHLIAQVVLDKNRKRLQTVVNKVGEIGSTFRVLPLEVIGGKKD--------TCVRVKESGARFEFDYAQVYWNSRLQGEHARIIDLVVSEGR--EGGRAGAGVERVDDTGDS----------------------PPVVVWDVFAGVGPFALPLAVRGCQVYANDLNPDSYRYLCHNAALNKVPLSFPSVPPSSPSSLPAGLPDAKGSSARAAATPSSSA 486
The following BLAST results are available for this feature:
BLAST of NO17G00460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21178.11.400e-10347.88trna- methyltransferase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00460NO17G00460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00460.1NO17G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00460.1.cds1NO17G00460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00460.1 ID=NO17G00460.1|Name=NO17G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp
GAAGGGCTGTTCAAAAGGGACTAATATCGCAAAAGGGAAAAGGAGGGGAG
CAAACAGGAGTAAGCGAAGCATCAGCTGCTTGTCTAGAAGATGCTCTTTT
GCTGGATAGAGGGGAAATTGTCTGCATTTTGGCCATGAAAATGGTCGCGG
CCAAATCAGGTGTAAGAGCGGAGGGCGGATAACGGCCTTCAATCGGAGCA
TCCTCGCCTGTTACTCACGCAATCAACGACTACACTATATCGCTTATAGG
TTGCTTGAGAGGCCGACAGGCCAATGATGAAGGTGTCGGCCATTCTGCCT
CGGGCCTTGACGCTGTGCGCGTTATGGGGTCGTGGGGCGGCATCGGTCCT
CTTGCCAAGACGCCGACGCAGCTGCCATCCCAGCAGCAGCCTCCACTTTG
TCCTCCGACATATACCACCAACATCTACACGACCGCTGTCCATGGTGCAC
TTCAAGTCATCATGCATCTCCTGCAGTAGAATCACGGCGGCTTCGTGCTC
AACGACGCGGCAGTTCTCCTCCCCACCGCCCGACCTCTCCACCCCTCCTC
CCCCTCAGCTTCTAGACAGGAGCCTCTTCGATGAAATTCGTTACTTGCAA
GCCCTTCGTCTTCCCGCATCGGATTGCCACAAAGCCATTCAGTGCCTAGC
GCCTTATCTTTTTCGCACGACCGGGCAACGGAGTGTCGTGTTGCCTGGAG
AGTGCAAGCTCAATCTCTCGCCTCCCTTAGGGCCCGACGAGCGTCTCCTC
CTCTTCTCTTTTCCTTCCACAGAGCAGCACGACAACGACGAGGACAGTCG
CTGCACCACTGCGATGACTAAAGAACAGCTCAAAGAGGGGCAGCATAGAC
TCACCGACCTCCTTCAGTCCCTCCCCTCCGCCTACCTCCTCCCCTCCCCG
GGCTATCCCGTCCAACTCACCTACGCCGACCTCTCTCTCCACCAAGCCCT
CCGCCGACTCCTCCCTCCCTCCCTGGCCGTTCCTTCCTCCTTTGAAACCG
TTGGACATCTTGCTCACTTAAATTTGCGTCCTGAAGCCCTACCCTATAAG
CACCAAATCGCTCAAGTCATTCTCGACAAGAATCCCAAGAGAATCAAGAC
GGTCGTCAACAAGATCGGAGAGATCGAAAACACTTTTCGCGTCCTGCCCT
TGGAGGTGATTGGTGGCGAGGCAGAGGGGGAAGGAGGGAGGGAGGGAGGG
ACGTTAGTTAAGGTCAAGGAGAGTGGGGCGTGGTTTGCCTTTGACTTTCG
GGAAGTGTATTGGAACAGCCGCCTGCAGGGGGAGCACGCGCGGATGATTG
ATGTGGTATGTGAAGGAAGGGGGACGGGAGGACAACGAGGAGGTACCAAG
AGTGCTATGGCTGTGGACACCGGGAAGAAAGAGACAAAGAAGAAGGAGAC
GAAGAAAGAGCAGCAGCAGCAGCTGGAGGAGGAGGAGCAACCGAGGGAAA
CAGTGGTGGTTTGGGACGTCTTTGCAGGTGTTGGGCCTTTCTCCATCCCT
CTGGCCATGCGTGGATGTTACGTGTATGCGAATGATCTGAATGATCGGAG
CTATCACTACCTCTGTCAAAATGCCCGACAGAACAAGGTGGTCCTCCCTC
CTTTTCCCCCTCCTGCCTCCTCCTCCTCCTCTTCCTCCTCCTTCTCCTTC
TCCTCCGCAGCAACGACCACCACTCCTGCTGTTCCTGCCACTGCCGCTGC
AGTTACTGCAGGTTACCTCCACCCCAGTAACCAGGACGGACGGGCTTTCC
TTCGTTACCTCGCCTCGAAGAAAAGGCAAGTCAGCCACATAATAATGAAC
CTTCCTGCCACAGCCTATGAGTTTCTGGATGTTTTTGCTGAGGAGAAGGA
GGGGGAGATGGAGGATGGGAGGGAGGGAGGCTTAGACGGTGGGACGGAGC
TTTCTACCACTTCTGCGGAGGGGGAGGAGGAAGGGAGGGAAGGAGGGGGG
AAGAAGGAGCTGTTGTTCGGCTATTTGAAGGGGAAGGGTGTGATGGTCCA
TGTGTATATGTTTAGCAAGGCGGAGGATGCTGAGAGTGATGTAATTAAAC
GGGCGGCGGCTGTGATGGGGGTTAAGGTGGAGACGTTAGAGGAAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGTGGGTGTGTATCACGTCAGGGATGT
GGCGCCTAAGAAGAGGATGATCTGTTTGTCGTTTCCGTTGGATTTAGTGC
TGGGAGAGTGATGGAAGAATCGATAAGGAGAAAGAGGGGAGGGAGAGAAG
AAGCAGGAGGAGGAGGAAGAGGAGGAGGACAACTGTTAGGCGTCACAAAA
TTAAACCAAAGCACTTCAAGGAGCAAGGAAAGAGGTCCAGCCAATTGCAC
GCTTTCCCTTCTAC
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protein sequence of NO17G00460.1

>NO17G00460.1-protein ID=NO17G00460.1-protein|Name=NO17G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=646bp
MMKVSAILPRALTLCALWGRGAASVLLPRRRRSCHPSSSLHFVLRHIPPT
STRPLSMVHFKSSCISCSRITAASCSTTRQFSSPPPDLSTPPPPQLLDRS
LFDEIRYLQALRLPASDCHKAIQCLAPYLFRTTGQRSVVLPGECKLNLSP
PLGPDERLLLFSFPSTEQHDNDEDSRCTTAMTKEQLKEGQHRLTDLLQSL
PSAYLLPSPGYPVQLTYADLSLHQALRRLLPPSLAVPSSFETVGHLAHLN
LRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEA
EGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMIDVVCEGRG
TGGQRGGTKSAMAVDTGKKETKKKETKKEQQQQLEEEEQPRETVVVWDVF
AGVGPFSIPLAMRGCYVYANDLNDRSYHYLCQNARQNKVVLPPFPPPASS
SSSSSSFSFSSAATTTTPAVPATAAAVTAGYLHPSNQDGRAFLRYLASKK
RQVSHIIMNLPATAYEFLDVFAEEKEGEMEDGREGGLDGGTELSTTSAEG
EEEGREGGGKKELLFGYLKGKGVMVHVYMFSKAEDAESDVIKRAAAVMGV
KVETLEEGREGGREGGRVGVYHVRDVAPKKRMICLSFPLDLVLGE*
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mRNA from alignment at chr17:171322..173685+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00460.1 ID=NO17G00460.1|Name=NO17G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at chr17:171322..173685+ (Nannochloropsis oceanica)
GAAGGGCTGTTCAAAAGGGACTAATATCGCAAAAGGGAAAAGGAGGGGAG
CAAACAGGAGTAAGCGAAGCATCAGCTGCTTGTCTAGAAGATGCTCTTTT
GCTGGATAGAGGGGAAATTGTCTGCATTTTGGCCATGAAAATGGTCGCGG
CCAAATCAGGTGTAAGAGCGGAGGGCGGATAACGGCCTTCAATCGGAGCA
TCCTCGCCTGTTACTCACGCAATCAACGACTACACTATATCGCTTATAGG
TTGCTTGAGAGGCCGACAGGCCAATGATGAAGGTGTCGGCCATTCTGCCT
CGGGCCTTGACGCTGTGCGCGTTATGGGGTCGTGGGGCGGCATCGGTCCT
CTTGCCAAGACGCCGACGCAGCTGCCATCCCAGCAGCAGCCTCCACTTTG
TCCTCCGACATATACCACCAACATCTACACGACCGCTGTCCATGGTGCAC
TTCAAGTCATCATGCATCTCCTGCAGTAGAATCACGGCGGCTTCGTGCTC
AACGACGCGGCAGTTCTCCTCCCCACCGCCCGACCTCTCCACCCCTCCTC
CCCCTCAGCTTCTAGACAGGAGCCTCTTCGATGAAATTCGTTACTTGCAA
GCCCTTCGTCTTCCCGCATCGGATTGCCACAAAGCCATTCAGTGCCTAGC
GCCTTATCTTTTTCGCACGACCGGGCAACGGAGTGTCGTGTTGCCTGGAG
AGTGCAAGCTCAATCTCTCGCCTCCCTTAGGGCCCGACGAGCGTCTCCTC
CTCTTCTCTTTTCCTTCCACAGAGCAGCACGACAACGACGAGGACAGTCG
CTGCACCACTGCGATGACTAAAGAACAGCTCAAAGAGGGGCAGCATAGAC
TCACCGACCTCCTTCAGTCCCTCCCCTCCGCCTACCTCCTCCCCTCCCCG
GGCTATCCCGTCCAACTCACCTACGCCGACCTCTCTCTCCACCAAGCCCT
CCGCCGACTCCTCCCTCCCTCCCTGGCCGTTCCTTCCTCCTTTGAAACCG
TTGGACATCTTGCTCACTTAAATTTGCGTCCTGAAGCCCTACCCTATAAG
CACCAAATCGCTCAAGTCATTCTCGACAAGAATCCCAAGAGAATCAAGAC
GGTCGTCAACAAGATCGGAGAGATCGAAAACACTTTTCGCGTCCTGCCCT
TGGAGGTGATTGGTGGCGAGGCAGAGGGGGAAGGAGGGAGGGAGGGAGGG
ACGTTAGTTAAGGTCAAGGAGAGTGGGGCGTGGTTTGCCTTTGACTTTCG
GGAAGTGTATTGGAACAGCCGCCTGCAGGGGGAGCACGCGCGGATGATTG
ATGTGGTATGTGAAGGAAGGGGGACGGGAGGACAACGAGGAGGTACCAAG
AGTGCTATGGCTGTGGACACCGGGAAGAAAGAGACAAAGAAGAAGGAGAC
GAAGAAAGAGCAGCAGCAGCAGCTGGAGGAGGAGGAGCAACCGAGGGAAA
CAGTGGTGGTTTGGGACGTCTTTGCAGGTGTTGGGCCTTTCTCCATCCCT
CTGGCCATGCGTGGATGTTACGTGTATGCGAATGATCTGAATGATCGGAG
CTATCACTACCTCTGTCAAAATGCCCGACAGAACAAGGTGGTCCTCCCTC
CTTTTCCCCCTCCTGCCTCCTCCTCCTCCTCTTCCTCCTCCTTCTCCTTC
TCCTCCGCAGCAACGACCACCACTCCTGCTGTTCCTGCCACTGCCGCTGC
AGTTACTGCAGGTTACCTCCACCCCAGTAACCAGGACGGACGGGCTTTCC
TTCGTTACCTCGCCTCGAAGAAAAGGCAAGTCAGCCACATAATAATGAAC
CTTCCTGCCACAGCCTATGAGTTTCTGGATGTTTTTGCTGAGGAGAAGGA
GGGGGAGATGGAGGATGGGAGGGAGGGAGGCTTAGACGGTGGGACGGAGC
TTTCTACCACTTCTGCGGAGGGGGAGGAGGAAGGGAGGGAAGGAGGGGGG
AAGAAGGAGCTGTTGTTCGGCTATTTGAAGGGGAAGGGTGTGATGGTCCA
TGTGTATATGTTTAGCAAGGCGGAGGATGCTGAGAGTGATGTAATTAAAC
GGGCGGCGGCTGTGATGGGGGTTAAGGTGGAGACGTTAGAGGAAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGTGGGTGTGTATCACGTCAGGGATGT
GGCGCCTAAGAAGAGGATGATCTGTTTGTCGTTTCCGTTGGATTTAGTGC
TGGGAGAGTGATGGAAGAATCGATAAGGAGAAAGAGGGGAGGGAGAGAAG
AAGCAGGAGGAGGAGGAAGAGGAGGAGGACAACTGTTAGGCGTCACAAAA
TTAAACCAAAGCACTTCAAGGAGCAAGGAAAGAGGTCCAGCCAATTGCAC
GCTTTCCCTTCTAC
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Coding sequence (CDS) from alignment at chr17:171322..173685+

>NO17G00460.1 ID=NO17G00460.1|Name=NO17G00460.1|organism=Nannochloropsis oceanica|type=CDS|length=1938bp|location=Sequence derived from alignment at chr17:171322..173685+ (Nannochloropsis oceanica)
ATGATGAAGGTGTCGGCCATTCTGCCTCGGGCCTTGACGCTGTGCGCGTT
ATGGGGTCGTGGGGCGGCATCGGTCCTCTTGCCAAGACGCCGACGCAGCT
GCCATCCCAGCAGCAGCCTCCACTTTGTCCTCCGACATATACCACCAACA
TCTACACGACCGCTGTCCATGGTGCACTTCAAGTCATCATGCATCTCCTG
CAGTAGAATCACGGCGGCTTCGTGCTCAACGACGCGGCAGTTCTCCTCCC
CACCGCCCGACCTCTCCACCCCTCCTCCCCCTCAGCTTCTAGACAGGAGC
CTCTTCGATGAAATTCGTTACTTGCAAGCCCTTCGTCTTCCCGCATCGGA
TTGCCACAAAGCCATTCAGTGCCTAGCGCCTTATCTTTTTCGCACGACCG
GGCAACGGAGTGTCGTGTTGCCTGGAGAGTGCAAGCTCAATCTCTCGCCT
CCCTTAGGGCCCGACGAGCGTCTCCTCCTCTTCTCTTTTCCTTCCACAGA
GCAGCACGACAACGACGAGGACAGTCGCTGCACCACTGCGATGACTAAAG
AACAGCTCAAAGAGGGGCAGCATAGACTCACCGACCTCCTTCAGTCCCTC
CCCTCCGCCTACCTCCTCCCCTCCCCGGGCTATCCCGTCCAACTCACCTA
CGCCGACCTCTCTCTCCACCAAGCCCTCCGCCGACTCCTCCCTCCCTCCC
TGGCCGTTCCTTCCTCCTTTGAAACCGTTGGACATCTTGCTCACTTAAAT
TTGCGTCCTGAAGCCCTACCCTATAAGCACCAAATCGCTCAAGTCATTCT
CGACAAGAATCCCAAGAGAATCAAGACGGTCGTCAACAAGATCGGAGAGA
TCGAAAACACTTTTCGCGTCCTGCCCTTGGAGGTGATTGGTGGCGAGGCA
GAGGGGGAAGGAGGGAGGGAGGGAGGGACGTTAGTTAAGGTCAAGGAGAG
TGGGGCGTGGTTTGCCTTTGACTTTCGGGAAGTGTATTGGAACAGCCGCC
TGCAGGGGGAGCACGCGCGGATGATTGATGTGGTATGTGAAGGAAGGGGG
ACGGGAGGACAACGAGGAGGTACCAAGAGTGCTATGGCTGTGGACACCGG
GAAGAAAGAGACAAAGAAGAAGGAGACGAAGAAAGAGCAGCAGCAGCAGC
TGGAGGAGGAGGAGCAACCGAGGGAAACAGTGGTGGTTTGGGACGTCTTT
GCAGGTGTTGGGCCTTTCTCCATCCCTCTGGCCATGCGTGGATGTTACGT
GTATGCGAATGATCTGAATGATCGGAGCTATCACTACCTCTGTCAAAATG
CCCGACAGAACAAGGTGGTCCTCCCTCCTTTTCCCCCTCCTGCCTCCTCC
TCCTCCTCTTCCTCCTCCTTCTCCTTCTCCTCCGCAGCAACGACCACCAC
TCCTGCTGTTCCTGCCACTGCCGCTGCAGTTACTGCAGGTTACCTCCACC
CCAGTAACCAGGACGGACGGGCTTTCCTTCGTTACCTCGCCTCGAAGAAA
AGGCAAGTCAGCCACATAATAATGAACCTTCCTGCCACAGCCTATGAGTT
TCTGGATGTTTTTGCTGAGGAGAAGGAGGGGGAGATGGAGGATGGGAGGG
AGGGAGGCTTAGACGGTGGGACGGAGCTTTCTACCACTTCTGCGGAGGGG
GAGGAGGAAGGGAGGGAAGGAGGGGGGAAGAAGGAGCTGTTGTTCGGCTA
TTTGAAGGGGAAGGGTGTGATGGTCCATGTGTATATGTTTAGCAAGGCGG
AGGATGCTGAGAGTGATGTAATTAAACGGGCGGCGGCTGTGATGGGGGTT
AAGGTGGAGACGTTAGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGTGGGTGTGTATCACGTCAGGGATGTGGCGCCTAAGAAGAGGATGATCT
GTTTGTCGTTTCCGTTGGATTTAGTGCTGGGAGAGTGA
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Synonyms
Publications