NO17G00460, NO17G00460 (gene) Nannochloropsis oceanica

Overview
NameNO17G00460
Unique NameNO17G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2364
Alignment locationchr17:171322..173685 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrna-methyltransferase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:171322..173685 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR030382MeTrfase_TRM5/TYW2
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008168methyltransferase activity
Homology
BLAST of NO17G00460 vs. NCBI_GenBank
Match: EWM21178.1 (trna- methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 368.6 bits (945), Expect = 3.900e-98
Identity = 240/481 (49.90%), Postives = 283/481 (58.84%), Query Frame = 0
Query:    1 MMKVSAILPRALTLCALWGRGAASVLLPRRRRSC-HPSSSLHFVLRHIPPTSTRPLS--MVHFKSSCISCS--------------------------RITAASCSXXXXXXXXXXXXXXXXXXXLLDRSLFDEIRYLQALRLPASDCHKAIQCLAPYLFRTTGQRSVVLPGECKLNLSPPLGPDERLLLFSFPSTEQHDNDEDSRCT------------TAMTKEQLKEGQHRLTDLLQSLPSAYLLPSPGYPVQLTYADLSLHQALRRLLPPSLAVPSSFETVGHLAHLNLRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEAEGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMID-VVCEGRGTGGQRGGTKSAMAVDTGKXXXXXXXXXXXXXXXXXXXXXXXXXVVVWDVFAGVGPFSIPLAMRGCYVYANDLNDRSYHYLCQNARQNKV 440
            MMKVS IL ++L  C L G+ AA+    RR +   H   +  F L    P + R  S  +V  +S C S +                                  XXXXXXXX           LLD+SLF+   ++QALRLPA+ CH AIQ L+P+LFR+T QRSV+LPG C L L PPL PDERLLLF  P  +    D D+R              T+   E     Q  + +LL+++P A LLP PG PV+LTY DLSLHQALRRLLPPSL VP+SFETVGHLAHLNLR E LPYKH IAQV+LDKN KR++TVVNK+GEI +TFRVLPLEVIGG+ +        T V+VKESGA F FD+ +VYWNSRLQGEHAR+ID VV EGR   G R G       DTG                          VVVWDVFAGVGPF++PLA+RGC VYANDLN  SY YLC NA  NKV
Sbjct:    1 MMKVSGILSQSLAFCVLCGQAAATAWSRRRHQLLQHHQHAFIFGLMGTFPRAGRYASNFLVEQRSRCFSATSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSQHDSFIPSLLDKSLFESECHVQALRLPAAYCHHAIQSLSPFLFRSTTQRSVMLPGRCTLPLDPPLKPDERLLLFCPPMLDDDQEDGDARARGCAEPTRQHQTHTSHGSETSTGCQELVDNLLRTIPFASLLPPPGLPVRLTYEDLSLHQALRRLLPPSLDVPASFETVGHLAHLNLRAEVLPYKHLIAQVVLDKNRKRLQTVVNKVGEIGSTFRVLPLEVIGGKKD--------TCVRVKESGARFEFDYAQVYWNSRLQGEHARIIDLVVSEGR--EGGRAGAGVERVDDTG----------------------DSPPVVVWDVFAGVGPFALPLAVRGCQVYANDLNPDSYRYLCHNAALNKV 449          
BLAST of NO17G00460 vs. NCBI_GenBank
Match: EWM23671.1 (trna (guanine-n -)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 293.9 bits (751), Expect = 1.200e-75
Identity = 203/550 (36.91%), Postives = 258/550 (46.91%), Query Frame = 0
Query:   97 LDRSLFDEIRYLQALRLPASDCHKAIQCLAPYLFRTTGQRSVVLPGECKLNLSPPLGPDERLLLFSFPSTEQHDNDEDSRCTTAMTKEQLKEGQHRLTDLLQSLPSAYLLPS------PGYPVQLTYADLSLHQALRRLLPP-SLAVPSSFETVGHLAHLNLRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEAEGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMIDVVCEGRGTGGQRGGTKSAMAVDTGKXXXXXXXXXXXXXXXXXXXXXXXXXVVVWDVFAGVGPFSIPLAMRGCYVYANDLNDRSYHYLCQNARQNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGYLHPSNQDGRAFLRYLASKKRQVSHIIMNLPATAYEFLDVFAEEKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKELLFGYLKGKGVMVHVYMFSKAEDAESDVIKRAAAVMGVKVETLEXXXXXXXXXXXXXVYHVRDVAPKKRMICLSFPL 640
            LD S F     + ALRLPA  C+ A++ L P+L R    + +V P +         G   RLLL +    EQH   ED+        + +K   H         P+A   P         + V L YA  S  + LR++  P  L  P+SFETV H+AHLNLR   LPYK  IAQVILDKN  RI+TVVNK+G I+  +R  PLEV+ GE++          V V+E+GA F F+F EVYWNSRL  EHAR+++ V         R    S                                  VVWDVFAGVGPF+IPL +RGC V+ANDLN RS+HYL  N  +NKV                                         Y+ P N+DGR FLR  A + + V HIIMNLPATA EFLD FA E+E                                G+   LF YL+ + + VH Y FSKAED  ++ + RA+A++G  +                 V+ VRDVAPKK M+CLSFPL
Sbjct:   28 LDPSAFRRTFRVAALRLPAKYCNSAVKQLQPHLLRLRHVKGIVKPEDG--------GDTHRLLLLATEVNEQH---EDTAVELTDLPDDVKTFVHATNAQEDPTPAAEAEPPCSRVSLTTHQVHLDYASFSAEEVLRQVFAPLRLEAPTSFETVDHVAHLNLRDAHLPYKRLIAQVILDKNAPRIRTVVNKLGSIQTQYRTFPLEVLAGESD--------LNVSVREAGATFRFNFAEVYWNSRLSTEHARLVNAVVAHFHASRPRVPLASC---------------------------------VVWDVFAGVGPFAIPLGLRGCVVHANDLNPRSHHYLVDNIARNKV---------------------------------------GAYVTPYNRDGRDFLRERARQHQPVDHIIMNLPATALEFLDTFAAERE-------------------------ETAGEEEGRSRGLFDYLEARPI-VHAYCFSKAEDPTAEALARASAILGCVL---------VNGKNGVSVHRVRDVAPKKEMLCLSFPL 451          
BLAST of NO17G00460 vs. NCBI_GenBank
Match: XP_005853561.1 (trna (guanine-n -)-methyltransferase-like protein [Nannochloropsis gaditana CCMP526] >EKU22797.1 trna (guanine-n -)-methyltransferase-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 248.1 bits (632), Expect = 7.700e-62
Identity = 169/454 (37.22%), Postives = 213/454 (46.92%), Query Frame = 0
Query:  153 GPDERLLLFSFPSTEQHDNDEDSRCTTAMTKEQLKEGQHRLTDLLQSLPSAYLLPS------PGYPVQLTYADLSLHQALRRLLPP-SLAVPSSFETVGHLAHLNLRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEAEGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMIDVVCEGRGTGGQRGGTKSAMAVDTGKXXXXXXXXXXXXXXXXXXXXXXXXXVVVWDVFAGVGPFSIPLAMRGCYVYANDLNDRSYHYLCQNARQNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGYLHPSNQDGRAFLRYLASKKRQVSHIIMNLPATAYEFLDVFAEEKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKELLFGYLKGKGVMVHVYMFSKAEDAESDVIKRAAAVMG 600
            G   RLLL +    EQH   ED+        + +K   H         P+A   P         + V L YA  S  + LR++  P  L  P+SFETV H+AHLNLR   LPYK  IAQVILDKN  RI+TVVNK+G I+  +R  PLEV+ GE++          V V+E+GA F F+F EVYWNSRL  EHAR+++ V         R    S                                  VVWDVFAGVGPF+IPL +RGC V+ANDLN RS+HYL  N  +NKV                                         Y+ P N+DGR FLR  A + + V HIIMNLPATA EFLD FA E+E                                G+   LF YL+ + + VH Y FSKAED  ++ + RA+A++G
Sbjct:   22 GDTHRLLLLATEVNEQH---EDTAVELTDLPDDVKTFVHATNAQEDPTPAAEAEPPCSRVSLTTHQVHLDYASFSAEEVLRQVFAPLRLEAPTSFETVDHVAHLNLRDAHLPYKRLIAQVILDKNAPRIRTVVNKLGSIQTQYRTFPLEVLAGESD--------LNVSVREAGATFRFNFAEVYWNSRLSTEHARLVNAVVAHFHASRPRVPLASC---------------------------------VVWDVFAGVGPFAIPLGLRGCVVHANDLNPRSHHYLVDNIARNKV---------------------------------------GAYVTPYNRDGRDFLRERARQHQPVDHIIMNLPATALEFLDTFAAERE-------------------------ETAGEEEGRSRGLFDYLEARPI-VHAYCFSKAEDPTAEALARASAILG 366          
BLAST of NO17G00460 vs. NCBI_GenBank
Match: XP_005855630.1 (hypothetical protein NGA_0599400 [Nannochloropsis gaditana CCMP526] >EKU20736.1 hypothetical protein NGA_0599400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 226.1 bits (575), Expect = 3.100e-55
Identity = 112/156 (71.79%), Postives = 131/156 (83.97%), Query Frame = 0
Query:  190 QHRLTDLLQSLPSAYLLPSPGYPVQLTYADLSLHQALRRLLPPSLAVPSSFETVGHLAHLNLRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEAEGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMIDVV 346
            Q  + +LL+++PSA LLP PG PV+LTY DLSLHQALRRLLPPSL VP+SFETVGHLAHLNLR E LPYKH IAQV+LDKN KR++TVVNK+GEI +TFRVLPLEVIGG+ +        T V+VKESGAWF FD+ +VYWNSRLQGEHAR+ID+V
Sbjct:   38 QELVDNLLRTIPSASLLPPPGLPVRLTYEDLSLHQALRRLLPPSLDVPASFETVGHLAHLNLRAEVLPYKHLIAQVVLDKNRKRLQTVVNKVGEIGSTFRVLPLEVIGGKKD--------TCVRVKESGAWFEFDYAQVYWNSRLQGEHARIIDLV 185          
BLAST of NO17G00460 vs. NCBI_GenBank
Match: PRP75835.1 (putative tRNA (guanine-N(1)-)-methyltransferase [Planoprotostelium fungivorum])

HSP 1 Score: 225.7 bits (574), Expect = 4.100e-55
Identity = 161/455 (35.38%), Postives = 213/455 (46.81%), Query Frame = 0
Query:  195 DLLQSLPSAYLLPSPGYPVQLTYADLSLHQALRRLLPPSLA---VPSSFETVGHLAHLNLRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEAEGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMIDVVCEGRGTGGQRGGTKSAMAVDTGKXXXXXXXXXXXXXXXXXXXXXXXXXVVVWDVFAGVGPFSIPLAM-RGCYVYANDLNDRSYHYLCQNARQNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGYLHPSNQDGRAFLRYLASKK--RQVSHIIMNLPATAYEFLDVFAE--EKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKELLFGYLKGKGVMVHVYMFSKAEDAESDVIKRAAAVMGVKVETLEXXXXXXXXXXXXXVYHVRDVAPKKRMICLSFPLDL 642
            D + SLP   L+    + + L Y++ +  Q L+R+LP  L+   VPS+FE +GH+AH+NLRPE   YKHQIAQVI+DKNP  +KTVVNK G+IEN FRV P+E + GE   E         ++KES   F FDF +VYWNSRLQ EH R++                        GK                          V+ DVFAGVGPF++P A  +GC VYANDLN RS++YL  NA QNKV                                          +H  N DGR FLR + + +  ++++ I+MNLPA A EFLDVF    +K+                                         L  K  +VH Y FS   D +SD++K+A   +G ++E  E             V+ VRDV+P K M+CLSFPL L
Sbjct:   78 DSILSLPDVELIQ---HDLHLDYSNFTTDQVLKRILPSHLSEKGVPSAFEVIGHIAHVNLRPEYDEYKHQIAQVIMDKNP-ALKTVVNKTGKIENEFRVFPMEFLAGEETLE--------TQLKESNCVFKFDFGQVYWNSRLQMEHDRLV------------------------GKFSSQD---------------------VICDVFAGVGPFAVPAAKNKGCVVYANDLNPRSFNYLVSNATQNKV---------------------------------------QNLVHTYNLDGREFLRKMFTSEVGQKITRIVMNLPALAVEFLDVFRNLFDKDS----------------------------------------LPKKAPIVHCYGFSSDPDPKSDIVKQAEKFLGCEIEPTE-------------VHIVRDVSPSKEMLCLSFPLPL 383          
BLAST of NO17G00460 vs. NCBI_GenBank
Match: XP_012200416.1 (hypothetical protein SPRG_05742 [Saprolegnia parasitica CBS 223.65] >KDO28871.1 hypothetical protein SPRG_05742 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 223.8 bits (569), Expect = 1.600e-54
Identity = 151/431 (35.03%), Postives = 195/431 (45.24%), Query Frame = 0
Query:  211 YPVQLTYADLSLHQALRRLLPPSLA-VPSSFETVGHLAHLNLRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEAEGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMIDVVCEGRGTGGQRGGTKSAMAVDTGKXXXXXXXXXXXXXXXXXXXXXXXXXVVVWDVFAGVGPFSIPLAMRGCYVYANDLNDRSYHYLCQNARQNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGYLHPSNQDGRAFLRYLASKKRQVSHIIMNLPATAYEFLDVFAEEKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKELLFGYLKGKGVMVHVYMFSKAEDA-ESDVIKRAAAVMGVKVETLEXXXXXXXXXXXXXVYHVRDVAPKKRMICLSFPL 640
            + +QL Y+   +   LR+LLP S+  VP+SFET+GH+AH+NLR   LPYKH I QVILDKN  RIKTVVNK   I+  FR  P+EV+ G        E   +V++ ESG  F F+F +VYWNSRLQ EH RMI                      D  K                          ++ D+  G+GPF++PLA +GC VYANDLN +S+ YL  N  +NKV                                          LHP N DGRAFL  L  K+ Q + ++MNLPA A EFLD F                                           F + +G+   +H Y FS   DA E DV +RA A++G K++                +Y VRDVAPKK M+C+SF L
Sbjct:   89 HEIQLDYSFWGVDHVLRKLLPASITEVPASFETIGHIAHINLREFHLPYKHIIGQVILDKNGPRIKTVVNKTDTIDTVFRTFPMEVLAG--------EDNMVVELHESGCNFTFNFAQVYWNSRLQQEHLRMI-------------------RQFDPKKD-------------------------IICDMMCGIGPFAVPLAKKGCTVYANDLNPKSFEYLQINRTKNKV---------------------------------------EAKLHPHNMDGRAFLHELLEKRIQFTQVLMNLPAIALEFLDAFPGR----------------------------------------FDHWEGELPFIHTYCFSSEVDAPEKDVQERAEAILGAKLD-----------MATTTIYQVRDVAPKKLMMCISFQL 377          
BLAST of NO17G00460 vs. NCBI_GenBank
Match: XP_008879605.1 (hypothetical protein H310_13756 [Aphanomyces invadans] >ETV91679.1 hypothetical protein H310_13756 [Aphanomyces invadans])

HSP 1 Score: 222.6 bits (566), Expect = 3.500e-54
Identity = 153/431 (35.50%), Postives = 195/431 (45.24%), Query Frame = 0
Query:  211 YPVQLTYADLSLHQALRRLLPPSLA-VPSSFETVGHLAHLNLRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEAEGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMIDVVCEGRGTGGQRGGTKSAMAVDTGKXXXXXXXXXXXXXXXXXXXXXXXXXVVVWDVFAGVGPFSIPLAMRGCYVYANDLNDRSYHYLCQNARQNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGYLHPSNQDGRAFLRYLASKKRQVSHIIMNLPATAYEFLDVFAEEKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKELLFGYLKGKGVMVHVYMFSKAEDA-ESDVIKRAAAVMGVKVETLEXXXXXXXXXXXXXVYHVRDVAPKKRMICLSFPL 640
            + + L Y+  S+   LRRLLP S+  +P+SFET+GH+AHLNLR   LPYKH I QVILDKN  RIKTVVNK   I++ FR  P+EV+ GE   E        V + ES   F F+F +VYWNSRLQ EH R++                +S    D                             VV D+  G+GPF+IPL  RGC VYANDLN +S+ YL  N ++NKV                                        G +H  N DGRAFL +L S K Q + +IMNLPA A EFLD F  +                                        F   +G+   +H Y F+   DA E DV +R   ++G K+E                V+HVRDVAPKK M+C+SF L
Sbjct:   98 HEISLDYSFWSVEHVLRRLLPESITEIPASFETIGHIAHLNLRDFHLPYKHVIGQVILDKNTPRIKTVVNKTDVIDSVFRTFPMEVLAGEDNME--------VVLHESDCNFHFNFAQVYWNSRLQQEHLRLV----------------RSLQPTD-----------------------------VVCDMMCGIGPFAIPLGKRGCVVYANDLNPKSFEYLNVNRKKNKV---------------------------------------EGKVHSFNMDGRAFLAHLLSSKIQFTQVIMNLPAIALEFLDAFPGQ----------------------------------------FDEWEGELPTIHTYCFTTNMDAPEKDVQERTETILGAKLEEFS-------------VHHVRDVAPKKLMMCISFKL 383          
BLAST of NO17G00460 vs. NCBI_GenBank
Match: OQS04538.1 (tRNA (guanine-N(1)-)-methyltransferase [Thraustotheca clavata])

HSP 1 Score: 222.2 bits (565), Expect = 4.500e-54
Identity = 157/467 (33.62%), Postives = 204/467 (43.68%), Query Frame = 0
Query:  190 QHRLTDLLQSLPSAYLLPSP---------------GYPVQLTYADLSLHQALRRLLPPSLA-VPSSFETVGHLAHLNLRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEAEGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMIDVVCEGRGTGGQRGGTKSAMAVDTGKXXXXXXXXXXXXXXXXXXXXXXXXXVVVWDVFAGVGPFSIPLAMRGCYVYANDLNDRSYHYLCQNARQNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGYLHPSNQDGRAFLRYLASKKRQVSHIIMNLPATAYEFLDVFAEEKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKELLFGYLKGKGVMVHVYMFSKAEDA-ESDVIKRAAAVMGVKVETLEXXXXXXXXXXXXXVYHVRDVAPKKRMICLSFPL 640
            QH+L  L + +    L+ SP                + + L Y+   + Q LR+L+P S+  +PSSFET+GH+AH+NLR   LPYKH I QVILDKN  RIKTVVNKI  I+  FR  P+EV+ G        E   +V++ ESG  F F+F EVYWNSRLQ EH RMI                +     D                             V+ D+  G+GPF++PLA +GC VYANDLN +SY YL  N ++NKV                                          LH  N DGR F+  L   + Q S ++MNLPA A EFLD F                                           F + +G+   +H Y FS   DA E DV KRA A++G  ++                +Y VRDVAPKK M+C+SF L
Sbjct:   54 QHKLVLLNEKIQGDELVNSPKALQDYIKQENLSVQHHEITLDYSFFGVDQVLRKLMPESITEIPSSFETIGHIAHINLRDFHLPYKHLIGQVILDKNQPRIKTVVNKIDTIDTVFRTFPMEVLAG--------EDNMVVELNESGCVFNFNFAEVYWNSRLQQEHLRMI----------------RQFSTTD-----------------------------VICDMMCGIGPFAVPLAKKGCKVYANDLNPKSYEYLNVNRKKNKV---------------------------------------EANLHTFNMDGRDFVHKLLDDRIQFSQVLMNLPAIALEFLDAFPGR----------------------------------------FDHWEGELPWIHTYCFSSQVDAPELDVQKRAEAILGASLD-----------MEKTKIYQVRDVAPKKLMMCISFQL 377          
BLAST of NO17G00460 vs. NCBI_GenBank
Match: OQR92280.1 (tRNA (guanine-N(1)-)-methyltransferase [Achlya hypogyna])

HSP 1 Score: 221.9 bits (564), Expect = 5.900e-54
Identity = 151/431 (35.03%), Postives = 192/431 (44.55%), Query Frame = 0
Query:  211 YPVQLTYADLSLHQALRRLLPPSLA-VPSSFETVGHLAHLNLRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEAEGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMIDVVCEGRGTGGQRGGTKSAMAVDTGKXXXXXXXXXXXXXXXXXXXXXXXXXVVVWDVFAGVGPFSIPLAMRGCYVYANDLNDRSYHYLCQNARQNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGYLHPSNQDGRAFLRYLASKKRQVSHIIMNLPATAYEFLDVFAEEKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKELLFGYLKGKGVMVHVYMFSKAEDA-ESDVIKRAAAVMGVKVETLEXXXXXXXXXXXXXVYHVRDVAPKKRMICLSFPL 640
            + + L Y+   +   LR+LLP S+  +PSSFET+GH+AHLNLR   LPYKH I QVILDKN  RIKTVVNK   I+  FR  P+EV+ G        E   +V++ ESG  F F+F +VYWNSRLQ EH RMI                      D  K                          V+ D+  G+GPF++PLA +GC VYANDLN +SY YL  N  +NKV                                          LHP N DGRAFL  L   + Q + ++MNLPA A EFLD F                                           F + +G+   +H Y FS   DA E DV +RA A++G  ++                +Y VRDVAPKK M+C+SF L
Sbjct:   93 HEITLDYSFWGVDHVLRKLLPESITEIPSSFETIGHIAHLNLREFHLPYKHLIGQVILDKNEPRIKTVVNKTDTIDTVFRTFPMEVLAG--------EDNMVVELNESGCHFTFNFAQVYWNSRLQQEHLRMI-------------------RQFDPKKD-------------------------VICDMMCGIGPFAVPLAKKGCTVYANDLNPKSYEYLQLNRAKNKV---------------------------------------EANLHPFNMDGRAFLHKLLDDRIQFTQVLMNLPAIALEFLDAFPGR----------------------------------------FDHWEGELPYIHTYCFSSQVDAPEKDVQERAEAILGAPLD-----------MTTTTIYQVRDVAPKKLMMCISFQL 381          
BLAST of NO17G00460 vs. NCBI_GenBank
Match: OWZ18647.1 (TRNA (guanine-N(1)-)-methyltransferase [Phytophthora megakarya])

HSP 1 Score: 221.9 bits (564), Expect = 5.900e-54
Identity = 175/551 (31.76%), Postives = 237/551 (43.01%), Query Frame = 0
Query:   96 LLDRSLFDEIRYLQALRLPASDCHKAIQCLAPYLFRTTGQRSVVLPGECKLNLSPPLGPDERLLLFSFPSTEQHDNDEDSRCTTAMTKEQLKEGQHRLTDLLQSLPSAYLLPSPGYPVQLTYADLSLHQALRRLLPPSLAVPSSFETVGHLAHLNLRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEAEGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMI------DVVCEGRGTGGQRGGTKSAMAVDTGKXXXXXXXXXXXXXXXXXXXXXXXXXVVVWDVFAGVGPFSIPLAMRGCYVYANDLNDRSYHYLCQNARQNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGYLHPSNQDGRAFLRYLASKKRQVSHIIMNLPATAYEFLDVFAEEKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKELLFGYLKGKGVMVHVYMFSKAEDAESDVIKRAAAVMGVKVETLEXXXXXXXXXXXXXVYH-VRDVAPKKRMICLSFPL 640
            LLD+ LF +   +  +R+ A    + ++ L  +L      R+VV       N  P      +L+L             +++ T A T + L E      DL+  L     L    + ++L Y+  ++ Q L  LLP  + +PSSFETVGH+AHLNLR   LPYK+ I QVILDKN  +I+TVVNK   IE  FR  P+EV+ G+ + E        V V ES A F F++ EVYWNSRLQ EH R+I      DVVC                                                   D+  G+GPF+IP+A+ G  VYANDLN RS+HYL +N   NKV                                          + P N DGR FL  L S+K+Q + ++MNLPA A EFLD F  +                                        F + +G+   VH Y FS AED + DV +RA  +MG +++                 +H VRDVAPKK M+C+SF L
Sbjct:    5 LLDKKLFKKTLEVVGVRVEAKKIGRVVKKLHGHLLNLPRLRNVV---PDPTNPDPYKNSSSKLILL------------NAKVTNAETLQPLNE------DLITFLKEE-SLAFVNHAIELDYSYFAVDQVLSELLPKGMDIPSSFETVGHIAHLNLRDNQLPYKNVIGQVILDKN-AQIRTVVNKTDNIETKFRTFPMEVLAGDDDME--------VTVHESKATFRFNYAEVYWNSRLQQEHLRIIRQIKPHDVVC---------------------------------------------------DMMCGIGPFAIPVALNGTKVYANDLNPRSFHYLKENITLNKVEK---------------------------------------LVTPYNLDGREFLATLLSEKKQFTQVLMNLPAIALEFLDAFPGQ----------------------------------------FDHWEGELPYVHCYCFSNAEDVKQDVKERAEKIMGGELD------------PDRTTFHLVRDVAPKKVMVCISFQL 382          
The following BLAST results are available for this feature:
BLAST of NO17G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21178.13.900e-9849.90trna- methyltransferase [Nannochloropsis gaditana][more]
EWM23671.11.200e-7536.91trna (guanine-n -)-methyltransferase [Nannochlorop... [more]
XP_005853561.17.700e-6237.22trna (guanine-n -)-methyltransferase-like protein ... [more]
XP_005855630.13.100e-5571.79hypothetical protein NGA_0599400 [Nannochloropsis ... [more]
PRP75835.14.100e-5535.38putative tRNA (guanine-N(1)-)-methyltransferase [P... [more]
XP_012200416.11.600e-5435.03hypothetical protein SPRG_05742 [Saprolegnia paras... [more]
XP_008879605.13.500e-5435.50hypothetical protein H310_13756 [Aphanomyces invad... [more]
OQS04538.14.500e-5433.62tRNA (guanine-N(1)-)-methyltransferase [Thraustoth... [more]
OQR92280.15.900e-5435.03tRNA (guanine-N(1)-)-methyltransferase [Achlya hyp... [more]
OWZ18647.15.900e-5431.76TRNA (guanine-N(1)-)-methyltransferase [Phytophtho... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004763NSK004763Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00460.1NO17G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559059gene_7839Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100111g6gene9247Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00460.1NO17G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00460 ID=NO17G00460|Name=NO17G00460|organism=Nannochloropsis oceanica|type=gene|length=2364bp
GAAGGGCTGTTCAAAAGGGACTAATATCGCAAAAGGGAAAAGGAGGGGAG
CAAACAGGAGTAAGCGAAGCATCAGCTGCTTGTCTAGAAGATGCTCTTTT
GCTGGATAGAGGGGAAATTGTCTGCATTTTGGCCATGAAAATGGTCGCGG
CCAAATCAGGTGTAAGAGCGGAGGGCGGATAACGGCCTTCAATCGGAGCA
TCCTCGCCTGTTACTCACGCAATCAACGACTACACTATATCGCTTATAGG
TTGCTTGAGAGGCCGACAGGCCAATGATGAAGGTGTCGGCCATTCTGCCT
CGGGCCTTGACGCTGTGCGCGTTATGGGGTCGTGGGGCGGCATCGGTCCT
CTTGCCAAGACGCCGACGCAGCTGCCATCCCAGCAGCAGCCTCCACTTTG
TCCTCCGACATATACCACCAACATCTACACGACCGCTGTCCATGGTGCAC
TTCAAGTCATCATGCATCTCCTGCAGTAGAATCACGGCGGCTTCGTGCTC
AACGACGCGGCAGTTCTCCTCCCCACCGCCCGACCTCTCCACCCCTCCTC
CCCCTCAGCTTCTAGACAGGAGCCTCTTCGATGAAATTCGTTACTTGCAA
GCCCTTCGTCTTCCCGCATCGGATTGCCACAAAGCCATTCAGTGCCTAGC
GCCTTATCTTTTTCGCACGACCGGGCAACGGAGTGTCGTGTTGCCTGGAG
AGTGCAAGCTCAATCTCTCGCCTCCCTTAGGGCCCGACGAGCGTCTCCTC
CTCTTCTCTTTTCCTTCCACAGAGCAGCACGACAACGACGAGGACAGTCG
CTGCACCACTGCGATGACTAAAGAACAGCTCAAAGAGGGGCAGCATAGAC
TCACCGACCTCCTTCAGTCCCTCCCCTCCGCCTACCTCCTCCCCTCCCCG
GGCTATCCCGTCCAACTCACCTACGCCGACCTCTCTCTCCACCAAGCCCT
CCGCCGACTCCTCCCTCCCTCCCTGGCCGTTCCTTCCTCCTTTGAAACCG
TTGGACATCTTGCTCACTTAAATTTGCGTCCTGAAGCCCTACCCTATAAG
CACCAAATCGCTCAAGTCATTCTCGACAAGAATCCCAAGAGAATCAAGAC
GGTCGTCAACAAGATCGGAGAGATCGAAAACACTTTTCGCGTCCTGCCCT
TGGAGGTGATTGGTGGCGAGGCAGAGGGGGAAGGAGGGAGGGAGGGAGGG
ACGTTAGTTAAGGTCAAGGAGAGTGGGGCGTGGTTTGCCTTTGACTTTCG
GGAAGTGTATTGGAACAGCCGCCTGCAGGGGGAGCACGCGCGGATGATTG
ATGTGGTATGTGAAGGAAGGGGGACGGGAGGACAACGAGGAGGTACCAAG
AGTGCTATGGCTGTGGACACCGGGAAGAAAGAGACAAAGAAGAAGGAGAC
GAAGAAAGAGCAGCAGCAGCAGCTGGAGGAGGAGGAGCAACCGAGGGAAA
CAGTGGTGGTTTGGGACGTCTTTGCAGGTGTTGGGCCTTTCTCCATCCCT
CTGGCCATGCGTGGATGTTACGTGTATGCGAATGATCTGAATGATCGGAG
CTATCACTACCTCTGTCAAAATGCCCGACAGAACAAGGTGGTCCTCCCTC
CTTTTCCCCCTCCTGCCTCCTCCTCCTCCTCTTCCTCCTCCTTCTCCTTC
TCCTCCGCAGCAACGACCACCACTCCTGCTGTTCCTGCCACTGCCGCTGC
AGTTACTGCAGGTTACCTCCACCCCAGTAACCAGGACGGACGGGCTTTCC
TTCGTTACCTCGCCTCGAAGAAAAGGCAAGTCAGCCACATAATAATGAAC
CTTCCTGCCACAGCCTATGAGTTTCTGGATGTTTTTGCTGAGGAGAAGGA
GGGGGAGATGGAGGATGGGAGGGAGGGAGGCTTAGACGGTGGGACGGAGC
TTTCTACCACTTCTGCGGAGGGGGAGGAGGAAGGGAGGGAAGGAGGGGGG
AAGAAGGAGCTGTTGTTCGGCTATTTGAAGGGGAAGGGTGTGATGGTCCA
TGTGTATATGTTTAGCAAGGCGGAGGATGCTGAGAGTGATGTAATTAAAC
GGGCGGCGGCTGTGATGGGGGTTAAGGTGGAGACGTTAGAGGAAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGTGGGTGTGTATCACGTCAGGGATGT
GGCGCCTAAGAAGAGGATGATCTGTTTGTCGTTTCCGTTGGATTTAGTGC
TGGGAGAGTGATGGAAGAATCGATAAGGAGAAAGAGGGGAGGGAGAGAAG
AAGCAGGAGGAGGAGGAAGAGGAGGAGGACAACTGTTAGGCGTCACAAAA
TTAAACCAAAGCACTTCAAGGAGCAAGGAAAGAGGTCCAGCCAATTGCAC
GCTTTCCCTTCTAC
back to top

protein sequence of NO17G00460.1

>NO17G00460.1-protein ID=NO17G00460.1-protein|Name=NO17G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=646bp
MMKVSAILPRALTLCALWGRGAASVLLPRRRRSCHPSSSLHFVLRHIPPT
STRPLSMVHFKSSCISCSRITAASCSTTRQFSSPPPDLSTPPPPQLLDRS
LFDEIRYLQALRLPASDCHKAIQCLAPYLFRTTGQRSVVLPGECKLNLSP
PLGPDERLLLFSFPSTEQHDNDEDSRCTTAMTKEQLKEGQHRLTDLLQSL
PSAYLLPSPGYPVQLTYADLSLHQALRRLLPPSLAVPSSFETVGHLAHLN
LRPEALPYKHQIAQVILDKNPKRIKTVVNKIGEIENTFRVLPLEVIGGEA
EGEGGREGGTLVKVKESGAWFAFDFREVYWNSRLQGEHARMIDVVCEGRG
TGGQRGGTKSAMAVDTGKKETKKKETKKEQQQQLEEEEQPRETVVVWDVF
AGVGPFSIPLAMRGCYVYANDLNDRSYHYLCQNARQNKVVLPPFPPPASS
SSSSSSFSFSSAATTTTPAVPATAAAVTAGYLHPSNQDGRAFLRYLASKK
RQVSHIIMNLPATAYEFLDVFAEEKEGEMEDGREGGLDGGTELSTTSAEG
EEEGREGGGKKELLFGYLKGKGVMVHVYMFSKAEDAESDVIKRAAAVMGV
KVETLEEGREGGREGGRVGVYHVRDVAPKKRMICLSFPLDLVLGE*
back to top
Synonyms
Publications