NO17G00370.1, NO17G00370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00370.1
Unique NameNO17G00370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2243
Alignment locationchr17:134438..137375 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:134438..137375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G00370.1 vs.
Match: EWM21189.1 (hypothetical protein Naga_100987g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 192.6 bits (488), Expect = 3.400e-45
Identity = 132/272 (48.53%), Postives = 155/272 (56.99%), Query Frame = 0 
Query:    4 STAGVRGARRGINPFLVLKCFAAFGVVQLLVFIKVFWTFADNYY--TGASHGEGGGGEGGIRAGWLDGGLRRGGHGKQAYEMLSADAREGEGFLAVGDGSGKEKAPSFHPHRPL-VPSPRPDDGRAAAAAPEGAAGAAPIDTEAVTKTTEYRVAMLLPFMGPAFPTWFRTFASSLADRADGSVPLDWYLFHEGARTPLGFTPPPNVRLIDLRPEGGLARRIVRKGRGVLFPSNEPEGGREEAGEGGDFDEDAAVGVLEEALQMTPALLIQFK 273
            ++  V  ARRG + FL    FAAF   QL +  KVF  F D     T  +  E  G E G + G      R    GK+ YE LS       G +  G        P      PL +PSP PD+ RA                   T   +YRVAMLLPF+GP FP+WFRTFA+SLA R DGSVP+DW++FHEGAR PLG+ PP NV LIDLRPEGGLARRIVR+GRGVLF    PE GRE+  E G FDE+ AV +L E L+  PALLIQFK
Sbjct:    2 ASGSVSHARRGFSRFLWPLGFAAFWAAQLYLSWKVFSAFTDKDAPSTLLAVPESYGEESGRKMGMWADRTRLWNQGKR-YEALSLS-----GDMLRGQNLPTRAVP------PLPIPSPGPDESRAQ------------------TGKKKYRVAMLLPFIGPIFPSWFRTFAASLAARDDGSVPMDWFIFHEGARVPLGYHPPTNVHLIDLRPEGGLARRIVRRGRGVLF----PESGREQGKEKG-FDEEEAVAILREGLKRKPALLIQFK 238
The following BLAST results are available for this feature:
BLAST of NO17G00370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21189.13.400e-4548.53hypothetical protein Naga_100987g2, partial [Nanno... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00370NO17G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00370.1NO17G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00370.1.cds1NO17G00370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00370.1.cds2NO17G00370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00370.1.cds3NO17G00370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00370.1.cds4NO17G00370.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00370.1 ID=NO17G00370.1|Name=NO17G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2243bp
GGGAAAGATGTGAAGACGACGAGTATGAGTGGGTAGTAGAGAGAGGGGGT
GAGGAGGTCGACGTTGGATATTTTAGGGAGTCAAACACCAGAAAGCGCTT
GGAGGGAAAGCCCTAGTACAACTGACCGATGTCGTGGAAGAATCTAGTTT
TATCTTTGCATGTGTGTTTGCGGATATGTGTGCGCGTTCAAGAGAACCAC
GCAAATCTAGCCTTTGCCCGTCGATGACCTCTCCTCCAGCCACCCTTCCT
GCTGCGGCGGGCTCGGCCCACTTTACTTGACCGGTCGCCAACTTGGTTTT
TAGGTTACAATTTCGCACCCCTGGGTGTGGGCCATCACCGTCCTAACCAC
CCAGCGCACACAACACGGCGCTTCCCAACGACTCTTGTTGTTCATCTTCG
TAGACCTCGACCAGGAGTCCGACCGCGGGGCTGGAAGCTTGAAAAATACA
CTCTCAGAATCGTCGGCACCTATAAAGTATTTTTTAAAAGTCCTGGACAC
GGGGCCGGCCCGATGGGGCGGAGCACGGCGGGCGTGCGAGGAGCCCGCAG
GGGTATTAATCCATTCCTTGTGCTCAAATGCTTTGCGGCCTTTGGCGTGG
TACAGCTCTTGGTGTTCATCAAAGTTTTTTGGACTTTTGCAGATAATTAT
TATACCGGTGCATCACATGGAGAAGGAGGAGGAGGAGAAGGGGGCATTAG
AGCAGGGTGGTTGGACGGGGGACTGAGGAGGGGAGGGCATGGCAAGCAAG
CATACGAAATGTTGTCAGCTGATGCTAGGGAAGGAGAAGGCTTTTTGGCA
GTAGGGGATGGCAGTGGTAAAGAGAAGGCACCGAGTTTCCACCCTCATCG
TCCTCTTGTTCCCAGCCCCCGACCCGATGATGGAAGAGCAGCAGCAGCAG
CACCAGAGGGAGCAGCAGGTGCAGCCCCAATAGACACAGAAGCAGTAACA
AAAACAACAGAATATAGAGTGGCCATGCTCCTCCCATTCATGGGCCCTGC
ATTTCCAACATGGTTTCGAACCTTCGCATCGTCCTTGGCAGACAGGGCGG
ATGGGAGTGTGCCTCTCGACTGGTATCTCTTCCACGAGGGCGCGCGCACT
CCCCTGGGTTTCACTCCGCCTCCCAACGTTCGTTTAATCGACCTGAGACC
GGAGGGAGGGCTGGCAAGACGCATCGTGAGAAAAGGCCGAGGAGTTCTAT
TTCCGAGCAATGAGCCCGAGGGAGGGAGGGAGGAAGCGGGGGAGGGAGGG
GACTTCGATGAAGATGCAGCGGTGGGGGTGCTGGAGGAGGCCTTGCAAAT
GACGCCGGCGCTGTTGATCCAGTTCAAGCCCGCCCTCGGCCTCCTCTTCG
CAGACCACCTCCTCCCTTCCCACACCCACTGGGGCTACGCCGACCTGGAT
ATTCTCGTCGGTCGGATTTTCGCCCCTCCGTCGCCTTCCCCCCCTCCTTC
CTTCACCCTGACGCCCCTCGAGCTCAGCCGCCATCACATCCTTACCTTGT
CGTTCGGAGACCAATTTAGGGGGTATGTGCGAGGGCAGTTCACCCTTCAT
GCTCGCCCTCTCTCCCTCCCTGCCTCCCTCCTCCTCGCCGGCTGCCCCTC
TTTCCTCCCTCCTTCCCACCCTTCCTCCCCCGACAACCACCACCCCCCCG
AGGCACAATTTTTCTTTGAGTCGATCCGGAAGGGACGTTTGGCCCAGGCC
TCTGCTGAAGGCTGCTACAGCTACTCCCTCCTCTCTCTCGTCCTCCCTCC
CTCCCTCCCGCTCCCTCCCTCCCTCCCTCCCCTCCCTTTGTCGATAAAAT
ACGCCTTGGGAGCGTTTTCGGATGCATCCGACCGAGCGCATGACTTGAGG
GGCATGGATGACGGCGGAAAGGAGGATGTGGTGGACGGGGGGAGGTTCCA
CGAGGCGTTGCTGTTGCGGGATGGGAGGGTGCTGCGATGCGAGGGGAAAG
GGAAAAGCATTACCTCCTGCTTTGCCTCGCTCAACCAAGTAGAGGAGGGC
AAGAGGAAGAAACGGAAGGAGAAAGGGAACGAGGGAGGGGTGACACTGGT
GCCAGTAGAGAGGGAGGAGGAAGGGAAGGAATGCATGTGGTGGGTCCCCA
GAGCCTTCCAAGTCTGCCTCAAAAACACAACGGCTCGTGACGCCATCTAC
TTTGTCAACGGCTCTTTCTTCAAGTCTACCAGGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAAGGCGGGGGGAGGTAG
back to top

protein sequence of NO17G00370.1

>NO17G00370.1-protein ID=NO17G00370.1-protein|Name=NO17G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=577bp
MGRSTAGVRGARRGINPFLVLKCFAAFGVVQLLVFIKVFWTFADNYYTGA
SHGEGGGGEGGIRAGWLDGGLRRGGHGKQAYEMLSADAREGEGFLAVGDG
SGKEKAPSFHPHRPLVPSPRPDDGRAAAAAPEGAAGAAPIDTEAVTKTTE
YRVAMLLPFMGPAFPTWFRTFASSLADRADGSVPLDWYLFHEGARTPLGF
TPPPNVRLIDLRPEGGLARRIVRKGRGVLFPSNEPEGGREEAGEGGDFDE
DAAVGVLEEALQMTPALLIQFKPALGLLFADHLLPSHTHWGYADLDILVG
RIFAPPSPSPPPSFTLTPLELSRHHILTLSFGDQFRGYVRGQFTLHARPL
SLPASLLLAGCPSFLPPSHPSSPDNHHPPEAQFFFESIRKGRLAQASAEG
CYSYSLLSLVLPPSLPLPPSLPPLPLSIKYALGAFSDASDRAHDLRGMDD
GGKEDVVDGGRFHEALLLRDGRVLRCEGKGKSITSCFASLNQVEEGKRKK
RKEKGNEGGVTLVPVEREEEGKECMWWVPRAFQVCLKNTTARDAIYFVNG
SFFKSTREEEEEEEEEEEEEEEGGGR*
back to top

mRNA from alignment at chr17:134438..137375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00370.1 ID=NO17G00370.1|Name=NO17G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2938bp|location=Sequence derived from alignment at chr17:134438..137375+ (Nannochloropsis oceanica)
GGGAAAGATGTGAAGACGACGAGTATGAGTGGGTAGTAGAGAGAGGGGGT
GAGGAGGTCGACGTTGGATATTTTAGGGAGTCAAACACCAGAAAGCGCTT
GGAGGGAAAGCCCTAGTACAACTGACCGATGTCGTGGAAGAATCTAGTTT
TATCTTTGCATGTGTGTTTGCGGATATGTGTGCGCGTTCAAGAGAACCAC
GCAAATCTAGCCTTTGCCCGTCGATGACCTCTCCTCCAGCCACCCTTCCT
GCTGCGGCGGGCTCGGCCCACTTTACTTGACCGGTCGCCAACTTGGTTTT
TAGGTTACAATTTCGCACCCCTGGGTGTGGGCCATCACCGTCCTAACCAC
CCAGCGCACACAACACGGCGCTTCCCAACGACTCTTGTTGTTCATCTTCG
TAGACCTCGACCAGGAGTCCGACCGCGGGGCTGGAAGCTTGAAAAATACA
CTCTCAGAATCGTCGGTTAGTCAAGCACGCGCTCACCCCCCGCCTCGCCA
CTGTTCTGTCTTTACGTACGCGTCCCATGCCTCCCCCTTCTCATCCCTCC
CCCGTCCACCCTCCTGTCACAGGCACCTATAAAGTATTTTTTAAAAGTCC
TGGACACGGGGCCGGCCCGATGGGGCGGAGCACGGCGGGCGTGCGAGGAG
CCCGCAGGGGTATTAATCCATTCCTTGTGCTCAAATGCTTTGCGGCCTTT
GGCGTGGTACAGCTCTTGGTGTTCATCAAAGTTTTTTGGACTTTTGCAGA
TAATTATTATACCGGTGCATCACATGGAGAAGGAGGAGGAGGAGAAGGGG
GCATTAGAGCAGGGTGGTTGGACGGGGGACTGAGGAGGGGAGGGCATGGC
AAGCAAGCATACGAAATGTTGTCAGCTGATGCTAGGTGAGTACTGAGGAA
GGAAGGACGAGGAGGGGAAGGAGAACGAGACACTGCATATCTTCATGAGG
TCAGACTTGTTCATGGAATTTTGCATCCTCTGGCTTGTTCTCATGCATGC
AGGCAATGGAGTGGACAGAGGGGAGGGAGGGAGAGCTCTACGTCGGCAGG
CGTCTAATTCCCGTGACTAGACGTCTTAGTTTAAATATACCTTCTCACAC
GCATGACGCAGGGAAGGAGAAGGCTTTTTGGCAGTAGGGGATGGCAGTGG
TAAAGAGAAGGCACCGAGTTTCCACCCTCATCGTCCTCTTGTTCCCAGCC
CCCGACCCGATGATGGAAGAGCAGCAGCAGCAGCACCAGAGGGAGCAGCA
GGTGCAGCCCCAATAGACACAGAAGCAGTAACAAAAACAACAGAATATAG
AGTGGCCATGCTCCTCCCATTCATGGGCCCTGCATTTCCAACATGGTTTC
GAACCTTCGCATCGTCCTTGGCAGACAGGGCGGATGGGAGTGTGCCTCTC
GACTGGTATCTCTTCCACGAGGGCGCGCGGTAAGGAGGGAAGAAGAGAGA
GAGAGGGGGTAGGTTCAAGTCAATGTATCCTACTAGGCAAGGCCTATTTT
TCCTTCTCTCACTCATAAGTCCTACCCTCCTTCCCACCCTTTTGCTGTTC
CTCCCTCCTTTTCTCCCTCCATTCCCGCAACACCTCAGCCTACATCCCTG
CCCCTTCCCTCTCTTCCTCCTCGCCTCCCTTACCTTCCCACAGCACTCCC
CTGGGTTTCACTCCGCCTCCCAACGTTCGTTTAATCGACCTGAGACCGGA
GGGAGGGCTGGCAAGACGCATCGTGAGAAAAGGCCGAGGAGTTCTATTTC
CGAGCAATGAGCCCGAGGGAGGGAGGGAGGAAGCGGGGGAGGGAGGGGAC
TTCGATGAAGATGCAGCGGTGGGGGTGCTGGAGGAGGCCTTGCAAATGAC
GCCGGCGCTGTTGATCCAGTTCAAGGTGCGAAGGGAGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGCATTCTAGCGCATGTTTTCGTTTCACATTC
ATGACATTCATCCTTCCTACCTTCTTTCCTTACCTCCCCTCCTCCCTTTT
TCATGTGTCCTCCCGCTCTCCAGCCCGCCCTCGGCCTCCTCTTCGCAGAC
CACCTCCTCCCTTCCCACACCCACTGGGGCTACGCCGACCTGGATATTCT
CGTCGGTCGGATTTTCGCCCCTCCGTCGCCTTCCCCCCCTCCTTCCTTCA
CCCTGACGCCCCTCGAGCTCAGCCGCCATCACATCCTTACCTTGTCGTTC
GGAGACCAATTTAGGGGGTATGTGCGAGGGCAGTTCACCCTTCATGCTCG
CCCTCTCTCCCTCCCTGCCTCCCTCCTCCTCGCCGGCTGCCCCTCTTTCC
TCCCTCCTTCCCACCCTTCCTCCCCCGACAACCACCACCCCCCCGAGGCA
CAATTTTTCTTTGAGTCGATCCGGAAGGGACGTTTGGCCCAGGCCTCTGC
TGAAGGCTGCTACAGCTACTCCCTCCTCTCTCTCGTCCTCCCTCCCTCCC
TCCCGCTCCCTCCCTCCCTCCCTCCCCTCCCTTTGTCGATAAAATACGCC
TTGGGAGCGTTTTCGGATGCATCCGACCGAGCGCATGACTTGAGGGGCAT
GGATGACGGCGGAAAGGAGGATGTGGTGGACGGGGGGAGGTTCCACGAGG
CGTTGCTGTTGCGGGATGGGAGGGTGCTGCGATGCGAGGGGAAAGGGAAA
AGCATTACCTCCTGCTTTGCCTCGCTCAACCAAGTAGAGGAGGGCAAGAG
GAAGAAACGGAAGGAGAAAGGGAACGAGGGAGGGGTGACACTGGTGCCAG
TAGAGAGGGAGGAGGAAGGGAAGGAATGCATGTGGTGGGTCCCCAGAGCC
TTCCAAGTCTGCCTCAAAAACACAACGGCTCGTGACGCCATCTACTTTGT
CAACGGCTCTTTCTTCAAGTCTACCAGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAAGGCGGGGGGAGGTAG
back to top

Coding sequence (CDS) from alignment at chr17:134438..137375+

>NO17G00370.1 ID=NO17G00370.1|Name=NO17G00370.1|organism=Nannochloropsis oceanica|type=CDS|length=1731bp|location=Sequence derived from alignment at chr17:134438..137375+ (Nannochloropsis oceanica)
ATGGGGCGGAGCACGGCGGGCGTGCGAGGAGCCCGCAGGGGTATTAATCC
ATTCCTTGTGCTCAAATGCTTTGCGGCCTTTGGCGTGGTACAGCTCTTGG
TGTTCATCAAAGTTTTTTGGACTTTTGCAGATAATTATTATACCGGTGCA
TCACATGGAGAAGGAGGAGGAGGAGAAGGGGGCATTAGAGCAGGGTGGTT
GGACGGGGGACTGAGGAGGGGAGGGCATGGCAAGCAAGCATACGAAATGT
TGTCAGCTGATGCTAGGGAAGGAGAAGGCTTTTTGGCAGTAGGGGATGGC
AGTGGTAAAGAGAAGGCACCGAGTTTCCACCCTCATCGTCCTCTTGTTCC
CAGCCCCCGACCCGATGATGGAAGAGCAGCAGCAGCAGCACCAGAGGGAG
CAGCAGGTGCAGCCCCAATAGACACAGAAGCAGTAACAAAAACAACAGAA
TATAGAGTGGCCATGCTCCTCCCATTCATGGGCCCTGCATTTCCAACATG
GTTTCGAACCTTCGCATCGTCCTTGGCAGACAGGGCGGATGGGAGTGTGC
CTCTCGACTGGTATCTCTTCCACGAGGGCGCGCGCACTCCCCTGGGTTTC
ACTCCGCCTCCCAACGTTCGTTTAATCGACCTGAGACCGGAGGGAGGGCT
GGCAAGACGCATCGTGAGAAAAGGCCGAGGAGTTCTATTTCCGAGCAATG
AGCCCGAGGGAGGGAGGGAGGAAGCGGGGGAGGGAGGGGACTTCGATGAA
GATGCAGCGGTGGGGGTGCTGGAGGAGGCCTTGCAAATGACGCCGGCGCT
GTTGATCCAGTTCAAGCCCGCCCTCGGCCTCCTCTTCGCAGACCACCTCC
TCCCTTCCCACACCCACTGGGGCTACGCCGACCTGGATATTCTCGTCGGT
CGGATTTTCGCCCCTCCGTCGCCTTCCCCCCCTCCTTCCTTCACCCTGAC
GCCCCTCGAGCTCAGCCGCCATCACATCCTTACCTTGTCGTTCGGAGACC
AATTTAGGGGGTATGTGCGAGGGCAGTTCACCCTTCATGCTCGCCCTCTC
TCCCTCCCTGCCTCCCTCCTCCTCGCCGGCTGCCCCTCTTTCCTCCCTCC
TTCCCACCCTTCCTCCCCCGACAACCACCACCCCCCCGAGGCACAATTTT
TCTTTGAGTCGATCCGGAAGGGACGTTTGGCCCAGGCCTCTGCTGAAGGC
TGCTACAGCTACTCCCTCCTCTCTCTCGTCCTCCCTCCCTCCCTCCCGCT
CCCTCCCTCCCTCCCTCCCCTCCCTTTGTCGATAAAATACGCCTTGGGAG
CGTTTTCGGATGCATCCGACCGAGCGCATGACTTGAGGGGCATGGATGAC
GGCGGAAAGGAGGATGTGGTGGACGGGGGGAGGTTCCACGAGGCGTTGCT
GTTGCGGGATGGGAGGGTGCTGCGATGCGAGGGGAAAGGGAAAAGCATTA
CCTCCTGCTTTGCCTCGCTCAACCAAGTAGAGGAGGGCAAGAGGAAGAAA
CGGAAGGAGAAAGGGAACGAGGGAGGGGTGACACTGGTGCCAGTAGAGAG
GGAGGAGGAAGGGAAGGAATGCATGTGGTGGGTCCCCAGAGCCTTCCAAG
TCTGCCTCAAAAACACAACGGCTCGTGACGCCATCTACTTTGTCAACGGC
TCTTTCTTCAAGTCTACCAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAAGGCGGGGGGAGGTAG
back to top
Synonyms
Publications