NO17G00200, NO17G00200 (gene) Nannochloropsis oceanica

Overview
NameNO17G00200
Unique NameNO17G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1151
Alignment locationchr17:69042..70192 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:69042..70192 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013930RNA_pol_II_AP1_N
Homology
The following BLAST results are available for this feature:
BLAST of NO17G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR005ncniR005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00200.1NO17G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634506gene_11194Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00200.1NO17G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00200 ID=NO17G00200|Name=NO17G00200|organism=Nannochloropsis oceanica|type=gene|length=1151bp
ATGCAGCACCTGGAGGAAGACGGCGAGTTAGCCCGGATGCTTGCCGAACA
GGAAGCGTTCCTAGCGTCCCAAGAAGCACCGGCCGCAAAAGTAGTGCGGC
GGCAGGAGGGCGACAATGgtacgtatggggagaggcattaaaggcgtcgg
aatatgaacagggtggcggcagggtgggttaaaaaacaacggctcgatgc
gcaaaccacaggctttcccaatttaacgtgactacctccctaacatcatc
gcgcagGAACTGAAGCAGCAGCAGCGGCCTCCAACCAGCCACTGCAGCAG
CAGCAGCCAGCAGCACCACTATTGTCAGAGCCCTCAGAGCCCTCATTGCC
AGTTTTGATCGGCTCAGTGGTGGAAAAGACGGGGAAAGgtattgctttga
aggaggggccgaagggggcgaaggggagggggggactggaggcgacgcgc
accttctgacgtttttaccagccgtgtcaatgctcacaagcctctcattt
cgatttcttcaatttctaattttcagTGACTTGCCTGCCGTTGCCATTAA
AGATTGGAGGAGGTGTGCGTGGCTTCCCTAAGGCATTGCCACGAAAGGAG
ACGGCACCAGGACCTGCTCCAGGAGGGAGGGAGAGAGGCATGGGTCCCAC
TAAAAGCATGGCACCACCAGCATCATATATTACGTCTGACACGAGGAATG
CGAATAAAAGCGAAGTAGGGGAGGGCAAGGAGGAGGAGGAGGAAGTGGAG
GAGAAGGAAGTAGAGGGGTTGGAGGGGGAGAGGGCACGTATGGAGgtagg
tctctctctgctcttgtcgttccaattaaatcacacggaaggaaatgccc
tctcttggaccttccctttcatttgtctttcaccttagctgcctatgtta
tttaatttaagatgtataaatgcggagtagtgatcaatatcaaagaagag
gcagcgtcccctcgctctgccacgccatgacccatcccttcctccctccc
ttccttcctccctccctccctccagGCTCAGAATCTGGCACGTCTTTCTC
GCATGACTCCCGATCAAGTCGAGGCCGCGACTCGCGAGGCTTTGTCGATC
CTCTCGCCTGCTGCCATCGAATTGCTGAGACGGCGGGGACAGGAAAGGTA
G
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protein sequence of NO17G00200.1

>NO17G00200.1-protein ID=NO17G00200.1-protein|Name=NO17G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MQHLEEDGELARMLAEQEAFLASQEAPAAKVVRRQEGDNGTEAAAAASNQ
PLQQQQPAAPLLSEPSEPSLPVLIGSVVEKTGKVTCLPLPLKIGGGVRGF
PKALPRKETAPGPAPGGRERGMGPTKSMAPPASYITSDTRNANKSEVGEG
KEEEEEVEEKEVEGLEGERARMEAQNLARLSRMTPDQVEAATREALSILS
PAAIELLRRRGQER*
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Synonyms
Publications