NO16G03000.1, NO16G03000.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G03000.1
Unique Name	NO16G03000.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1124
Alignment location	chr16:878292..880387 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:878292..880387 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO16G03000.1 vs.
Match: EWM23806.1 (Symplekin [Nannochloropsis gaditana])

HSP 1 Score: 184.5 bits (467), Expect = 5.500e-43
Identity = 90/120 (75.00%), Postives = 103/120 (85.83%), Query Frame = 0

Query:  222 MVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREIWTSQPRVWEGLIILPKYIGTREVTDKMSGALLAVPASLLQDLLKKNPDFRATLAAHVSRGRKTAGLDNAKRKVLGL 342
            MVE+K  PVPYAYMRSVILAIRAYP LK +VA+ +VPKLVEREIW++QPRVWEGLI+LPKYIGTRE+T+KM+ AL  +P SLLQDLLKKNPD R  LAA+ +R RK  GLD AKRKVLGL
Sbjct:    1 MVEEKSLPVPYAYMRSVILAIRAYPGLKPVVANTLVPKLVEREIWSTQPRVWEGLILLPKYIGTRELTEKMNEALFTLPTSLLQDLLKKNPDIRPILAAYATRSRKNVGLDVAKRKVLGL 120

The following BLAST results are available for this feature:

BLAST of NO16G03000.1 vs.

BLAST of NO16G03000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23806.1	5.500e-43	75.00	Symplekin [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G03000	NO16G03000	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G03000.1	NO16G03000.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G03000.1.cds1	NO16G03000.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G03000.1.cds2	NO16G03000.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G03000.1.cds3	NO16G03000.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G03000.1.cds4	NO16G03000.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G03000.1.cds5	NO16G03000.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G03000.1.cds6	NO16G03000.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:878292..880387-
coding sequence from alignment at chr16:878292..880387-

mRNA sequence

>NO16G03000.1 ID=NO16G03000.1|Name=NO16G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp
ATGGTGGGAGAGCTCTTCGATGTTTATGGCCGGGCGAAAGAGGGGGAGGG
AGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGTGTG
TTGGCCAGGGTCGTTGAGGATGAGATGGAGGAATTCGTCAAGCACGTGAT
TGCGCCTCATGGAGCAGGGGCCTCGCTCTCCGCTCTGGTGGGGGCTCCAC
CAGCTGCTTCCCCGCTCATCCTCCTCGTCCTCTCTATCCTTGTGCCGGAA
ACTCGCACCCGCCCGCCCCCTCCCGAGGTGGTGGTTGCCGCCAAGACCTT
GAAGGAGATACGCGGCGGCGATGTTTCCTATCTCCTCCCTGTCATCGGCG
GCCTATCCAAAGAGGATTTCGAGGCCGCCCTCCCCCCCCTCCTCGCCCAG
GACCTAGTGGATGCCAAGTTGCTAAAGAGATTGATAATCCCCGCGGGCCC
CCTGACAGCTGCTGAGGTCCTTGTCTCGCTCCACAACGTCGACCCAGAGG
CAGCGGCAGCCTCCGTGGACTTATCTCTCAGAAAGTACTTGGATACACTT
CAACAATGCCTCAACATGAAGACGCTCTTCCCGCAGACGGCCATGACCCT
CGCCCTGGTCAAGATGGTGGAGGACAAGGACCGTCCTGTCCCTTACGCCT
ATATGCGCAGCGTCATCCTAGCCATCCGCGCCTACCCTACCCTCAAGTCC
ATCGTCGCAGACAACATCGTACCGAAGCTCGTGGAGCGTGAGATCTGGAC
CTCGCAGCCTCGGGTCTGGGAGGGACTCATCATTCTGCCCAAGTACATTG
GCACGCGGGAAGTCACCGATAAGATGAGTGGTGCTCTCCTTGCAGTCCCT
GCCTCCCTCCTTCAAGACCTCTTAAAGAAGAATCCAGATTTTCGGGCGAC
GTTGGCAGCGCACGTCTCAAGGGGACGGAAGACGGCAGGGCTGGACAATG
CGAAGCGGAAGGTGTTGGGATTATGAGCGAGCACAGATAGGAGGAAATAA
ATAAAGAGAGGGAGTTGCGAAGGCGACAACATAAAAGCACAAGTAAAAAG
AAAAATATTGAGCTCAACACAACA

protein sequence of NO16G03000.1

>NO16G03000.1-protein ID=NO16G03000.1-protein|Name=NO16G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MVGELFDVYGRAKEGEGGKEGGREGGREEGGEGGREGGREGGREGGRESV
LARVVEDEMEEFVKHVIAPHGAGASLSALVGAPPAASPLILLVLSILVPE
TRTRPPPPEVVVAAKTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPLLAQ
DLVDAKLLKRLIIPAGPLTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTL
QQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKS
IVADNIVPKLVEREIWTSQPRVWEGLIILPKYIGTREVTDKMSGALLAVP
ASLLQDLLKKNPDFRATLAAHVSRGRKTAGLDNAKRKVLGL*

mRNA from alignment at chr16:878292..880387-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G03000.1 ID=NO16G03000.1|Name=NO16G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2096bp|location=Sequence derived from alignment at chr16:878292..880387- (Nannochloropsis oceanica)
ATGGTGGGAGAGCTCTTCGATGTTTATGGCCGGGCGAAAGAGGGGGAGGG
AGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGTGTG
TTGGCCAGGGTCGTTGAGGATGAGATGGAGGAATTCGTCAAGCACGTGAT
TGCGGTGGGTAGGAGGGAGGGAGGGAGGGAGAGGGAGGGAGGGAGGGAAG
GAGGGAGGGGGAGGGATAAAAAGCTTCTTGTACCGTTTCTTCTCCTGATT
AGACTTGCTCACGTCTCGGCCAGTCATTTGCTTCCTCCCACCTTCCCATC
CTATTCCCTTCCCCTCCCTTCTTCCCTCCCTTTCCAGCCTCATGGAGCAG
GGGCCTCGCTCTCCGCTCTGGTGGGGGCTCCACCAGCTGCTTCCCCGCTC
ATCCTCCTCGTCCTCTCTATCCTTGTGCCGGAAACTCGCACCCGCCCGCC
CCCTCCCGAGGTGGTGGTTGCCGCCAAGACCTTGAAGGAGATACGGTAGG
AAGGGAGGGAAGTAGGGAGGGAGGACGGGAGGGAAGGAGGAGAGAGAAAC
ACAGACGACGATTTTGCAACGTTCGTTTTAAAATATCACGGTTTCACTCA
CCGTCCTTCCTTCCTTCCCTGCCCCCCTCCCTACCTCTTACCCCCAGCGG
CGGCGATGTTTCCTATCTCCTCCCTGTCATCGGCGGCCTATCCAAAGAGG
ATTTCGAGGCCGCCCTCCCCCCCCTCCTCGCCCAGGACCTAGTGGATGCC
AAGTTGCTAAAGAGATTGATAAGTGAGTGTAGGGAGGGGAAGGGAGGGGA
TAAGGGACAATGGGAGAGAGAAAAAAGAGAGGGGCACAAATGCGACGATG
GAAGAAAGAACGTACTGATTACACTGCCCCCTCCCTTTTTCTTCTCTTCC
CTCCCTCTTTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCACTCCCT
CCCTCCTTCCCTCCCTCACTCCCTCCCTCACTCCCTCTCTAGTCCCCGCG
GGCCCCCTGACAGCTGCTGAGGTCCTTGTCTCGCTCCACAACGTCGACCC
AGAGGCAGCGGCAGCCTCCGTGGACTTATCTCTCAGAAAGTACTTGGATA
CACTTCAACAATGCCTCAACATGAAGACGCTCTTCCCGCAGACGGCCATG
AGTGAGTGAAGTGAAAGGGAGGGAGAGAGGGAGGTGGGGAGTCGCTACTC
AGAAATGACTCAGGACTGTTGTCTCTCCGCTCCAACCTGTCATCGATCTT
ATTTTCCACGAATCATGCGCCTTTCCTACCCCTTCTCCTACCCCTTCATC
CTCCAGCCCTCGCCCTGGTCAAGATGGTGGAGGACAAGGACCGTCCTGTC
CCTTACGCCTATATGCGCAGCGTCATCCTAGCCATCCGCGCCTACCCTAC
CCTCAAGTCCATCGTCGCAGACAACATCGTACCGAAGCTCGTGGAGCGTG
AGGTGGGTATTTAATGTGATCTTCACTCGCTCCTTCCTCTCCTTTCCTTC
CCCTCTCTCTCCCCCTTTGGCCAGTTCGCGCCCTTTTTCCCCTTGTGGCG
ATCATCGCCAACACCATCACCCAGGAGCTCGTACAGTGAGAGACGAATGT
ATGGGTGCTACCATACTCTCTCTCCTTTTCGCTCTCATCTCCTCCTTTCT
CTTTCACATTATCATCCCTTTGACACCACTCCATCTAAATTCTCGCCGTC
TTCCCTCTCGTTAGATCTGGACCTCGCAGCCTCGGGTCTGGGAGGGACTC
ATCATTCTGCCCAAGTACATTGGCACGCGGGAAGTCACCGATAAGATGAG
TGGTGCTCTCCTTGCAGTCCCTGCCTCCCTCCTTCAAGACCTCTTAAAGA
AGAATCCAGATTTTCGGGCGACGTTGGCAGCGCACGTCTCAAGGGGACGG
AAGACGGCAGGGCTGGACAATGCGAAGCGGAAGGTGTTGGGATTATGAGC
GAGCACAGATAGGAGGAAATAAATAAAGAGAGGGAGTTGCGAAGGCGACA
ACATAAAAGCACAAGTAAAAAGAAAAATATTGAGCTCAACACAACA

Coding sequence (CDS) from alignment at chr16:878292..880387-

>NO16G03000.1 ID=NO16G03000.1|Name=NO16G03000.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr16:878292..880387- (Nannochloropsis oceanica)
ATGGTGGGAGAGCTCTTCGATGTTTATGGCCGGGCGAAAGAGGGGGAGGG
AGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGTGTG
TTGGCCAGGGTCGTTGAGGATGAGATGGAGGAATTCGTCAAGCACGTGAT
TGCGCCTCATGGAGCAGGGGCCTCGCTCTCCGCTCTGGTGGGGGCTCCAC
CAGCTGCTTCCCCGCTCATCCTCCTCGTCCTCTCTATCCTTGTGCCGGAA
ACTCGCACCCGCCCGCCCCCTCCCGAGGTGGTGGTTGCCGCCAAGACCTT
GAAGGAGATACGCGGCGGCGATGTTTCCTATCTCCTCCCTGTCATCGGCG
GCCTATCCAAAGAGGATTTCGAGGCCGCCCTCCCCCCCCTCCTCGCCCAG
GACCTAGTGGATGCCAAGTTGCTAAAGAGATTGATAATCCCCGCGGGCCC
CCTGACAGCTGCTGAGGTCCTTGTCTCGCTCCACAACGTCGACCCAGAGG
CAGCGGCAGCCTCCGTGGACTTATCTCTCAGAAAGTACTTGGATACACTT
CAACAATGCCTCAACATGAAGACGCTCTTCCCGCAGACGGCCATGACCCT
CGCCCTGGTCAAGATGGTGGAGGACAAGGACCGTCCTGTCCCTTACGCCT
ATATGCGCAGCGTCATCCTAGCCATCCGCGCCTACCCTACCCTCAAGTCC
ATCGTCGCAGACAACATCGTACCGAAGCTCGTGGAGCGTGAGATCTGGAC
CTCGCAGCCTCGGGTCTGGGAGGGACTCATCATTCTGCCCAAGTACATTG
GCACGCGGGAAGTCACCGATAAGATGAGTGGTGCTCTCCTTGCAGTCCCT
GCCTCCCTCCTTCAAGACCTCTTAAAGAAGAATCCAGATTTTCGGGCGAC
GTTGGCAGCGCACGTCTCAAGGGGACGGAAGACGGCAGGGCTGGACAATG
CGAAGCGGAAGGTGTTGGGATTATGA

Synonyms

Publications