NO16G02900, NO16G02900 (gene) Nannochloropsis oceanica

Overview
NameNO16G02900
Unique NameNO16G02900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3820
Alignment locationchr16:840032..843851 +

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat-containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:840032..843851 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
Homology
[Close]
BLAST of NO16G02900 vs. NCBI_GenBank
Match: EWM23818.1 (pentatricopeptide repeat-containing protein chloroplastic, partial [Nannochloropsis gaditana])

HSP 1 Score: 345.5 bits (885), Expect = 5.400e-91
Identity = 346/413 (83.78%), Postives = 371/413 (89.83%), Query Frame = 0 
Query:  577 RGIVLDMKSYNALLPAVLAEAPAFLQQEAVDTFLKDLSRRGLSPDRVTFNTILKHHASLGKEALALETLRTMSKTAGVAPDVVSYTTAISACGRDWDGALRVLAQAEGDGNIEKDARLYTAAMRVCASAGKRQEVLDLFERMKAMQAAQTEKGEGKRRKLGGKGESENDLLSMYIAYNAVLEALKMEGDWRQALKVLQDMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRGFPRDVRAFTAVIRAYGRAGLWREALELLGTMKARNVKPTVVSYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGRLDKIVQLQWKRLT 990
            RGIVLD+KSYNALLPAVLAEAP FLQQEAV+TFL DLSRRG +PDRVTFNTILKHHAS+GKEALALETLR M   AG+ PDVVS+TT I+ACGRDWDGA+RVLAQAE +  +EKDAR+YTAAMRVCA+AG+R+EVL+LFERMKAMQA Q ++  GK RK  G+GESE D LS+ IAYNAVLEALK + +WRQAL+VLQ+MR       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRGFPRDVRAF AVIRAYGRAGLWREALELLGTMKARNVKPT     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     DK+VQLQWK+LT
Sbjct:   13 RGIVLDVKSYNALLPAVLAEAPPFLQQEAVETFLGDLSRRGFAPDRVTFNTILKHHASMGKEALALETLRMMKDQAGIVPDVVSFTTVITACGRDWDGAMRVLAQAEQESGVEKDARMYTAAMRVCANAGRRREVLELFERMKAMQATQEKRKGGKERK--GEGESEEDRLSVLIAYNAVLEALKTDKEWRQALQVLQEMRRVGLVPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRGFPRDVRAFXAVIRAYGRAGLWREALELLGTMKARNVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKVVQLQWKKLT 423
[Close]
BLAST of NO16G02900 vs. NCBI_GenBank
Match: EWM23822.1 (hypothetical protein Naga_100623g1 [Nannochloropsis gaditana])

HSP 1 Score: 210.7 bits (535), Expect = 2.100e-50
Identity = 118/177 (66.67%), Postives = 134/177 (75.71%), Query Frame = 0 
Query:  401 VEAFITSLPLTPNSPRTRNGQVAGISPRPKAPKGSSLPSSSLSTAFPPVSAKHPSQRRPNTTYLSSSPSPFALAKSTKKMYISRRGEITTPGTGNGSAFALASLLSLKDGSTVTPAELRGVVNGCLRRQDWKGLRQLAGSDNGLPVTKDLLDMMVTVTAKAGKSRTARALVDLMILR 578
            VEAFITSLP  P SP+TRNG++AG+SPRP                            R N T+L++S SPFA A+S+KKM+ISRRGEIT P TG GSA  LA+LL+LKDGS VTPAEL+ VVNGC RRQDWKGLRQLAGSDNGLP++KDLLDMMVTVTAKAGKSRTARAL+DLMILR
Sbjct:  435 VEAFITSLP-NPASPKTRNGRLAGVSPRP--------------XXXXXXXXXXXXXXRGNATFLAASSSPFASARSSKKMFISRRGEITIPNTGPGSARGLAALLALKDGSGVTPAELKSVVNGCFRRQDWKGLRQLAGSDNGLPLSKDLLDMMVTVTAKAGKSRTARALMDLMILR 596
The following BLAST results are available for this feature:
BLAST of NO16G02900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23818.15.400e-9183.78pentatricopeptide repeat-containing protein chloro... [more]
EWM23822.12.100e-5066.67hypothetical protein Naga_100623g1 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02900.1NO16G02900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594066gene_6186Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100623g1gene6640Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02900.1NO16G02900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02900 ID=NO16G02900|Name=NO16G02900|organism=Nannochloropsis oceanica|type=gene|length=3820bp
CAGGCAGCACTTCACCACTCACCCGGGTTTCGACCCACACATACGCACAC
GTATTTCAAGAAGCGAGCGATCCTTTGTTACCTGCTGCCCCCTTTCCAGC
CTCAACCGTGTTACCGAAGCCTTCCCAAAGCATGCCACCACCACGCAGCT
TCCCTGGCCTGGCTGCCTTGTTCCTTTTGGTCGTGACCGCGCATGCTTTC
TTCCCCTTTCAACTGCCTGCCGGTCCCAGGAGATCGCCCCCTGCAGCCAG
CCCCAGCGCAGCTACCACGGCCTTCTCAAGAATACGAGCAGCGACTGGAA
CCTTGGAAAAAGGCGCATTTGGTCGCTTTTCCTCCTCTTTATTGCGCCCC
TTTCTGTCCAGCAGCGCCAAGGCTTCTATGGCCGATGCTGCCGCCGCGTC
CGTGGCCGCCGCAGCAGCATCATCAACAGAGGCCCCTAAAAAGAAAACTC
GGCGGGGACCACACAAGCCCAAGACGAACAGCACCAGCACTGTAGCCGCG
GCAAACATAGTTTCAGCAGCAGCAGCTGGAACATCAAAGAAGGGAAAAAC
CCAAAAACCTCAGAGCAAGGCGAACGCCGCTCTAGTGACGGCAGCAGGAG
AAATAAAGAAGCTCGTCTCTGCTACTGCGGCCGCCGATGGTGTTATCCTT
GCCCCCGGGGAGAAACGAGGTCCTCATCAGCCGCGCCCGAAACGAACGCC
TCTCCCTCCGAAACAAAAAAAGCAGCAGAAGCCAGCAGCAGCAGCTACAG
CTACAGCTACCTCAGCAAAGGTGAAGGACGAGGTCATCCTCCTCATGACC
GGGCCCAAGCTGTTGCGGCGCAATTTCACATCAGATGCCGCTCCTCTCCC
TCCCTCTTCCACCTACTCCACGAAGGCGCTGAAGCGACAGCAGAACATGG
CCGCCCTCCAGGGAGCCATCAAGGAGGAAAAGGATGGGGGCAACGTGCAG
GGGAAAGTCGTCTTCAAACGCGAACTCCCAGCAGTGGCCCGTTTGCCGGA
CGTGGATTCGGTGGAGGTACGACGGAAGCAACAGCTGCTGAAGCAAAAAG
AGGAAGAGGCAGCAGCAGCACTGGCAGCCGTGCCCCTCCCTGACCCGGCG
CTAAAATCAGAGACGCCCAAGCAGTCGCAGCACAAGAAAAAGAAGGAGGC
GGCTAAATCCACTGCTGAGGCTTCTCGTGCTCCCGTTGCCAAGCCATCAA
CTACTCCCACAATTTCAAAAAAAAAAACTGCTGCTGGTACTGCTACTGCT
GTGGACCCCATAGCTGCCGCTGCCTCTAAGAACAAGAGGAAAACCAAAGG
CCCCAAGCCCGCCAACGCCACCCTGCCCGCCGTCGAGGCCTTCATCACCT
CCCTTCCTCTCACTCCAAACTCCCCTCGTACTCGTAACGGTCAAGTGGCC
GGTATCTCCCCCCGGCCCAAGGCCCCCAAGGGGTCCTCCCTCCCCTCCTC
TTCGCTCTCTACCGCTTTCCCTCCTGTTTCTGCGAAGCACCCCTCACAAC
GCAGGCCCAACACCACCTACCTTTCTTCCTCTCCCTCCCCCTTCGCCCTG
GCCAAGTCGACAAAGAAGATGTACATCAGTCGCCGAGGAGAGATCACTAC
ACCCGGTACGGGAAACGGCTCGGCATTTGCCTTGGCCTCCCTCCTTTCAC
TCAAGGATGGATCGACGGTGACGCCTGCTGAGCTGAGAGGAGTTGTGAAT
GGTTGCTTACGAAGACAGgtacgtgatgtggtttccatccctttgtctgg
ccatccctctctcctgttctaccttagaacgcctaaacccccctcttccc
tctttccctccctccatccctccctcagGACTGGAAGGGTTTGCGTCAAC
TCGCCGGTAGCGATAACGGACTCCCTGTGACCAAAGACCTGCTTGATATG
ATGGTCACAGTTACAGCCAAGGCAGGCAAGAGCAGGACGGCACGTGCGTT
GGTGGATCTCATGATTTTGAGgtaccaacggagggagtgagggagggagg
gagggagggggaaggctcgtgtgcccgtttgttgttttctatttcttgtt
tcttctaccatctctttctctctacaatccaatcaccatccactcaccta
aacaatttttctttctgcttaatcatttttcaccttcctttgtccacagA
GGCATCGTTCTCGACATGAAGAGCTATAACGCCCTTCTCCCCGCCGTGCT
GGCTGAGGCCCCTGCCTTTTTGCAGCAAGAGGCAGTGGATACGTTCCTCA
AGGATCTTTCCCGTCGAGGCCTCTCCCCTGATCGCGTGACTTTCAACACC
ATCTTGAAACACCACGCTTCCCTGGGTAAGGAGGCCCTGGCCTTGGAGAC
GTTAAGGACAATGAGCAAAACGGCTGGAGTAGCGCCGGACGTTGTGAGTT
ACACGACGGCCATCTCGGCCTGTGGGCGAGACTGGGATGGGGCTTTGAGG
GTCCTGGCGCAGGCGGAGGGAGATGGCAATATTGAGAAGGATGCCCGCTT
GTACACGGCGGCGATGCGCGTGTGTGCCTCAGCCGGGAAGAGACAGGAGG
TGTTGGATTTATTTGAACGGATGAAGGCCATGCAAGCAGCACAAACAGAA
AAGGGCGAGGGGAAGCGCAGGAAATTGGGTGGAAAGGGAGAGAGCGAGAA
CGACTTGTTGAGCATGTATATTGCCTATAATGCAGTCTTGGAGGCGTTAA
AAATGGAGGGAGACTGGCGCCAAGCCCTTAAGGTCCTTCAGGATATGCGA
CAGAGTGGCCTCACTCCCAACAGCGTTAATCATAACACGGTTTTGGACGC
AATCGCCGAAGCCGGCGAGTCCACGGAGGCGCTGGCGTTGCTGAAACAGA
TGAAGGCAGGTGGGACCAAGCCCGACAAGCGCTCCTACACCGCTGTGATC
AAGTCGATGGTTAAAACTGCAAACATCATCCAAGGCCGTGAGCTGTTTGA
GGAGATGGTCGCCACAGGCATCACCCCCGACGCCGTGACCTACACAACAC
TCATGGAGCTCTATGGCCAAGCTGGAAACAAGGAACAGATGGAACAACTC
GTCCAGCAGATGAGTCGCAAGCGTGGGTTCCCTCGGGATGTACGGGCGTT
CACGGCTGTGATCCGCGCGTATGGGCGGGCAGGGTTGTGGCGCGAAGCCT
TGGAGCTGCTGGGGACCATGAAGGCACGTAACGTCAAGCCAACGGTTGTC
AGTTATGGGACGGCCATGGCGGCGTTAGCGGCGAGCGCCCGGCATGTGGA
AGCATTTGAGTTGCTAGAGACGATGAAGAGGGAGGGGGTGGAGCCCAATC
AGGTGGTAATGGAGTGGGCGATCGAGGCATGTCGGACGGCGGGGAGGTTG
GACAAGATCGTGCAGTTGCAATGGAAGCGTTTAACGACTTAAAAAAGGAA
TATTCGAAGTTGAAAGAGGGAGGGGTGGGAGGATGTGTTTCATAGGTAAA
AGAGGGAGGAAGACAATCATGACTATATTTAGTTGCTTGTGCAAGTGAAG
AGAGGATGGATCAGGAAACGAGAAGAATTGATGGACGAAACGAAATACTG
CTCCCAAACATCAAAGACAGAAAAAGAGAGGGGGTGGAAAGTTTGGAGTA
TGTAGGTGTTTATGTGCGCGTGTGTGTGCACTTGTACGAGAGACATGGAG
ACATAGAGACCAGTTGTTTAGTTTTTGCGGGTTGGTTGACAACTACATAG
ACGAATCATCGGTAGAAACGTAAATCTCACGCAGAGACAGGGCCAGACGC
ACACACACAGATCAGGAGAAATTGAGACGGAGAAAGGAAAGGGAAAGAAC
AAGAATGAGACCCATGATAT
back to top

protein sequence of NO16G02900.1

>NO16G02900.1-protein ID=NO16G02900.1-protein|Name=NO16G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=991bp
MPPPRSFPGLAALFLLVVTAHAFFPFQLPAGPRRSPPAASPSAATTAFSR
IRAATGTLEKGAFGRFSSSLLRPFLSSSAKASMADAAAASVAAAAASSTE
APKKKTRRGPHKPKTNSTSTVAAANIVSAAAAGTSKKGKTQKPQSKANAA
LVTAAGEIKKLVSATAAADGVILAPGEKRGPHQPRPKRTPLPPKQKKQQK
PAAAATATATSAKVKDEVILLMTGPKLLRRNFTSDAAPLPPSSTYSTKAL
KRQQNMAALQGAIKEEKDGGNVQGKVVFKRELPAVARLPDVDSVEVRRKQ
QLLKQKEEEAAAALAAVPLPDPALKSETPKQSQHKKKKEAAKSTAEASRA
PVAKPSTTPTISKKKTAAGTATAVDPIAAAASKNKRKTKGPKPANATLPA
VEAFITSLPLTPNSPRTRNGQVAGISPRPKAPKGSSLPSSSLSTAFPPVS
AKHPSQRRPNTTYLSSSPSPFALAKSTKKMYISRRGEITTPGTGNGSAFA
LASLLSLKDGSTVTPAELRGVVNGCLRRQDWKGLRQLAGSDNGLPVTKDL
LDMMVTVTAKAGKSRTARALVDLMILRGIVLDMKSYNALLPAVLAEAPAF
LQQEAVDTFLKDLSRRGLSPDRVTFNTILKHHASLGKEALALETLRTMSK
TAGVAPDVVSYTTAISACGRDWDGALRVLAQAEGDGNIEKDARLYTAAMR
VCASAGKRQEVLDLFERMKAMQAAQTEKGEGKRRKLGGKGESENDLLSMY
IAYNAVLEALKMEGDWRQALKVLQDMRQSGLTPNSVNHNTVLDAIAEAGE
STEALALLKQMKAGGTKPDKRSYTAVIKSMVKTANIIQGRELFEEMVATG
ITPDAVTYTTLMELYGQAGNKEQMEQLVQQMSRKRGFPRDVRAFTAVIRA
YGRAGLWREALELLGTMKARNVKPTVVSYGTAMAALAASARHVEAFELLE
TMKREGVEPNQVVMEWAIEACRTAGRLDKIVQLQWKRLTT*
back to top
Synonyms
Publications