|
|
Properties
| Property Name | Value |
|---|
| Description | Unknown protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr16 | genome | chr16:801349..806429 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
Homology
BLAST of NO16G02800 vs. NCBI_GenBank
Match: CBN80063.1 (hypothetical protein (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 70.9 bits (172), Expect = 2.700e-8 Identity = 53/161 (32.92%), Postives = 77/161 (47.83%), Query Frame = 0
Query: 443 PTRACYTSVVEGAVKAGDMAGALKVLKLMESHGMIPSQACLVHLLKGFGSGVRVGDKEGGKEGGPVVD----------VSAALGVWQELRVLYPGQQTCRQAWETVLEACVRDPMGIEPALEILEEMARSGWNLERQYYLPLMDQLGYDAVNLERTLEPFR 594
P ACY +E V G AL +L ME G+ P++A L L++GF V D G GGP D V ALGV++EL + R ++E ++ACV P G++ A +++ M G +L+ +Y L+ G DA NL L F+
Sbjct: 560 PDAACYQLAMECCVSGGRNDEALGLLSEMEGRGLSPNEAALRALIRGFALEGVVAD---GGGGGPAADRERAERRWRGVENALGVFEELAERF--DPPSRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFG-DARNLGAALNVFQ 714
BLAST of NO16G02800 vs. NCBI_GenBank
Match: EWM23832.1 (hypothetical protein Naga_100522g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 70.5 bits (171), Expect = 3.500e-8 Identity = 51/135 (37.78%), Postives = 71/135 (52.59%), Query Frame = 0
Query: 683 PQVAARQYAIFVDKLLTHFNGLKNELHQARLEQEKREKETARNALRNAPTXXXXXXXXXXXXXXXXXXXPTEVE-----RMVLSNKAGRREAKGERTRRQLTKLKEKRVLEAAEAGAAVVVRVKEGGREGGVGGG 813
P+V AR+Y F KLL+ F+G + E+ Q R +E R KE AR +R++P+ +E ++ +KAGRREAKGER +RQL+KLKEKR E G + ++ E G EG GG
Sbjct: 21 PKVEARRYKDFARKLLSFFHGHREEIAQVRKLRESRAKEAARMTIRSSPSSGKAPPGREVMGPEGRGSEARVMESEDEAKVGGKSKAGRREAKGERLKRQLSKLKEKREGGGGEGGGVLALKGVERGLEGRKEGG 155
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G02800 ID=NO16G02800|Name=NO16G02800|organism=Nannochloropsis oceanica|type=gene|length=5081bp
ATGGCCTTGCATGTGAAGGGGCAGgtgagggagggagggagggagggagg
gagggagggagggaggggaaggagaagtgacaactgccaccatacttagg
ccacaaaattttccatgcctcacgtcctccccccctccctccctccctcc
ttccctttgtttccagTTGGCGGAAAGAGGCATTTATCCCGACTTCCGGT
TCTACTCTGTGGCCATGGAAGCCTTCTGGCGCCTGCCGCCGCTCGTGACT
CAGgtagagagggaaggagggagggagggagggaggggcggaacggaacg
gacggcagggaagtagggaagtagcatgattatgatatctcacatgtatg
agctccgccttcatcactgacgcgcccacgcgccctccctccctccctcc
ctccctccctccctccacccagGATCCCATGTCCGACGGCGACTGGCGCG
CCGAGCTGGTGCCCATTACCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCCTCTGCCGGCACCAACGGTGCCGGTCCTCGCCAGCAGACCATGCAAGA
GGTGGAAAAGATTGTGACACAgtacgtatccctccctccctccttccctc
cctccctccctccctccctccctccctccctcccccagtgaagacctcgc
cagtttggttttgcgtctcgaagtgttcacacctctccctccctccctcc
ctccctccctccctccctccctccctcagGCTCAGCATTCCTTGGGAGGC
CCGCAAGCTTCTCCATTCCCTCTACGACGAGATGCGGGCACTCGGCTTTC
GCGGCAATAGCCAGATCAAAGCCACTCTGGCACGAGGTGTCTATAGgtac
gcccgccttccctccctctttccctccctccctccctccctccctccctt
ctcgcactttgttttcctctctctatcatgccccccttccttctctctcc
ctcctcgcacgtaattcccccttccctccctccctccctccctccttccc
tccctccctccccccctccctcagGCTGGCCTCCAGTCTAAACTCTTCCC
TTGTCGGTGTGGAGTGGGGGGACGAACGCTCCTTCCGCCTGGAAGGAGCC
ATGGGCGCCACGCGAGAGTCCCTGTTGCGCATCAGCAGCAGCAGCGGCAG
TGGCGGCGGTGGTGGTGGTAGCGGTGGGAGGGAGGGGGGGAAGGAGGGGG
GGGTGGAGACGGATGCGTGGAGGTCGTTGGTAGTCATCAACGGCGTGCTG
GCGGAGTGTGTGAGGGCTAATGACACCAAGGGCGCGACACAGATGCTGCG
Ggtgaggcagagagggaggaagcgggggagggagcgaggggagggaggag
agggaagaaggaggaaagaaagcatggcactcaaccccctgtctccctcc
ctccctccctccttccttccctccctcccttttttccttccttagATGAT
GGTCAAGGCCCAGCAGGCCGCCGATCTCTCAACGTTTAATGCCCTCCTGG
CCGTGTATTCGGAGCGAGGGGACGTAGGCACGTGCGTCAgtcttttggag
acgatgcggtccacagagctcgcccgtcccgacgccctctcttacgccca
cgtcatcaacgcctgtctccagCGCCAGTGGGGGCAGGAAGGGGGGAGGA
AGGGGGGGAGGAAGGGGAGGAGATGCAGCGGGCAGTGGGCATGATGGAGG
AGGCCATTGAGATCGGCATGCTCAAGGGTAGTAAGGAGCTGTGGGACACC
CGgtacgtcttccttccctccctccctccctccctccctccctccctccc
tcgacgttccactcactcaaccgccttccttcgtcctcgtcccagATTAC
GCCTTTTCGCCTGGACCTCGCCCTCCCTCCCTTCCTCCCCCCTCGACGAC
CTGAGCGCCCTTCTTTTCGATGCGGACTCGGCGGGCCACAGCGCCTCCCT
CCCCCTCCTCTCCGAGATGCTGGCCATCTTCACCCGTCGTCGACAGTTTC
ATCGCGCCACTGCCCTCTTCTCTGCCCTCCGATGGCAACGTGTCGGCTTC
CCCCCTTCCTCCCCCCCTCCCTCCTCCCCGCCCTCCTCCTTGACCTCCCC
CTCTCTCTCCTCCGTCCTTCCCCCCCCCACCCGGGGCGTGTACCAAACTA
TGCTTCAAGCCTTCTGCTCCTCCTCCTCCTCCCCTTCCTCCTCCTCCCTT
GCGCACGGCTGGCCCGTCGCACTCACCTTATTGAAGCGGATGCAATCTCG
GGCACTGCCCTCCCTCACCTCCTGGCAGTTGGAGGCCACAGCCCCTACCC
GTGCTTGCTACACCTCCGTAGTGGAAGGAGCAGTCAAGGCAGGAGACATG
GCGGGCGCGCTGAAAgtaaggagggagggagggagggagggagggaggga
gggagggagggagggatggtaattacgtatttgtctcagttctcttacca
accatgagtgacatcctaaccaccttatcctccctccctccctccctcca
tccctccctccttcccttcagGTGCTGAAGCTAATGGAGAGCCACGGCAT
GATTCCCTCCCAGGCCTGCCTCGTCCACCTCCTCAAGGGTTTTGGGTCTG
GCGTGAGGGTGGGGGACAAGGAGGGAGGGAAGGAGGGAGGGCCGGTGGTC
GACGTGAGTGCGGCCTTGGGGGTGTGGCAGGAACTCCGGGTATTGTATCC
GGGGCAGCAGACATGCCGGCAAGCGTGGGAGACGGTGCTGGAAGCCTGTG
TGAGGGATCCAATGGGCATAGAGCCCGCCCTGGAGATTgtgagtgtccct
ccctccctccctccctcccttcgttgcagcgtggtgtgcaagggatccga
tgagctcgactgctccttcctctttccttccctccctccctcccttcttc
cttctttcctttcctcccttctcttccactctcagttgctgcgctgctcg
tgtatctcaccctctttccctccctgccttcctccctccctccctccctc
ccgcccttcctctttagCTCGAGGAGATGGCTCGCTCTGGCTGGAATTTA
GAACGTCAATATTACCTTCCCCTCATGGACCAGCTAGGATATGACGCGGT
CAATCTGGAGCGAACGTTGGAGgtagggaaagagggagggagggaaggag
ggagggagcgagcgaggggaggtctgcagtatcagctcttcgtttgtact
tcgtatgcctacacctcctccctccctccctccctccctcgctcccttcc
ttccggcaatcctcagCCCTTTCGCCTCAGTGTCGGCTACCTGGAGGCTG
GCGATGACGCGCTTGCCGCCCTCCTCTTCACCCACCAGCGCCTGGGCTTC
TCCCTGATCAAGGCCTCCGAGCAGCTCTGTGCTTTCGGTCTCGGTATCTC
CGCCGTGCAAATGACTTATCTCCGGCTGGACCAGCCCAAGAAACAGTATC
Ggtacgtcctccctcccttcttgtctccttccctccctccccctctccct
ttctccctccttcccttagcaatccaatgctcgtcccctccttcctctct
ctcctccctcgctcccttcctccctcctttcactcctccactcactcttc
acgtctttggaattggaacgcccgccacccacttcgtctccttccctccc
cttctccccccctccttctttcccttcctcagCGACGAACGCAAAGCCTT
GCTGGCGTCCTTTGAAATGCGGTCCACAATCGCTGACCTCGGCTGGCTCC
AGCTCGACTCCGAATATGATAATCCACAGgtacctcttacccctccctcc
cgccctccctcccgccctccctcccttccaatctggagaaagaagcagac
atctcaccaccctcccgccctcccttcctccctccctccctccctccctc
tcagGTGGCAGCCCGGCAGTATGCCATTTTCGTCGACAAACTTCTTACAC
ATTTCAACGGCCTCAAGAACGAGCTGCACCAAGCACGATTGGAGCAAGAG
AAACGGGAGAAAGAAACAGCAAGAAACGCCCTCAGAAACGCTCCAACCCT
CCTGCTGAAGAAGGGAGGGAGGGAAGGAGGGGGGGCGGCAGCAGCAGCGA
CGGTGCCCACGGAGGTGGAGCGTATGGTCTTGTCGAACAAGGCGGGAAGG
AGGGAGGCGAAGGGGGAGAGGACGAGGAGACAGCTGACTAAGCTGAAGGA
GAAGAGAGTCTTGGAGGCCGCCGAGGCCGGGGCGGCGGTGGTTGTGAGAG
TGAAGGAGGGAGGGAGGGAGGGAGGAGTAGGGGGGGGGTGCCAGTGGCGG
TGGTGGCGGATCAGAGGGAGCAGGCACGGAAGTTGTTTGGAGGAGGGGGA
GGAAGGGAAGGAGGGAGGCCTTCCCAGCATCAGCAGCAGCAACAACAACA
ACAACAACAAAAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAGCCATTTAGGCCAAAGCAGCAGCACCAGCAACATCAA
CATCAACAGCAGCAGAAGGGTGGAGGAGGAGGAGGAGGAGGAGGAGGGGA
TGGAGGAGGAAGCGGGAGGGCAGCGTTGGCATCAGCGCCTCGAAAGCGAG
TCCAGCGGGAGACGGTCGCTGTCATCCTTCCTTCACGAAGGGAGGGTGAG
AAGGAGGAGGGAGAAAGGGAGGGAGGGAGGGGGGAGGGATGTAAGAAGCC
ACCTAGGCCTAATGCCTGTACTCTAGTATAGTGTAATAAACGTGACATCG
ATCCATCGAGTAGTACCTCGGGGGACAGTAACGACATCAGGAAGAAATAA
GGCAATAAGTGACACGCTCGTAGACGGGGGG back to topprotein sequence of NO16G02800.1 >NO16G02800.1-protein ID=NO16G02800.1-protein|Name=NO16G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1043bp
MALHVKGQLAERGIYPDFRFYSVAMEAFWRLPPLVTQDPMSDGDWRAELV
PITLLPPSLPPSLPSAGTNGAGPRQQTMQEVEKIVTQLSIPWEARKLLHS
LYDEMRALGFRGNSQIKATLARGVYRLASSLNSSLVGVEWGDERSFRLEG
AMGATRESLLRISSSSGSGGGGGGSGGREGGKEGGVETDAWRSLVVINGV
LAECVRANDTKGATQMLRMMVKAQQAADLSTFNALLAVYSERGDVGTCVT
PVGAGRGEEGGEEGEEMQRAVGMMEEAIEIGMLKGSKELWDTRLRLFAWT
SPSLPSSPLDDLSALLFDADSAGHSASLPLLSEMLAIFTRRRQFHRATAL
FSALRWQRVGFPPSSPPPSSPPSSLTSPSLSSVLPPPTRGVYQTMLQAFC
SSSSSPSSSSLAHGWPVALTLLKRMQSRALPSLTSWQLEATAPTRACYTS
VVEGAVKAGDMAGALKVLKLMESHGMIPSQACLVHLLKGFGSGVRVGDKE
GGKEGGPVVDVSAALGVWQELRVLYPGQQTCRQAWETVLEACVRDPMGIE
PALEILEEMARSGWNLERQYYLPLMDQLGYDAVNLERTLEPFRLSVGYLE
AGDDALAALLFTHQRLGFSLIKASEQLCAFGLGISAVQMTYLRLDQPKKQ
YRDERKALLASFEMRSTIADLGWLQLDSEYDNPQVAARQYAIFVDKLLTH
FNGLKNELHQARLEQEKREKETARNALRNAPTLLLKKGGREGGGAAAAAT
VPTEVERMVLSNKAGRREAKGERTRRQLTKLKEKRVLEAAEAGAAVVVRV
KEGGREGGVGGGCQWRWWRIRGSRHGSCLEEGEEGKEGGLPSISSSNNNN
NNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQPFRPKQQHQQHQHQQQQKGGGGGGGGGGDGGGSGRAALASAPRKRV
QRETVAVILPSRREGEKEEGEREGGRGEGCKKPPRPNACTLV* back to top
|