NO16G02390.3, NO16G02390.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G02390.3
Unique Name	NO16G02390.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2197
Alignment location	chr16:687328..689802 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:687328..689802 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO16G02390.3 vs.
Match: EWM23920.1 (auxin efflux carrier-like protein [Nannochloropsis gaditana])

HSP 1 Score: 515.8 bits (1327), Expect = 1.400e-142
Identity = 269/351 (76.64%), Postives = 308/351 (87.75%), Query Frame = 0

Query:  105 QQHPSLLDVRGGAMVTLDPVVVKASMTAVGELLIACSIGAFFTRRGILDRNAIASLSSIVYHILLPSLLVVNVAKTVYATPLLTLLPLPLFGTMQIILCSCIAWVVTWLLGVDVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISFYLLGWTPIFWTYGYNLLVDSPPLSPESVDERAAITSLADKAKYLFKNPPPVLKRVASPPIIGSVGGLLLGISPLAKLFLGPAAPLGMLTNAIQTIGSAYTSMGLLVLAGSLALPLPALSAAEKVAEAGEVVRVSKGKAIPIWRQIASVCLVRFCLCPALCLSIILRSMSTGFIKLDRLMVFVLFLQSCMP 456
            +Q  +LL VRGG++  LDPVVVKAS+TAVGELL+AC IGA+FTRRGIL R AIA+LSSIVYHILLPSLLVVNVAKTVY TPL TLLPLPLFGTMQI+LCSCIAWVVT+L+G DVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISFYLLGWTPIFWTYGY+LLV +   + +S+ E+ ++ +LAD+ KY  ++PP  +KR+ SPPI+GS+GGL +G+SPLAKLFLGP APLG+LTNA+QTIGSAYTSMGLLVLAGSLALPLP  S  E+V+ A       + K+I  + QIASVCLVRFCLCPALCLSIILR+MSTG++KLDRLMVFVLFLQSCMP
Sbjct:   91 EQSSALLSVRGGSVANLDPVVVKASLTAVGELLVACGIGAWFTRRGILGREAIANLSSIVYHILLPSLLVVNVAKTVYTTPLRTLLPLPLFGTMQILLCSCIAWVVTFLMGADVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISFYLLGWTPIFWTYGYSLLVPAEAPTAQSIAEKESVVTLADRIKYFIRHPPATIKRILSPPIVGSLGGLCVGVSPLAKLFLGPRAPLGILTNAVQTIGSAYTSMGLLVLAGSLALPLPTPSPLEEVSGA-------ESKSIHPYLQIASVCLVRFCLCPALCLSIILRAMSTGWVKLDRLMVFVLFLQSCMP 434

The following BLAST results are available for this feature:

BLAST of NO16G02390.3 vs.

BLAST of NO16G02390.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23920.1	1.400e-142	76.64	auxin efflux carrier-like protein [Nannochloropsis...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G02390	NO16G02390	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G02390.3	NO16G02390.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G02390.3.cds1	NO16G02390.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02390.3.cds2	NO16G02390.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G02390.3.cds3	NO16G02390.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:687328..689802+
coding sequence from alignment at chr16:687328..689802+

mRNA sequence

>NO16G02390.3 ID=NO16G02390.3|Name=NO16G02390.3|organism=Nannochloropsis oceanica|type=mRNA|length=2197bp
TAAATCTCTTCATTAAGCTATTTTTTACTTTGTCCTTGCCTTGTACCGGA
AGACCGTAGAGGTCCATCGAGGCCCATGTGCACGCGGGCTGAAGTCAGCG
ACTGCAGCGGATTGCAGCACGTGGTAGGTGGTAGGGTCGAGTTCTATAAA
GAAGTATCCCACCCAACCCCTCTCGAGGCGCTATTGCTCCACACTTGCCT
GAATTTGGCTTCTTACCATCAAGCCCGGAATATCCAATCCTTTCTCGCAA
AAGTGTCAGCAGCCAGCCAGGACCAAGGAGTATCACGTCTAGAAGGCACG
CTACTCGGACCCTCACGACCTCATCATGGCCTTTGCACTGGGACTATTTA
TGCTGCTCATGGTGCCTGGATCGTCCATCGCTAGACTGCGTACGACAGGG
AGCATGCCGGCATATCGGCAGAGGAGATGCACTCCTCGACACATCTCGTC
AATCACGGGCTTTGTCTCTTCATCCCGACCTTGGCAAGCAGTCAGCTCAT
CCTCAGCCGGAGTGCGTGATTGTTTTCGGGCTGCAGCGACTGCACCTGCA
GGAGACCTTTTGATGGAGTCGGAGTTGTGGCCTTTGCTTCGGCGGCACCG
CCACATTCAACACAACCATGAGCAACCCTCTACGCAGCAGCAACACCCTT
CTCTGCTCGATGTCCGCGGTGGTGCCATGGTGACCCTGGATCCCGTAGTT
GTGAAAGCTTCCATGACAGCTGTGGGTGAGCTTTTGATTGCTTGTAGCAT
TGGTGCTTTTTTCACCCGCCGGGGTATCTTGGATCGAAATGCCATTGCCA
GCTTGAGCTCAATCGTATACCACATCCTCCTACCGTCTCTTCTTGTTGTA
AATGTTGCCAAGACAGTCTATGCCACTCCCCTGCTCACGTTGCTCCCACT
TCCCCTGTTCGGTACGATGCAAATCATCCTCTGCAGCTGCATTGCCTGGG
TCGTCACTTGGTTGCTGGGCGTGGATGTGAACAGTGCAAAAGGTCGCCAA
CTGCGCGTGCTCCAGACCTTTGGCAACGGTGGCGTGGCTCCCATTCTGTT
CGCTACCGTCCTGCTTCGAAATCACCCCGACCCGAGCGTGCTACCACTCG
CCATTTCCTACATTAGTTTCTATCTTCTGGGATGGACGCCTATCTTTTGG
ACGTATGGGTATAATCTTCTAGTTGATTCCCCACCGCTATCTCCTGAGTC
CGTCGACGAGAGGGCAGCTATCACAAGCCTGGCGGACAAAGCCAAGTACC
TTTTCAAGAACCCGCCCCCTGTGCTCAAGCGCGTTGCCTCCCCACCCATC
ATCGGAAGCGTCGGGGGATTGCTGCTGGGCATCAGTCCATTGGCCAAGCT
TTTTTTGGGGCCCGCAGCTCCACTTGGGATGCTTACGAACGCAATTCAAA
CTATTGGCTCAGCCTACACAAGCATGGGTCTCCTGGTGCTGGCCGGTAGC
CTCGCCTTGCCCCTCCCAGCTCTCTCCGCTGCAGAGAAAGTCGCCGAAGC
TGGCGAGGTCGTGAGGGTCTCGAAAGGCAAGGCCATCCCGATATGGCGTC
AGATTGCCAGTGTGTGCCTCGTGCGATTCTGTCTGTGTCCTGCGCTCTGC
CTTTCCATCATTTTGCGGTCCATGTCTACAGGGTTCATCAAACTGGATCG
GCTCATGGTGTTCGTGCTATTCTTACAGAGCTGCATGCCGAGGTAAGCTC
CCTCTGTCCCTCCGTCGCTCTCTTTCTCCATTCTTCTACTCTATCCCTCC
TTCCTCGTCCCCGCTCTTTCACATTCCAGCGCACCACCTCTCTTTGTTAC
TGCAGTTTTCCTTCTGCCAACTTACATTCCTCGCTTTCTTTTTTCTAGCG
CACAAAACAGCGTGCTTATGGTGCAGCTCAGCGGTCGCACTGCGGACGCC
ACCAAGCTAGCACGCATGCTCCTCTTTATATATTCCCTTTCTTGCATTCC
CATTTCCATCCTGTTGACGTTGTTTTTGCAGAAATTCAGTCTGTAACTGT
CCTGTTGTGACAGGTTGGTGACGCAGGTGGAAGTGGTTGGGAAAGGGTAC
AAGCACGAGGTGTGAATTCTCGGCGACAAACAGAAATGTACTGAAATAAA
AAAGAAAAGAAAAATACGCATCAGTTGATAAGAACGCTATTTGCAAAATA
TTGTGGACCGCTCATGCATGCTTCGGGACATTCGCGAAGAACACAAC

protein sequence of NO16G02390.3

>NO16G02390.3-protein ID=NO16G02390.3-protein|Name=NO16G02390.3|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MAFALGLFMLLMVPGSSIARLRTTGSMPAYRQRRCTPRHISSITGFVSSS
RPWQAVSSSSAGVRDCFRAAATAPAGDLLMESELWPLLRRHRHIQHNHEQ
PSTQQQHPSLLDVRGGAMVTLDPVVVKASMTAVGELLIACSIGAFFTRRG
ILDRNAIASLSSIVYHILLPSLLVVNVAKTVYATPLLTLLPLPLFGTMQI
ILCSCIAWVVTWLLGVDVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNH
PDPSVLPLAISYISFYLLGWTPIFWTYGYNLLVDSPPLSPESVDERAAIT
SLADKAKYLFKNPPPVLKRVASPPIIGSVGGLLLGISPLAKLFLGPAAPL
GMLTNAIQTIGSAYTSMGLLVLAGSLALPLPALSAAEKVAEAGEVVRVSK
GKAIPIWRQIASVCLVRFCLCPALCLSIILRSMSTGFIKLDRLMVFVLFL
QSCMPR*

mRNA from alignment at chr16:687328..689802+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G02390.3 ID=NO16G02390.3|Name=NO16G02390.3|organism=Nannochloropsis oceanica|type=mRNA|length=2475bp|location=Sequence derived from alignment at chr16:687328..689802+ (Nannochloropsis oceanica)
TAAATCTCTTCATTAAGCTATTTTTTACTTTGTCCTTGCCTTGTACCGGA
AGACCGTAGAGGTCCATCGAGGCCCATGTGCACGCGGGCTGAAGTCAGCG
ACTGCAGCGGATTGCAGCACGTGGTAGGTGGTAGGGTCGAGTTCTATAAA
GAAGTATCCCACCCAACCCCTCTCGAGGCGCTATTGCTCCACACTTGCCT
GAATTTGGCTTCTTACCATCAAGCCCGGAATATCCAATCCTTTCTCGCAA
AAGTGTCAGCAGCCAGCCAGGACCAAGGAGTATCACGTCTAGAAGGCACG
CTACTCGGACCCTCACGACCTCATCATGGCCTTTGCACTGGGACTATTTA
TGCTGCTCATGGTGCCTGGATCGTCCATCGCTAGACTGCGTACGACAGGG
AGCATGGTACGTGGTGCAGTGTGCTTATGGCGGGTGGGAGGTTACTTATG
AGCCCATGGGATGAGATATTCTACACGGTACGGCATCGGCTTGCTCAGGT
GCGAGTCATATAAACTCTTCCCTAGGGTATAACATGTCCTCACTCAACTT
CTTTTCCTTAAGCCGGCATATCGGCAGAGGAGATGCACTCCTCGACACAT
CTCGTCAATCACGGGCTTTGTCTCTTCATCCCGACCTTGGCAAGCAGTCA
GCTCATCCTCAGCCGGAGTGCGTGATTGTTTTCGGGCTGCAGCGACTGCA
CCTGCAGGAGACCTTTTGATGGAGTCGGAGTTGTGGCCTTTGCTTCGGCG
GCACCGCCACATTCAACACAACCATGAGCAACCCTCTACGCAGCAGCAAC
ACCCTTCTCTGCTCGATGTCCGCGGTGGTGCCATGGTGACCCTGGATCCC
GTAGTTGTGAAAGCTTCCATGACAGCTGTGGGTGAGCTTTTGATTGCTTG
TAGCATTGGTGCTTTTTTCACCCGCCGGGGTATCTTGGATCGAAATGCCA
TTGCCAGCTTGAGCTCAATCGTATACCACATCCTCCTACCGTCTCTTCTT
GTTGTAAATGTTGCCAAGACAGTCTATGCCACTCCCCTGCTCACGTTGCT
CCCACTTCCCCTGTTCGGTACGATGCAAATCATCCTCTGCAGCTGCATTG
CCTGGGTCGTCACTTGGTTGCTGGGCGTGGATGTGAACAGGTGCGTAAAT
AGATATAATGCGGTCTGCAGCGTCCAAATTTCACTTTGTCCCTTCAATTC
GCCTCACTTAATGCTGCATTTTCATACACAACTATCGTTCACGTGCCATA
CAATACACACAGTGCAAAAGGTCGCCAACTGCGCGTGCTCCAGACCTTTG
GCAACGGTGGCGTGGCTCCCATTCTGTTCGCTACCGTCCTGCTTCGAAAT
CACCCCGACCCGAGCGTGCTACCACTCGCCATTTCCTACATTAGTTTCTA
TCTTCTGGGATGGACGCCTATCTTTTGGACGTATGGGTATAATCTTCTAG
TTGATTCCCCACCGCTATCTCCTGAGTCCGTCGACGAGAGGGCAGCTATC
ACAAGCCTGGCGGACAAAGCCAAGTACCTTTTCAAGAACCCGCCCCCTGT
GCTCAAGCGCGTTGCCTCCCCACCCATCATCGGAAGCGTCGGGGGATTGC
TGCTGGGCATCAGTCCATTGGCCAAGCTTTTTTTGGGGCCCGCAGCTCCA
CTTGGGATGCTTACGAACGCAATTCAAACTATTGGCTCAGCCTACACAAG
CATGGGTCTCCTGGTGCTGGCCGGTAGCCTCGCCTTGCCCCTCCCAGCTC
TCTCCGCTGCAGAGAAAGTCGCCGAAGCTGGCGAGGTCGTGAGGGTCTCG
AAAGGCAAGGCCATCCCGATATGGCGTCAGATTGCCAGTGTGTGCCTCGT
GCGATTCTGTCTGTGTCCTGCGCTCTGCCTTTCCATCATTTTGCGGTCCA
TGTCTACAGGGTTCATCAAACTGGATCGGCTCATGGTGTTCGTGCTATTC
TTACAGAGCTGCATGCCGAGGTAAGCTCCCTCTGTCCCTCCGTCGCTCTC
TTTCTCCATTCTTCTACTCTATCCCTCCTTCCTCGTCCCCGCTCTTTCAC
ATTCCAGCGCACCACCTCTCTTTGTTACTGCAGTTTTCCTTCTGCCAACT
TACATTCCTCGCTTTCTTTTTTCTAGCGCACAAAACAGCGTGCTTATGGT
GCAGCTCAGCGGTCGCACTGCGGACGCCACCAAGCTAGCACGCATGCTCC
TCTTTATATATTCCCTTTCTTGCATTCCCATTTCCATCCTGTTGACGTTG
TTTTTGCAGAAATTCAGTCTGTAACTGTCCTGTTGTGACAGGTTGGTGAC
GCAGGTGGAAGTGGTTGGGAAAGGGTACAAGCACGAGGTGTGAATTCTCG
GCGACAAACAGAAATGTACTGAAATAAAAAAGAAAAGAAAAATACGCATC
AGTTGATAAGAACGCTATTTGCAAAATATTGTGGACCGCTCATGCATGCT
TCGGGACATTCGCGAAGAACACAAC

Coding sequence (CDS) from alignment at chr16:687328..689802+

>NO16G02390.3 ID=NO16G02390.3|Name=NO16G02390.3|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr16:687328..689802+ (Nannochloropsis oceanica)
ATGGCCTTTGCACTGGGACTATTTATGCTGCTCATGGTGCCTGGATCGTC
CATCGCTAGACTGCGTACGACAGGGAGCATGCCGGCATATCGGCAGAGGA
GATGCACTCCTCGACACATCTCGTCAATCACGGGCTTTGTCTCTTCATCC
CGACCTTGGCAAGCAGTCAGCTCATCCTCAGCCGGAGTGCGTGATTGTTT
TCGGGCTGCAGCGACTGCACCTGCAGGAGACCTTTTGATGGAGTCGGAGT
TGTGGCCTTTGCTTCGGCGGCACCGCCACATTCAACACAACCATGAGCAA
CCCTCTACGCAGCAGCAACACCCTTCTCTGCTCGATGTCCGCGGTGGTGC
CATGGTGACCCTGGATCCCGTAGTTGTGAAAGCTTCCATGACAGCTGTGG
GTGAGCTTTTGATTGCTTGTAGCATTGGTGCTTTTTTCACCCGCCGGGGT
ATCTTGGATCGAAATGCCATTGCCAGCTTGAGCTCAATCGTATACCACAT
CCTCCTACCGTCTCTTCTTGTTGTAAATGTTGCCAAGACAGTCTATGCCA
CTCCCCTGCTCACGTTGCTCCCACTTCCCCTGTTCGGTACGATGCAAATC
ATCCTCTGCAGCTGCATTGCCTGGGTCGTCACTTGGTTGCTGGGCGTGGA
TGTGAACAGTGCAAAAGGTCGCCAACTGCGCGTGCTCCAGACCTTTGGCA
ACGGTGGCGTGGCTCCCATTCTGTTCGCTACCGTCCTGCTTCGAAATCAC
CCCGACCCGAGCGTGCTACCACTCGCCATTTCCTACATTAGTTTCTATCT
TCTGGGATGGACGCCTATCTTTTGGACGTATGGGTATAATCTTCTAGTTG
ATTCCCCACCGCTATCTCCTGAGTCCGTCGACGAGAGGGCAGCTATCACA
AGCCTGGCGGACAAAGCCAAGTACCTTTTCAAGAACCCGCCCCCTGTGCT
CAAGCGCGTTGCCTCCCCACCCATCATCGGAAGCGTCGGGGGATTGCTGC
TGGGCATCAGTCCATTGGCCAAGCTTTTTTTGGGGCCCGCAGCTCCACTT
GGGATGCTTACGAACGCAATTCAAACTATTGGCTCAGCCTACACAAGCAT
GGGTCTCCTGGTGCTGGCCGGTAGCCTCGCCTTGCCCCTCCCAGCTCTCT
CCGCTGCAGAGAAAGTCGCCGAAGCTGGCGAGGTCGTGAGGGTCTCGAAA
GGCAAGGCCATCCCGATATGGCGTCAGATTGCCAGTGTGTGCCTCGTGCG
ATTCTGTCTGTGTCCTGCGCTCTGCCTTTCCATCATTTTGCGGTCCATGT
CTACAGGGTTCATCAAACTGGATCGGCTCATGGTGTTCGTGCTATTCTTA
CAGAGCTGCATGCCGAGGTAA

Synonyms

Publications