NO16G02360.1, NO16G02360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02360.1
Unique NameNO16G02360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1986
Alignment locationchr16:679346..681452 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:679346..681452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO16G02360.1 vs.
Match: EWM23933.1 (d-lactate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 720.7 bits (1859), Expect = 3.700e-204
Identity = 379/576 (65.80%), Postives = 450/576 (78.12%), Query Frame = 0 
Query:   12 LTASRLSMLQRWSPFHSPRVLLSTSRLPQQHQHRHA---HPPKPSISSYGIAAVAAAASSMALAMQPDNDGSSS----RLTACHASSPQETSAKEQQQQQQQQQQQPPQKAGIPLEFLAGLREIVGEANITDDADECAHHGKPWSSYHKIPSVPDVVVQPGSTEDVSRILRLCWAYRIPVVAYGGATSLEGHTLAPARGVSLDMNRMNKILRVSVEDLDATVQAGLGYLDLNESLAPQKICFPLDPGPGASIGGMCACRCSGSTAVKYGTMRDNVLNVTAVLADGTVLRTGTRARKSAAGYDLTRMLIGSEGTLGVITEVTLRLRRKPERSAALRVCFPSVRQAAAAANATLQAGVEVGRCELMDDDMIRIMNQMTGEKAMEATTLLYELVGTSETTVQEQVAQVQKVVGEHGGYGLETSENAAHAVQMWRARKEALWSTQAAYPDREVMITDVCVPLSNLADLIGQTKDEIQASFLPSPLVAHAGDGNFHAFITFHPDKQDEVAEAKRLSARMVEMALAMDGTCTGEHGVGMGKIKYLEAELGPGAIKTMGTIKRALDPHNLLNPGKILHQTMDP 581
            LT+S  S    ++    P+    T  L +   HR     HP    + S+G   +A AA    LA+   N G S+    R T C AS         +   +QQ +     +  +P +F+  LR+IVG   ++ D++E A HGKPWSSYHKI  +PDV+VQP STE VSRI+RLCW YRIPVV YGGATSLEGHTLAP+RG+SLDMNRMN+ILRVS+EDLDATV+AGLGYLDLNE+L  Q   FPLDPGPGASIGGMCACRCSGSTAVKYGTMRD+VL+VTAVLADGTVL+TG+RARKSAAGYDLTR+LIGSEGTLG++TEVTLRLRRKP+RSAA+RVCFPSVR+AAAAA+ATLQAGVEVGRCELMDD M+RIMN+M G +  EATTLLYE+VG S+  V+ Q++ V+ V  +HGGYG+  S++ A AV MWRARKEALW+ QAAYPDREVMITDVCVPLS L DLIGQ+KD+I+AS LPSPLVAHAGDGNFHAFI F PD+ +EV EAK LSA MV+ ALA+DGTCTGEHG+G+GKIKYLE E G GA++TM  IKRALDP+NLLNPGK+L Q++ P
Sbjct:   27 LTSSHGSRFMSFTEKKGPQGWTGTGTLCRCESHRSRQLRHPASSILLSHGHCILAIAAG---LAVVAQNGGVSNESRGRDTLCEASL--------EASPEQQSRDAGVNQGDLPYDFVVALRDIVGPEYVSQDSEERALHGKPWSSYHKITQIPDVIVQPASTEQVSRIMRLCWLYRIPVVPYGGATSLEGHTLAPSRGLSLDMNRMNRILRVSIEDLDATVEAGLGYLDLNEALRDQGAHFPLDPGPGASIGGMCACRCSGSTAVKYGTMRDSVLSVTAVLADGTVLKTGSRARKSAAGYDLTRLLIGSEGTLGIVTEVTLRLRRKPKRSAAIRVCFPSVREAAAAASATLQAGVEVGRCELMDDHMVRIMNEMNGLRDTEATTLLYEVVGISDVDVEGQMSLVEHVARKHGGYGILHSKDEADAVDMWRARKEALWAAQAAYPDREVMITDVCVPLSKLPDLIGQSKDKIRASSLPSPLVAHAGDGNFHAFIIFRPDRPEEVEEAKGLSAFMVKSALALDGTCTGEHGIGVGKIKYLEKEFGTGALQTMAAIKRALDPYNLLNPGKVLPQSLVP 591
The following BLAST results are available for this feature:
BLAST of NO16G02360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23933.13.700e-20465.80d-lactate dehydrogenase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02360NO16G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02360.1NO16G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02360.1.cds1NO16G02360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02360.1.cds2NO16G02360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02360.1 ID=NO16G02360.1|Name=NO16G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp
AGCCTCTACGCCCCGCACTTTGACAAAGGCTCCAGCAACCGATTGACGAT
CACACCTTCCACCGAGCAGCACAACCACCACCAGCAGCGCCCACGCCACA
TTCCCAATGTCCCGCACAGAGGTGGCGCGGGGGTTATCCTTGACGGCTTC
CCGGCTGTCAATGTTGCAGAGGTGGTCACCATTTCACTCTCCGCGGGTTT
TATTGTCGACCTCCCGGCTCCCTCAGCAGCACCAACACCGGCATGCTCAC
CCTCCCAAGCCCTCGATCTCTTCATACGGCATCGCAGCAGTGGCGGCTGC
CGCATCCTCCATGGCTCTAGCTATGCAACCCGATAATGATGGTAGCAGCA
GCAGGCTGACAGCATGCCATGCATCGTCCCCGCAAGAAACTTCGGCGAAG
GAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACCGCAAAAAGC
AGGCATCCCGCTCGAATTTCTGGCGGGGCTTCGAGAGATAGTGGGCGAAG
CAAATATCACGGACGATGCTGATGAATGCGCGCATCACGGCAAGCCATGG
AGTTCGTATCACAAGATCCCCTCTGTACCGGACGTAGTGGTGCAGCCGGG
CTCCACCGAAGACGTCTCGCGCATCTTGCGGCTATGTTGGGCATACCGCA
TCCCTGTCGTTGCCTACGGGGGCGCCACCTCCCTAGAAGGCCACACATTG
GCGCCGGCTAGGGGCGTGTCGCTGGATATGAATCGAATGAACAAAATCTT
GAGGGTGTCAGTCGAAGACTTAGATGCCACTGTGCAGGCAGGTTTGGGCT
ACCTCGATCTCAATGAATCTCTGGCGCCACAGAAGATTTGCTTCCCCTTA
GATCCAGGGCCTGGGGCGTCTATTGGCGGCATGTGTGCTTGCCGCTGCTC
GGGCTCGACGGCAGTGAAATACGGGACCATGCGCGACAACGTCTTGAATG
TCACAGCAGTCCTCGCCGACGGCACCGTCTTGCGCACCGGCACCCGAGCA
CGCAAATCTGCAGCAGGCTACGACTTGACACGGATGCTGATTGGAAGCGA
GGGCACCTTAGGTGTCATAACTGAAGTGACTTTGCGTCTGCGTCGTAAGC
CGGAGCGATCTGCGGCCCTTCGCGTGTGCTTCCCATCCGTGCGGCAAGCG
GCAGCAGCTGCCAATGCCACGCTCCAGGCTGGGGTGGAGGTGGGGAGGTG
TGAGTTGATGGATGATGATATGATCCGCATTATGAATCAGATGACGGGCG
AGAAGGCTATGGAAGCCACGACGTTGCTGTATGAATTGGTAGGTACATCC
GAGACGACGGTACAGGAGCAGGTAGCGCAGGTGCAGAAGGTCGTGGGGGA
GCATGGAGGGTATGGACTCGAGACATCTGAGAATGCGGCTCACGCAGTAC
AAATGTGGCGGGCCCGAAAGGAGGCCCTCTGGTCGACGCAGGCGGCGTAC
CCGGACAGAGAGGTAATGATTACTGATGTCTGCGTACCTTTGTCTAATCT
GGCAGATTTAATCGGGCAGACCAAGGACGAGATTCAGGCCTCGTTTTTGC
CCTCTCCTTTGGTGGCTCATGCGGGGGACGGAAATTTCCATGCATTTATA
ACCTTTCATCCTGACAAGCAGGATGAAGTGGCGGAGGCCAAGCGACTGAG
TGCGCGGATGGTGGAGATGGCCTTGGCAATGGATGGGACATGCACGGGCG
AGCATGGCGTGGGGATGGGGAAAATCAAGTATCTGGAGGCGGAGCTCGGG
CCTGGTGCTATCAAAACCATGGGGACGATCAAGCGCGCCCTGGATCCGCA
TAACCTTTTAAATCCGGGGAAGATATTACATCAGACCATGGACCCCAGGA
CGGGGCGTTTCCATTTGTGTGTATGAGTCGGAAAGTGATAGTTGAGCCAT
GAGAAATGGTTTGAGAGAACAGGAACAAACGAGGGGAACAAACGAGACGC
ACGTATACATCACGAAACGGTGATCTACTCTCGGGA
back to top

protein sequence of NO16G02360.1

>NO16G02360.1-protein ID=NO16G02360.1-protein|Name=NO16G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MSRTEVARGLSLTASRLSMLQRWSPFHSPRVLLSTSRLPQQHQHRHAHPP
KPSISSYGIAAVAAAASSMALAMQPDNDGSSSRLTACHASSPQETSAKEQ
QQQQQQQQQQPPQKAGIPLEFLAGLREIVGEANITDDADECAHHGKPWSS
YHKIPSVPDVVVQPGSTEDVSRILRLCWAYRIPVVAYGGATSLEGHTLAP
ARGVSLDMNRMNKILRVSVEDLDATVQAGLGYLDLNESLAPQKICFPLDP
GPGASIGGMCACRCSGSTAVKYGTMRDNVLNVTAVLADGTVLRTGTRARK
SAAGYDLTRMLIGSEGTLGVITEVTLRLRRKPERSAALRVCFPSVRQAAA
AANATLQAGVEVGRCELMDDDMIRIMNQMTGEKAMEATTLLYELVGTSET
TVQEQVAQVQKVVGEHGGYGLETSENAAHAVQMWRARKEALWSTQAAYPD
REVMITDVCVPLSNLADLIGQTKDEIQASFLPSPLVAHAGDGNFHAFITF
HPDKQDEVAEAKRLSARMVEMALAMDGTCTGEHGVGMGKIKYLEAELGPG
AIKTMGTIKRALDPHNLLNPGKILHQTMDPRTGRFHLCV*
back to top

mRNA from alignment at chr16:679346..681452-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02360.1 ID=NO16G02360.1|Name=NO16G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp|location=Sequence derived from alignment at chr16:679346..681452- (Nannochloropsis oceanica)
AGCCTCTACGCCCCGCACTTTGACAAAGGCTCCAGCAACCGATTGACGAT
CACACCTTCCACCGAGCAGCACAACCACCACCAGCAGCGCCCACGCCACA
TTCCCAATGTCCCGCACAGAGGTGGCGCGGGGGTTATCCTTGACGGCTTC
CCGGCTGTCAATGTTGCAGAGGTGGTCACCATTTCACTCTCCGCGGGTTT
TATTGTCGACCTCCCGGCTCCCTCAGCAGCACCAACACCGGCATGCTCAC
CCTCCCAAGCCCTCGATCTCTTCATACGGCATCGCAGCAGTGGCGGCTGC
CGCATCCTCCATGGCTCTAGCTATGCAACCCGATAATGATGGTAGCAGCA
GCAGGCTGACAGCATGCCATGCATCGTCCCCGCAAGAAACTTCGGCGAAG
GAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACCGCAAAAAGC
AGGCATCCCGCTCGAATTTCTGGCGGGGCTTCGAGAGATAGTGGGCGAAG
CAAATATCACGGACGATGCTGATGAATGCGCGCATCACGGCAAGCCATGG
AGTTCGTATCACAAGATCCCCTCTGTACCGGACGTAGTGGTGCAGCCGGG
CTCCACCGAAGACGTCTCGCGCATCTTGCGGCTATGTTGGTACGTGACAA
GTGATTGTGAGGGATGTAGATTAGTCTGGAGGAAAGACACATAGATTTTT
TTTTTTACTTTGTCTCACATCTCTAACTCTTTCACCCCACTTAACCACAT
CACAAATCAGGGCATACCGCATCCCTGTCGTTGCCTACGGGGGCGCCACC
TCCCTAGAAGGCCACACATTGGCGCCGGCTAGGGGCGTGTCGCTGGATAT
GAATCGAATGAACAAAATCTTGAGGGTGTCAGTCGAAGACTTAGATGCCA
CTGTGCAGGCAGGTTTGGGCTACCTCGATCTCAATGAATCTCTGGCGCCA
CAGAAGATTTGCTTCCCCTTAGATCCAGGGCCTGGGGCGTCTATTGGCGG
CATGTGTGCTTGCCGCTGCTCGGGCTCGACGGCAGTGAAATACGGGACCA
TGCGCGACAACGTCTTGAATGTCACAGCAGTCCTCGCCGACGGCACCGTC
TTGCGCACCGGCACCCGAGCACGCAAATCTGCAGCAGGCTACGACTTGAC
ACGGATGCTGATTGGAAGCGAGGGCACCTTAGGTGTCATAACTGAAGTGA
CTTTGCGTCTGCGTCGTAAGCCGGAGCGATCTGCGGCCCTTCGCGTGTGC
TTCCCATCCGTGCGGCAAGCGGCAGCAGCTGCCAATGCCACGCTCCAGGC
TGGGGTGGAGGTGGGGAGGTGTGAGTTGATGGATGATGATATGATCCGCA
TTATGAATCAGATGACGGGCGAGAAGGCTATGGAAGCCACGACGTTGCTG
TATGAATTGGTAGGTACATCCGAGACGACGGTACAGGAGCAGGTAGCGCA
GGTGCAGAAGGTCGTGGGGGAGCATGGAGGGTATGGACTCGAGACATCTG
AGAATGCGGCTCACGCAGTACAAATGTGGCGGGCCCGAAAGGAGGCCCTC
TGGTCGACGCAGGCGGCGTACCCGGACAGAGAGGTAATGATTACTGATGT
CTGCGTACCTTTGTCTAATCTGGCAGATTTAATCGGGCAGACCAAGGACG
AGATTCAGGCCTCGTTTTTGCCCTCTCCTTTGGTGGCTCATGCGGGGGAC
GGAAATTTCCATGCATTTATAACCTTTCATCCTGACAAGCAGGATGAAGT
GGCGGAGGCCAAGCGACTGAGTGCGCGGATGGTGGAGATGGCCTTGGCAA
TGGATGGGACATGCACGGGCGAGCATGGCGTGGGGATGGGGAAAATCAAG
TATCTGGAGGCGGAGCTCGGGCCTGGTGCTATCAAAACCATGGGGACGAT
CAAGCGCGCCCTGGATCCGCATAACCTTTTAAATCCGGGGAAGATATTAC
ATCAGACCATGGACCCCAGGACGGGGCGTTTCCATTTGTGTGTATGAGTC
GGAAAGTGATAGTTGAGCCATGAGAAATGGTTTGAGAGAACAGGAACAAA
CGAGGGGAACAAACGAGACGCACGTATACATCACGAAACGGTGATCTACT
CTCGGGA
back to top

Coding sequence (CDS) from alignment at chr16:679346..681452-

>NO16G02360.1 ID=NO16G02360.1|Name=NO16G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at chr16:679346..681452- (Nannochloropsis oceanica)
ATGTCCCGCACAGAGGTGGCGCGGGGGTTATCCTTGACGGCTTCCCGGCT
GTCAATGTTGCAGAGGTGGTCACCATTTCACTCTCCGCGGGTTTTATTGT
CGACCTCCCGGCTCCCTCAGCAGCACCAACACCGGCATGCTCACCCTCCC
AAGCCCTCGATCTCTTCATACGGCATCGCAGCAGTGGCGGCTGCCGCATC
CTCCATGGCTCTAGCTATGCAACCCGATAATGATGGTAGCAGCAGCAGGC
TGACAGCATGCCATGCATCGTCCCCGCAAGAAACTTCGGCGAAGGAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACCGCAAAAAGCAGGCAT
CCCGCTCGAATTTCTGGCGGGGCTTCGAGAGATAGTGGGCGAAGCAAATA
TCACGGACGATGCTGATGAATGCGCGCATCACGGCAAGCCATGGAGTTCG
TATCACAAGATCCCCTCTGTACCGGACGTAGTGGTGCAGCCGGGCTCCAC
CGAAGACGTCTCGCGCATCTTGCGGCTATGTTGGGCATACCGCATCCCTG
TCGTTGCCTACGGGGGCGCCACCTCCCTAGAAGGCCACACATTGGCGCCG
GCTAGGGGCGTGTCGCTGGATATGAATCGAATGAACAAAATCTTGAGGGT
GTCAGTCGAAGACTTAGATGCCACTGTGCAGGCAGGTTTGGGCTACCTCG
ATCTCAATGAATCTCTGGCGCCACAGAAGATTTGCTTCCCCTTAGATCCA
GGGCCTGGGGCGTCTATTGGCGGCATGTGTGCTTGCCGCTGCTCGGGCTC
GACGGCAGTGAAATACGGGACCATGCGCGACAACGTCTTGAATGTCACAG
CAGTCCTCGCCGACGGCACCGTCTTGCGCACCGGCACCCGAGCACGCAAA
TCTGCAGCAGGCTACGACTTGACACGGATGCTGATTGGAAGCGAGGGCAC
CTTAGGTGTCATAACTGAAGTGACTTTGCGTCTGCGTCGTAAGCCGGAGC
GATCTGCGGCCCTTCGCGTGTGCTTCCCATCCGTGCGGCAAGCGGCAGCA
GCTGCCAATGCCACGCTCCAGGCTGGGGTGGAGGTGGGGAGGTGTGAGTT
GATGGATGATGATATGATCCGCATTATGAATCAGATGACGGGCGAGAAGG
CTATGGAAGCCACGACGTTGCTGTATGAATTGGTAGGTACATCCGAGACG
ACGGTACAGGAGCAGGTAGCGCAGGTGCAGAAGGTCGTGGGGGAGCATGG
AGGGTATGGACTCGAGACATCTGAGAATGCGGCTCACGCAGTACAAATGT
GGCGGGCCCGAAAGGAGGCCCTCTGGTCGACGCAGGCGGCGTACCCGGAC
AGAGAGGTAATGATTACTGATGTCTGCGTACCTTTGTCTAATCTGGCAGA
TTTAATCGGGCAGACCAAGGACGAGATTCAGGCCTCGTTTTTGCCCTCTC
CTTTGGTGGCTCATGCGGGGGACGGAAATTTCCATGCATTTATAACCTTT
CATCCTGACAAGCAGGATGAAGTGGCGGAGGCCAAGCGACTGAGTGCGCG
GATGGTGGAGATGGCCTTGGCAATGGATGGGACATGCACGGGCGAGCATG
GCGTGGGGATGGGGAAAATCAAGTATCTGGAGGCGGAGCTCGGGCCTGGT
GCTATCAAAACCATGGGGACGATCAAGCGCGCCCTGGATCCGCATAACCT
TTTAAATCCGGGGAAGATATTACATCAGACCATGGACCCCAGGACGGGGC
GTTTCCATTTGTGTGTATGA
back to top
Synonyms
Publications