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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr16 | genome | chr16:671802..674164 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G02330.1 vs.
Match: EWM23939.1 (transcription initiation factor tfiid subunit [Nannochloropsis gaditana]) HSP 1 Score: 563.9 bits (1452), Expect = 4.800e-157 Identity = 332/494 (67.21%), Postives = 372/494 (75.30%), Query Frame = 0
Query: 6 MSGHYVQQAQAFVLRLPEHLEESVRARLKTGGMDGVQLTARPDGFEGLPEYAVQRGGLLELRLGA-RKATEDAPDGGEYDDEEEEHEPRVFPARLVNLPCVVEMHKTVDYVTLFKSGDVGQMVVVYANETELLEDLRREEEERDKIRQKGGRDGQADAELRVRQQLNYYHSGLTPPTTNIVRRRFAETRLHGPYPPAVVAKVQRELAAHVAALEEKREVAEVVEDVVEFEDYMADMHGQPVTIAEDSAQWLEHPELLIHRPVVLAPDDPAFFSVAAAVSAAATGAAAPATGNDGAHLVEAAALQQATSVMAGKGGRRGGGGGG------RGQGGGGSSSGRVGRGRGAGRGGGRRNRGQQQGVGPASPGAAAAAVAVAGP----VGGNEDIGGPLIMVEPPGGPPTYGEMQPPPPPPSHRRQKDPREREKDSRNLGGQRVGGRVITGNVPAPDLPPDPDFDNAFLGEDGEDDFLDFLEGGVGEEGGLMDEGLLD 489
MSGHY QQA FVLRLPEHLEE +RARL+ G MDGVQLTARPDG EGLP+YA +RGGLLELRLG R+A+E+ DDE E RVFPARLVNLPCVVE+HKTVDYVTLFKS DVGQMVVVY +E +LED+ REEEER K+R+KGG+D + AEL +R QL+YYHSGLTPPTTNIVRRRFAETR+HGPYP A VAKVQ ELAAHVAALEEKREV+EVVEDVV+FEDYMADMHGQPVTIAEDSA WLEHPELLIHRPVVLAPDDPA A+A+ AA A A + A +Q+ ++ KG R G GGG RG+GG + S R GRR R Q+QG ASP A AAA + P G E PLIM+EPP GPP+YGEMQPPPPPPSHRR ++P K+SR GGQRVGG VITGN+PAPD+PPDP+FDNAFLGEDGEDDFLDFLEGGV EEGGLMDEG L+
Sbjct: 1 MSGHYAQQA--FVLRLPEHLEEIIRARLRAGNMDGVQLTARPDGSEGLPKYAAKRGGLLELRLGGGRRASEEDLYSDGKDDESER--ARVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYKDEAAMLEDMLREEEERGKMREKGGKDDEGKAELSLRAQLDYYHSGLTPPTTNIVRRRFAETRMHGPYPAATVAKVQGELAAHVAALEEKREVSEVVEDVVDFEDYMADMHGQPVTIAEDSALWLEHPELLIHRPVVLAPDDPALGPAASALPAAPKPFPADAA-------YDPAFIQEGSTAPTSKGSSRPGKGGGGRGSPVRGRGGRSTRSAR----------SGRRGRTQRQGGADASPAARAAASDSSLPPVAISGCPEGASAPLIMLEPPAGPPSYGEMQPPPPPPSHRRHREP----KESRITGGQRVGGPVITGNLPAPDVPPDPEFDNAFLGEDGEDDFLDFLEGGVEEEGGLMDEGFLE 469
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G02330.1 ID=NO16G02330.1|Name=NO16G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2086bp
ACTCAACATTTACTTTCTTATCCTTCATAACACGCAACGATGACAAGCGT
AGCCATGAGCGGCCACTACGTGCAGCAGGCGCAGGCCTTTGTGCTGCGGT
TGCCGGAGCACCTAGAGGAGAGCGTACGAGCCCGGCTCAAGACGGGAGGC
ATGGACGGGGTGCAACTAACAGCCAGGCCGGACGGCTTCGAGGGTTTACC
TGAGTACGCAGTGCAGAGGGGAGGCTTGTTGGAGCTGAGGCTTGGGGCAC
GAAAGGCCACGGAAGACGCGCCCGATGGAGGAGAATATGACGACGAAGAG
GAGGAGCATGAACCACGAGTCTTCCCCGCACGTTTGGTGAATTTGCCTTG
TGTGGTGGAGATGCACAAGACGGTGGATTACGTAACGCTCTTTAAGAGCG
GGGATGTTGGGCAAATGGTGGTAGTCTACGCGAACGAAACCGAGCTCCTC
GAAGACCTCCGACGCGAAGAGGAAGAACGGGACAAGATTCGTCAAAAGGG
AGGAAGGGACGGACAGGCCGATGCTGAATTGCGTGTCAGGCAGCAGCTCA
ACTACTACCACTCTGGCCTTACCCCACCCACTACCAACATCGTCCGACGG
CGCTTCGCCGAGACCCGCCTGCACGGCCCGTACCCCCCCGCCGTCGTCGC
CAAGGTCCAACGCGAATTGGCTGCGCACGTGGCAGCACTGGAGGAGAAGA
GGGAGGTGGCTGAAGTGGTGGAAGATGTGGTTGAATTCGAAGACTATATG
GCGGACATGCACGGCCAGCCTGTCACCATTGCAGAGGACTCGGCCCAGTG
GCTCGAGCACCCCGAGCTACTCATCCATCGACCAGTCGTCCTTGCCCCCG
ATGACCCAGCTTTTTTTTCAGTGGCCGCTGCTGTCTCCGCGGCTGCAACT
GGTGCTGCTGCTCCTGCTACCGGCAATGATGGGGCTCACTTGGTTGAGGC
TGCTGCTCTTCAGCAGGCCACGTCGGTGATGGCGGGGAAAGGCGGACGGC
GCGGTGGTGGAGGGGGAGGGCGAGGGCAGGGAGGAGGAGGGTCGTCAAGT
GGGCGAGTAGGGAGAGGAAGAGGAGCTGGCCGGGGTGGTGGACGCCGGAA
CCGTGGGCAACAACAGGGGGTTGGGCCTGCGTCTCCTGGTGCGGCTGCTG
CTGCGGTTGCTGTTGCTGGCCCAGTTGGTGGGAATGAAGATATAGGCGGC
CCGTTGATCATGGTGGAGCCACCAGGAGGACCACCGACGTACGGGGAGAT
GCAACCTCCTCCCCCTCCTCCTTCGCACCGACGGCAGAAGGACCCAAGGG
AGAGGGAGAAGGACAGTCGCAATCTGGGGGGGCAACGCGTAGGTGGTCGG
GTGATCACGGGAAATGTTCCTGCGCCAGACTTGCCGCCTGATCCTGATTT
TGATAATGCCTTTTTAGGGGAGGATGGGGAGGATGATTTCCTGGACTTCT
TGGAAGGGGGCGTGGGGGAAGAAGGGGGGTTGATGGACGAGGGGCTGCTT
GATTAACCCTATCTTTCCTTCCTTTTTCCCCCCCGTAATAACTCTCCAAC
CGATGTACCTCGCTCAGTGTAAAAAGTTGCTCCGGCTTGTGCAGAAACAT
TGAATACAAGACACAGCCAATGACATTTCCACCTGTCAAGCAGTTATGGC
AGCAGCTGGACGACGAAGAGCAGCGCGCTGGACAGTGAAATGAAATGTGA
GGCGGTAGCATAGAGTCCCTTCGACAAGGACTTTGGTTTGCGAACGCATT
AGCTTCGACAGGTGATTGTGAAGCTTGTGCTATCCGCGCCTGCTTAGTTG
CAGCAGTAGCAGCAGCTGTGGTAGTAGCATGGGTAGCGCGGTGGACGGCA
GAGACGCAACACGATGACGCTGCATTGGGGCTCATGGGCCTTGATTGGTC
ACGAGGTACTCGATTAGTTCGCGTCTTCTTGGTCGTTTTAGCAGCAGCAG
CAGACCGATGTTGGGGATGAAGGAGGGGAGGAGGATAAGATCATGGAAGA
TGTGCATACAAAACTTTTGTATAAAACCGACTTTTATTATCATAACACAC
GCAAGTGCAAGAAAATAAATTACTAGTGAGGCAAAT back to topprotein sequence of NO16G02330.1 >NO16G02330.1-protein ID=NO16G02330.1-protein|Name=NO16G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MTSVAMSGHYVQQAQAFVLRLPEHLEESVRARLKTGGMDGVQLTARPDGF
EGLPEYAVQRGGLLELRLGARKATEDAPDGGEYDDEEEEHEPRVFPARLV
NLPCVVEMHKTVDYVTLFKSGDVGQMVVVYANETELLEDLRREEEERDKI
RQKGGRDGQADAELRVRQQLNYYHSGLTPPTTNIVRRRFAETRLHGPYPP
AVVAKVQRELAAHVAALEEKREVAEVVEDVVEFEDYMADMHGQPVTIAED
SAQWLEHPELLIHRPVVLAPDDPAFFSVAAAVSAAATGAAAPATGNDGAH
LVEAAALQQATSVMAGKGGRRGGGGGGRGQGGGGSSSGRVGRGRGAGRGG
GRRNRGQQQGVGPASPGAAAAAVAVAGPVGGNEDIGGPLIMVEPPGGPPT
YGEMQPPPPPPSHRRQKDPREREKDSRNLGGQRVGGRVITGNVPAPDLPP
DPDFDNAFLGEDGEDDFLDFLEGGVGEEGGLMDEGLLD* back to topmRNA from alignment at chr16:671802..674164- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G02330.1 ID=NO16G02330.1|Name=NO16G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2363bp|location=Sequence derived from alignment at chr16:671802..674164- (Nannochloropsis oceanica)
ACTCAACATTTACTTTCTTATCCTTCATAACACGCAACGATGACAAGCGT
AGCCATGAGCGGCCACTACGTGCAGCAGGCGCAGGCCTTTGTGCTGCGGT
TGCCGGAGCACCTAGAGGAGAGCGTACGAGCCCGGCTCAAGACGGGAGGC
ATGGACGGGGTGCAACTAACAGCCAGGCCGGACGGCTTCGAGGGTTTACG
TGAGTGTTGTAGGGAAGGGAGGGGGGCGGGAGGGTTGTGTCCATCGGCTT
AGGGAGGTACTGTTTCCGGAGGGCTGAGTTGAACGTGGAGGGAGCTGAGT
GTGGATCGATAAAGCCCTTCCTGTGTCTTCCAAACCCCTACCCCTCCCTC
GCTACTCCTTCGTCTTTTGGTTTGATGACAGGCGTTCTTATTTGCGTGTC
AACCATTAAGTTCATATTCATCTACAATCTTCATCGCTAATCGACAATTT
ACTTTACTGATATGCACACAACACAGCTGAGTACGCAGTGCAGAGGGGAG
GCTTGTTGGAGCTGAGGCTTGGGGCACGAAAGGCCACGGAAGACGCGCCC
GATGGAGGAGAATATGACGACGAAGAGGAGGAGCATGAACCACGAGTCTT
CCCCGCACGTTTGGTGAATTTGCCTTGTGTGGTGGAGATGCACAAGACGG
TGGATTACGTAACGCTCTTTAAGAGCGGGGATGTTGGGCAAATGGTGGTA
GTCTACGCGAACGAAACCGAGCTCCTCGAAGACCTCCGACGCGAAGAGGA
AGAACGGGACAAGATTCGTCAAAAGGGAGGAAGGGACGGACAGGCCGATG
CTGAATTGCGTGTCAGGCAGCAGCTCAACTACTACCACTCTGGCCTTACC
CCACCCACTACCAACATCGTCCGACGGCGCTTCGCCGAGACCCGCCTGCA
CGGCCCGTACCCCCCCGCCGTCGTCGCCAAGGTCCAACGCGAATTGGCTG
CGCACGTGGCAGCACTGGAGGAGAAGAGGGAGGTGGCTGAAGTGGTGGAA
GATGTGGTTGAATTCGAAGACTATATGGCGGACATGCACGGCCAGCCTGT
CACCATTGCAGAGGACTCGGCCCAGTGGCTCGAGCACCCCGAGCTACTCA
TCCATCGACCAGTCGTCCTTGCCCCCGATGACCCAGCTTTTTTTTCAGTG
GCCGCTGCTGTCTCCGCGGCTGCAACTGGTGCTGCTGCTCCTGCTACCGG
CAATGATGGGGCTCACTTGGTTGAGGCTGCTGCTCTTCAGCAGGCCACGT
CGGTGATGGCGGGGAAAGGCGGACGGCGCGGTGGTGGAGGGGGAGGGCGA
GGGCAGGGAGGAGGAGGGTCGTCAAGTGGGCGAGTAGGGAGAGGAAGAGG
AGCTGGCCGGGGTGGTGGACGCCGGAACCGTGGGCAACAACAGGGGGTTG
GGCCTGCGTCTCCTGGTGCGGCTGCTGCTGCGGTTGCTGTTGCTGGCCCA
GTTGGTGGGAATGAAGATATAGGCGGCCCGTTGATCATGGTGGAGCCACC
AGGAGGACCACCGACGTACGGGGAGATGCAACCTCCTCCCCCTCCTCCTT
CGCACCGACGGCAGAAGGACCCAAGGGAGAGGGAGAAGGACAGTCGCAAT
CTGGGGGGGCAACGCGTAGGTGGTCGGGTGATCACGGGAAATGTTCCTGC
GCCAGACTTGCCGCCTGATCCTGATTTTGATAATGCCTTTTTAGGGGAGG
ATGGGGAGGATGATTTCCTGGACTTCTTGGAAGGGGGCGTGGGGGAAGAA
GGGGGGTTGATGGACGAGGGGCTGCTTGATTAACCCTATCTTTCCTTCCT
TTTTCCCCCCCGTAATAACTCTCCAACCGATGTACCTCGCTCAGTGTAAA
AAGTTGCTCCGGCTTGTGCAGAAACATTGAATACAAGACACAGCCAATGA
CATTTCCACCTGTCAAGCAGTTATGGCAGCAGCTGGACGACGAAGAGCAG
CGCGCTGGACAGTGAAATGAAATGTGAGGCGGTAGCATAGAGTCCCTTCG
ACAAGGACTTTGGTTTGCGAACGCATTAGCTTCGACAGGTGATTGTGAAG
CTTGTGCTATCCGCGCCTGCTTAGTTGCAGCAGTAGCAGCAGCTGTGGTA
GTAGCATGGGTAGCGCGGTGGACGGCAGAGACGCAACACGATGACGCTGC
ATTGGGGCTCATGGGCCTTGATTGGTCACGAGGTACTCGATTAGTTCGCG
TCTTCTTGGTCGTTTTAGCAGCAGCAGCAGACCGATGTTGGGGATGAAGG
AGGGGAGGAGGATAAGATCATGGAAGATGTGCATACAAAACTTTTGTATA
AAACCGACTTTTATTATCATAACACACGCAAGTGCAAGAAAATAAATTAC
TAGTGAGGCAAAT back to topCoding sequence (CDS) from alignment at chr16:671802..674164- >NO16G02330.1 ID=NO16G02330.1|Name=NO16G02330.1|organism=Nannochloropsis oceanica|type=CDS|length=1467bp|location=Sequence derived from alignment at chr16:671802..674164- (Nannochloropsis oceanica)
ATGACAAGCGTAGCCATGAGCGGCCACTACGTGCAGCAGGCGCAGGCCTT
TGTGCTGCGGTTGCCGGAGCACCTAGAGGAGAGCGTACGAGCCCGGCTCA
AGACGGGAGGCATGGACGGGGTGCAACTAACAGCCAGGCCGGACGGCTTC
GAGGGTTTACCTGAGTACGCAGTGCAGAGGGGAGGCTTGTTGGAGCTGAG
GCTTGGGGCACGAAAGGCCACGGAAGACGCGCCCGATGGAGGAGAATATG
ACGACGAAGAGGAGGAGCATGAACCACGAGTCTTCCCCGCACGTTTGGTG
AATTTGCCTTGTGTGGTGGAGATGCACAAGACGGTGGATTACGTAACGCT
CTTTAAGAGCGGGGATGTTGGGCAAATGGTGGTAGTCTACGCGAACGAAA
CCGAGCTCCTCGAAGACCTCCGACGCGAAGAGGAAGAACGGGACAAGATT
CGTCAAAAGGGAGGAAGGGACGGACAGGCCGATGCTGAATTGCGTGTCAG
GCAGCAGCTCAACTACTACCACTCTGGCCTTACCCCACCCACTACCAACA
TCGTCCGACGGCGCTTCGCCGAGACCCGCCTGCACGGCCCGTACCCCCCC
GCCGTCGTCGCCAAGGTCCAACGCGAATTGGCTGCGCACGTGGCAGCACT
GGAGGAGAAGAGGGAGGTGGCTGAAGTGGTGGAAGATGTGGTTGAATTCG
AAGACTATATGGCGGACATGCACGGCCAGCCTGTCACCATTGCAGAGGAC
TCGGCCCAGTGGCTCGAGCACCCCGAGCTACTCATCCATCGACCAGTCGT
CCTTGCCCCCGATGACCCAGCTTTTTTTTCAGTGGCCGCTGCTGTCTCCG
CGGCTGCAACTGGTGCTGCTGCTCCTGCTACCGGCAATGATGGGGCTCAC
TTGGTTGAGGCTGCTGCTCTTCAGCAGGCCACGTCGGTGATGGCGGGGAA
AGGCGGACGGCGCGGTGGTGGAGGGGGAGGGCGAGGGCAGGGAGGAGGAG
GGTCGTCAAGTGGGCGAGTAGGGAGAGGAAGAGGAGCTGGCCGGGGTGGT
GGACGCCGGAACCGTGGGCAACAACAGGGGGTTGGGCCTGCGTCTCCTGG
TGCGGCTGCTGCTGCGGTTGCTGTTGCTGGCCCAGTTGGTGGGAATGAAG
ATATAGGCGGCCCGTTGATCATGGTGGAGCCACCAGGAGGACCACCGACG
TACGGGGAGATGCAACCTCCTCCCCCTCCTCCTTCGCACCGACGGCAGAA
GGACCCAAGGGAGAGGGAGAAGGACAGTCGCAATCTGGGGGGGCAACGCG
TAGGTGGTCGGGTGATCACGGGAAATGTTCCTGCGCCAGACTTGCCGCCT
GATCCTGATTTTGATAATGCCTTTTTAGGGGAGGATGGGGAGGATGATTT
CCTGGACTTCTTGGAAGGGGGCGTGGGGGAAGAAGGGGGGTTGATGGACG
AGGGGCTGCTTGATTAA back to top
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