NO16G02280.3, NO16G02280.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02280.3
Unique NameNO16G02280.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1685
Alignment locationchr16:661921..664048 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:661921..664048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02280.3 vs.
Match: EWM23923.1 (phosphatidylinositol n-acetylglucosaminyltransferase subunit h [Nannochloropsis gaditana])

HSP 1 Score: 80.9 bits (198), Expect = 4.100e-12
Identity = 53/127 (41.73%), Postives = 73/127 (57.48%), Query Frame = 0 
Query:    4 KKGRLVYRRTAHASTVLHELARPPSTSSSTSLGLRIVRLLLVGTIAALLWTSRCAGDQGFLNEKNIALALSPSACILGGFTVVVLTLAHWVLALLEQHHVEAESVLLIKDLGVQLQTRYTSGREECE 131
            KK  L+YR   HA+  LHE AR  S  S+       V   L  T   +L  +   G+  + + K+  LALSP   ILGGF  VV  L   + + ++Q ++E ES+LLI DLG+QLQTRYT+G+E+ E
Sbjct:   14 KKPELLYRGKKHAAICLHEFARRSSPGSTLFSKRAFVSRSLRPTAIVVLIAAFLGGN--YADVKSFFLALSPWIYILGGFASVVFALTRLISSHIKQCNIETESMLLINDLGLQLQTRYTNGQEKSE 138
The following BLAST results are available for this feature:
BLAST of NO16G02280.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23923.14.100e-1241.73phosphatidylinositol n-acetylglucosaminyltransfera... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02280NO16G02280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02280.3NO16G02280.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02280.3.cds1NO16G02280.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02280.3.cds2NO16G02280.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02280.3.cds3NO16G02280.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02280.3.cds4NO16G02280.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02280.3 ID=NO16G02280.3|Name=NO16G02280.3|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp
CTCAACTTATCACTCGATCGATTCCTCAATTAATTATATTTGTGCCTTCC
CCTTCTTCGACACGGTCGCGGACGGCTTTTTCTATTAGGTAGAGGGCAAC
AGGTGAGAGAAAGACAACTGCCTGAGATGCACCATACGCCTCTCCGTGGT
CACTGCCGCGCTCGTACCTACCCTCGATAAGCCTTTTGTATTAGCTATAC
CAAAAAATATTCCATTAAAAAGAAAGTTGCGACCGCCAGACCTGAGTTAT
CTCAATTCAAGGCCTTCCGTTTAATCCTTGAGCGACCACGGCCTTGTTAT
ACAGCGCATCAAGTGCGTAAAAATTGTACCTCTGCGGCATCTATTATTAT
CTGACGCCACAACCCTTCAAACAGCGAGCCTTCCTATCTAAAGTATTAAT
AGATTTTTAGCTATAGTAGTATTATTTGCATAGCATGTCGTAAAGATGAT
TAATAGAAACTCATGGCCACTATAGGAGGGCAGGCCACTGCCTCATACTC
CTCTTCCACAAATAATACGCTCTTCCCTCTAATGTACTTCCGCACACGTT
ACCCGCTCGCTACACACACAGGCAACGTAGCAAGCACCGCGCGAATGGTG
CTCTACGATGCCTAGCAAAAAGGGACGCTTAGTGTACCGCAGGACGGCAC
ATGCCTCCACCGTGTTGCACGAGCTTGCCCGCCCGCCGTCGACTAGCTCG
TCCACATCCTTGGGTCTGAGGATTGTCCGCCTACTCCTGGTGGGGACGAT
TGCGGCGCTTCTCTGGACTTCTCGGTGTGCGGGCGACCAGGGCTTTCTTA
ATGAAAAGAATATTGCTCTAGCCCTCTCCCCCTCCGCCTGCATCTTGGGG
GGCTTCACAGTTGTAGTTCTGACGCTGGCCCACTGGGTCCTGGCTTTGCT
GGAGCAGCACCATGTTGAAGCAGAATCGGTGCTCCTCATTAAGGACCTTG
GCGTGCAGCTTCAAACGCGCTACACAAGCGGCCGGGAGGAGTGTGAGGTT
AGTAGCAGAAAGGAGATGAAGCATATTTTCCATGTTGACGATTCAATATG
TTCTATCCTATTTAATTGTTATGTAATACATTATAGTTTGTGGACTTAGG
CCGGGTGCAGGCGGTGGTGATCAATGAAGGTATCACACTGCATCGCGTGG
TTTACTACCTAGCCTTTGTCGTGGAAGGCCGGGACACTCTGCTGGTGGGA
TTCCAGGTTAAGTAGGGAGGAAGAGAATGGGTTTGGGGACCTATGTGGGA
TTGAAAGGATTCACATGACGTGGCACCTTTCTTCAGTCAGAAGGCTGCAC
AAAAGGAAGAAGAAGCACTCTTTTTCTGAAGTTGCTCAGCAAGTCATCTC
TTCTATGATCAATCCTATCAAGAATTACCGGCTCATTTTGCACACACTCA
CCTACAGCATCTGAAGCCCTGCCTGGACGACTTGCTGCCCGTTTATCACA
GCGCCCGGGCCATCGTAGAAGCCCATATCAAGCACGTCGACGTGGCAGCA
GGATGGACAGCGTTGAAGCAGAGGGAGGGAGGAGGGAGGAGTGAAGGGGA
TTTGAAAGATAATAAGTCTTATTAAGTGAAAGCATAACTAAGTTCAGAAT
CATAAGAAATTACAAAGAAAAAATATGCTCTTGAATGACGACACTTGTGC
ACCCTATCGTTTGGAATGCTCAAAGTCAATTTATG
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protein sequence of NO16G02280.3

>NO16G02280.3-protein ID=NO16G02280.3-protein|Name=NO16G02280.3|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MPSKKGRLVYRRTAHASTVLHELARPPSTSSSTSLGLRIVRLLLVGTIAA
LLWTSRCAGDQGFLNEKNIALALSPSACILGGFTVVVLTLAHWVLALLEQ
HHVEAESVLLIKDLGVQLQTRYTSGREECEVSSRKEMKHIFHVDDSICSI
LFNCYVIHYSLWT*
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mRNA from alignment at chr16:661921..664048+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02280.3 ID=NO16G02280.3|Name=NO16G02280.3|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp|location=Sequence derived from alignment at chr16:661921..664048+ (Nannochloropsis oceanica)
CTCAACTTATCACTCGATCGATTCCTCAATTAATTATATTTGTGCCTTCC
CCTTCTTCGACACGGTCGCGGACGGCTTTTTCTATTAGGTAGAGGGCAAC
AGGTGAGAGAAAGACAACTGCCTGAGATGCACCATACGCCTCTCCGTGGT
CACTGCCGCGCTCGTACCTACCCTCGATAAGCCTTTTGTATTAGCTATAC
CAAAAAATATTCCATTAAAAAGAAAGTTGCGACCGCCAGACCTGAGTTAT
CTCAATTCAAGGCCTTCCGTTTAATCCTTGAGCGACCACGGCCTTGTTAT
ACAGCGCATCAAGTGCGTAAAAATTGTACCTCTGCGGCATCTATTATTAT
CTGACGCCACAACCCTTCAAACAGCGAGCCTTCCTATCTAAAGTATTAAT
AGATTTTTAGCTATAGTAGTATTATTTGCATAGCATGTCGTAAAGATGAT
TAATAGAAACTCATGGCCACTATAGGAGGGCAGGCCACTGCCTCATACTC
CTCTTCCACAAATAATACGCTCTTCCCTCTAATGTACTTCCGCACACGTT
ACCCGCTCGCTACACACACAGGCAACGTAGCAAGCACCGCGCGAATGGTG
CTCTACGATGCCTAGCAAAAAGGGACGCTTAGTGTACCGCAGGACGGCAC
ATGCCTCCACCGTGTTGCACGAGCTTGCCCGCCCGCCGTCGACTAGCTCG
TCCACATCCTTGGGTCTGAGGTACGTAAGAGAGGACTACAATTTATCCTT
CCAACCTCGGGCTTAGATTACCTAAAAAATGGACGCAAGACCCAATTTAT
TGAAACTCAACTAGGCCGCCATCACACTTAGGATTGTCCGCCTACTCCTG
GTGGGGACGATTGCGGCGCTTCTCTGGACTTCTCGGTGTGCGGGCGACCA
GGGCTTTCTTAATGAAAAGGTACGGGAAAAAGAGGGAAAAGGGGAGGAAC
CGGGAAGAGTCCATCGAAGCAATAAATCCCCAAACGAGAGGCCATTCTCA
GATAGCCTGTTTCGAAAAACATATAGAATATTGCTCTAGCCCTCTCCCCC
TCCGCCTGCATCTTGGGGGGCTTCACAGTTGTAGTTCTGACGCTGGCCCA
CTGGGTCCTGGCTTTGCTGGAGCAGCACCATGTTGAAGCAGGTGACTGAT
GGAAAGAGGATTGGATGCAGACGATGGTGGCGAGGTGTGGTCGGGGGAGA
GCAATGGGGGGGGGGAAATGCTCGCCGGGGAGTCGTTATTGCGCATATGT
TGTTCTTGGGTGATTGCTCCACTGGATGCACCAGAAATGACCTTTATGTT
GAATACAAAGTCATTTCCTTCTCGCGCGTCATTCTTAACACCGCTTTCAT
CTACTTCTCATTTCAGAATCGGTGCTCCTCATTAAGGACCTTGGCGTGCA
GCTTCAAACGCGCTACACAAGCGGCCGGGAGGAGTGTGAGGTTAGTAGCA
GAAAGGAGATGAAGCATATTTTCCATGTTGACGATTCAATATGTTCTATC
CTATTTAATTGTTATGTAATACATTATAGTTTGTGGACTTAGGCCGGGTG
CAGGCGGTGGTGATCAATGAAGGTATCACACTGCATCGCGTGGTTTACTA
CCTAGCCTTTGTCGTGGAAGGCCGGGACACTCTGCTGGTGGGATTCCAGG
TTAAGTAGGGAGGAAGAGAATGGGTTTGGGGACCTATGTGGGATTGAAAG
GATTCACATGACGTGGCACCTTTCTTCAGTCAGAAGGCTGCACAAAAGGA
AGAAGAAGCACTCTTTTTCTGAAGTTGCTCAGCAAGTCATCTCTTCTATG
ATCAATCCTATCAAGAATTACCGGCTCATTTTGCACACACTCACCTACAG
CATCTGAAGCCCTGCCTGGACGACTTGCTGCCCGTTTATCACAGCGCCCG
GGCCATCGTAGAAGCCCATATCAAGCACGTCGACGTGGCAGCAGGATGGA
CAGCGTTGAAGCAGAGGGAGGGAGGAGGGAGGAGTGAAGGGGATTTGAAA
GATAATAAGTCTTATTAAGTGAAAGCATAACTAAGTTCAGAATCATAAGA
AATTACAAAGAAAAAATATGCTCTTGAATGACGACACTTGTGCACCCTAT
CGTTTGGAATGCTCAAAGTCAATTTATG
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Coding sequence (CDS) from alignment at chr16:661921..664048+

>NO16G02280.3 ID=NO16G02280.3|Name=NO16G02280.3|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at chr16:661921..664048+ (Nannochloropsis oceanica)
ATGCCTAGCAAAAAGGGACGCTTAGTGTACCGCAGGACGGCACATGCCTC
CACCGTGTTGCACGAGCTTGCCCGCCCGCCGTCGACTAGCTCGTCCACAT
CCTTGGGTCTGAGGATTGTCCGCCTACTCCTGGTGGGGACGATTGCGGCG
CTTCTCTGGACTTCTCGGTGTGCGGGCGACCAGGGCTTTCTTAATGAAAA
GAATATTGCTCTAGCCCTCTCCCCCTCCGCCTGCATCTTGGGGGGCTTCA
CAGTTGTAGTTCTGACGCTGGCCCACTGGGTCCTGGCTTTGCTGGAGCAG
CACCATGTTGAAGCAGAATCGGTGCTCCTCATTAAGGACCTTGGCGTGCA
GCTTCAAACGCGCTACACAAGCGGCCGGGAGGAGTGTGAGGTTAGTAGCA
GAAAGGAGATGAAGCATATTTTCCATGTTGACGATTCAATATGTTCTATC
CTATTTAATTGTTATGTAATACATTATAGTTTGTGGACTTAG
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Synonyms
Publications