NO16G02280, NO16G02280 (gene) Nannochloropsis oceanica

Overview
NameNO16G02280
Unique NameNO16G02280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2128
Alignment locationchr16:661921..664048 +

Link to JBrowse

Properties
Property NameValue
DescriptionPhosphatidylinositol n-acetylglucosaminyltransferase subunit h
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:661921..664048 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0017176phosphatidylinositol N-acetylglucosaminyltransferase activity
GO:0017176phosphatidylinositol N-acetylglucosaminyltransferase activity
GO:0016757transferase activity, transferring glycosyl groups
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR019328GPI-GlcNAc_Trfase_PIG-H_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO16G02280 vs. NCBI_GenBank
Match: EWM23923.1 (phosphatidylinositol n-acetylglucosaminyltransferase subunit h [Nannochloropsis gaditana])

HSP 1 Score: 80.9 bits (198), Expect = 4.100e-12
Identity = 53/127 (41.73%), Postives = 73/127 (57.48%), Query Frame = 0 
Query:    4 KKGRLVYRRTAHASTVLHELARPPSTSSSTSLGLRIVRLLLVGTIAALLWTSRCAGDQGFLNEKNIALALSPSACILGGFTVVVLTLAHWVLALLEQHHVEAESVLLIKDLGVQLQTRYTSGREECE 131
            KK  L+YR   HA+  LHE AR  S  S+       V   L  T   +L  +   G+  + + K+  LALSP   ILGGF  VV  L   + + ++Q ++E ES+LLI DLG+QLQTRYT+G+E+ E
Sbjct:   14 KKPELLYRGKKHAAICLHEFARRSSPGSTLFSKRAFVSRSLRPTAIVVLIAAFLGGN--YADVKSFFLALSPWIYILGGFASVVFALTRLISSHIKQCNIETESMLLINDLGLQLQTRYTNGQEKSE 138
The following BLAST results are available for this feature:
BLAST of NO16G02280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23923.14.100e-1241.73phosphatidylinositol n-acetylglucosaminyltransfera... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003191NSK003191Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02280.1NO16G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO16G02280.2NO16G02280.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO16G02280.3NO16G02280.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593820gene_6122Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100082g8gene6541Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02280.1NO16G02280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO16G02280.2NO16G02280.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO16G02280.3NO16G02280.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02280 ID=NO16G02280|Name=NO16G02280|organism=Nannochloropsis oceanica|type=gene|length=2128bp
CTCAACTTATCACTCGATCGATTCCTCAATTAATTATATTTGTGCCTTCC
CCTTCTTCGACACGGTCGCGGACGGCTTTTTCTATTAGGTAGAGGGCAAC
AGGTGAGAGAAAGACAACTGCCTGAGATGCACCATACGCCTCTCCGTGGT
CACTGCCGCGCTCGTACCTACCCTCGATAAGCCTTTTGTATTAGCTATAC
CAAAAAATATTCCATTAAAAAGAAAGTTGCGACCGCCAGACCTGAGTTAT
CTCAATTCAAGGCCTTCCGTTTAATCCTTGAGCGACCACGGCCTTGTTAT
ACAGCGCATCAAGTGCGTAAAAATTGTACCTCTGCGGCATCTATTATTAT
CTGACGCCACAACCCTTCAAACAGCGAGCCTTCCTATCTAAAGTATTAAT
AGATTTTTAGCTATAGTAGTATTATTTGCATAGCATGTCGTAAAGATGAT
TAATAGAAACTCATGGCCACTATAGGAGGGCAGGCCACTGCCTCATACTC
CTCTTCCACAAATAATACGCTCTTCCCTCTAATGTACTTCCGCACACGTT
ACCCGCTCGCTACACACACAGGCAACGTAGCAAGCACCGCGCGAATGGTG
CTCTACGATGCCTAGCAAAAAGGGACGCTTAGTGTACCGCAGGACGGCAC
ATGCCTCCACCGTGTTGCACGAGCTTGCCCGCCCGCCGTCGACTAGCTCG
TCCACATCCTTGGGTCTGAGgtacgtaagagaggactacaatttatcctt
ccaacctcgggcttagattacctaaaaaatggacgcaagacccaatttat
tgaaactcaactaggccgccatcacacttagGATTGTCCGCCTACTCCTG
GTGGGGACGATTGCGGCGCTTCTCTGGACTTCTCGGTGTGCGGGCGACCA
GGGCTTTCTTAATGAAAAGgtacgggaaaaagagggaaaaggggaggaac
cgggaagagtccatcgaagcaataaatccccaaacgagaggccattctca
gatagcctgtttcgaaaaacatatagAATATTGCTCTAGCCCTCTCCCCC
TCCGCCTGCATCTTGGGGGGCTTCACAGTTGTAGTTCTGACGCTGGCCCA
CTGGGTCCTGGCTTTGCTGGAGCAGCACCATGTTGAAGCAGgtgactgat
ggaaagaggattggatgcagacgatggtggcgaggtgtggtcgggggaga
gcaatggggggggggaaatgctcgccggggagtcgttattgcgcatatgt
tgttcttgggtgattgctccactggatgcaccagaaatgacctttatgtt
gaatacaaagtcatttccttctcgcgcgtcattcttaacaccgctttcat
ctacttctcatttcagAATCGGTGCTCCTCATTAAGGACCTTGGCGTGCA
GCTTCAAACGCGCTACACAAGCGGCCGGGAGGAGTGTGAGgttagtagca
gaaaggagatgaagcatattttccatgttgacgattcaatatgttctatc
ctatttaattgttatgtaatacattatagTTTGTGGACTTAGGCCGGGTG
CAGGCGGTGGTGATCAATGAAGGTATCACACTGCATCGCGTGGTTTACTA
CCTAGCCTTTGTCGTGGAAGGCCGGGACACTCTGCTGGTGGGATTCCAGg
ttaagtagggaggaagagaatgggtttggggacctatgtgggattgaaag
gattcacatgacgtggcacctttcttcagtcagaaggctgcacaaaagga
agaagaagcactctttttctgaagttgctcagcaagtcatctcttctatg
atcaatcctatcaagaattaccggctcattttgcacacactcacctacag
CATCTGAAGCCCTGCCTGGACGACTTGCTGCCCGTTTATCACAGCGCCCG
GGCCATCGTAGAAGCCCATATCAAGCACGTCGACGTGGCAGCAGGATGGA
CAGCGTTGAAGCAGAGGGAGGGAGGAGGGAGGAGTGAAGGGGATTTGAAA
GATAATAAGTCTTATTAAGTGAAAGCATAACTAAGTTCAGAATCATAAGA
AATTACAAAGAAAAAATATGCTCTTGAATGACGACACTTGTGCACCCTAT
CGTTTGGAATGCTCAAAGTCAATTTATG
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protein sequence of NO16G02280.1

>NO16G02280.1-protein ID=NO16G02280.1-protein|Name=NO16G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MPSKKGRLVYRRTAHASTVLHELARPPSTSSSTSLGLRIVRLLLVGTIAA
LLWTSRCAGDQGFLNEKNIALALSPSACILGGFTVVVLTLAHWVLALLEQ
HHVEAESVLLIKDLGVQLQTRYTSGREECEFVDLGRVQAVVINEGITLHR
VVYYLAFVVEGRDTLLVGFQHLKPCLDDLLPVYHSARAIVEAHIKHVDVA
AGWTALKQREGGGRSEGDLKDNKSY*
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protein sequence of NO16G02280.2

>NO16G02280.2-protein ID=NO16G02280.2-protein|Name=NO16G02280.2|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MPSKKGRLVYRRTAHASTVLHELARPPSTSSSTSLGLRIVRLLLVGTIAA
LLWTSRCAGDQGFLNEKNIALALSPSACILGGFTVVVLTLAHWVLALLEQ
HHVEAESVLLIKDLGVQLQTRYTSGREECEFVDLGRVQAVVINEGITLHR
VVYYLAFVVEGRDTLLVGFQVK*
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protein sequence of NO16G02280.3

>NO16G02280.3-protein ID=NO16G02280.3-protein|Name=NO16G02280.3|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MPSKKGRLVYRRTAHASTVLHELARPPSTSSSTSLGLRIVRLLLVGTIAA
LLWTSRCAGDQGFLNEKNIALALSPSACILGGFTVVVLTLAHWVLALLEQ
HHVEAESVLLIKDLGVQLQTRYTSGREECEVSSRKEMKHIFHVDDSICSI
LFNCYVIHYSLWT*
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Synonyms
Publications