NO16G01990.1, NO16G01990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01990.1
Unique NameNO16G01990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1151
Alignment locationchr16:584328..585894 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:584328..585894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01990.1 vs.
Match: EWM23891.1 (Protein of unknown function DUF501 [Nannochloropsis gaditana])

HSP 1 Score: 362.1 bits (928), Expect = 2.100e-96
Identity = 194/327 (59.33%), Postives = 240/327 (73.39%), Query Frame = 0 
Query:   30 TKFLGFVRAFSSSASHIVVSLSQQRQQQYQQQRQQQHSNSRKRAPVSSSQRTAAFSTSSFSSFPTK-----EIFEIPPFEPTPATAKDLACIEDRQLLHPITCAGGPRQLCSHGFPQAFVFHPSKTTLNSGMFRLCCPLLVKAVDEYEAKGALREWNKKLENSPEMQREFRRVNARHSAIRRSFVEPEHLAPYLEKMGKEGVEQILASGIAGVSPEKTEDLKCLHAHLADYLCTHDNFIGKEIYEYLERTRNVPVTGSSTCWQQCDSSFERTEDSWWYTPIKNKQKLRSKYHRRTARKQELKGKEGEAEREGVEEKGEK--KREERG 350
            +K LGF  A  S   ++   LS ++   + +  Q+     RKR     S  +AAF+ SS  S         + F+IPPF PTPA+ +D+ACIE RQL HPITCAGGPRQ C+HGFPQAF+FHP+KTT NSG+FRL CPLLVKAVDE+EA+G L+E+N+KLE SP MQREFRRVNARHSAIRR  V+PE L  Y+EK+G+ GVEQILASGIAGVSP KT DLKCLHAHLADYLCTHDN IG+E+YE+L   R + V G++ CWQQC+ SFERT  SWWY P+KNKQKLRS+YHRRTAR++E + +  +   +G E+  +K    E+RG
Sbjct:   13 SKVLGFGHALRS-LFNVAAPLSLEQGAHFSRT-QKPSDKRRKRLSQVLSVSSAAFTPSSTGSKAATAAIDPDHFDIPPFRPTPASDEDIACIEQRQLGHPITCAGGPRQRCAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQGGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCTHDNAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRRTARRREHRERGVDEYGDGEEDARQKGSNEEQRG 337
The following BLAST results are available for this feature:
BLAST of NO16G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23891.12.100e-9659.33Protein of unknown function DUF501 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01990NO16G01990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01990.1NO16G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01990.1.cds1NO16G01990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01990.1.cds2NO16G01990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01990.1.cds3NO16G01990.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01990.1.cds4NO16G01990.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01990.1 ID=NO16G01990.1|Name=NO16G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1151bp
ACAGGCATGCGTCGCGCGTCACCGCCTTACATTGCCGTGCTTCTTCTCCT
TGTTATTGCCATGTCTGCCTACAGTCTCACAAGACCCACAGTCACAAAAT
TCCTGGGCTTTGTGCGCGCTTTCTCGTCCTCTGCTTCTCATATCGTCGTG
TCTCTGTCGCAGCAGCGGCAGCAGCAGTATCAGCAGCAGCGGCAGCAGCA
GCATTCGAACAGTAGAAAGCGAGCCCCAGTCTCATCTTCACAGCGAACCG
CCGCCTTTTCCACCTCTTCTTTTTCCTCTTTTCCGACAAAAGAGATCTTC
GAAATTCCCCCTTTCGAGCCAACGCCCGCTACAGCCAAGGACTTAGCATG
CATCGAAGACCGGCAGCTCTTGCACCCCATCACCTGTGCGGGCGGACCTC
GACAATTGTGCTCGCATGGCTTCCCGCAAGCCTTTGTTTTTCACCCATCT
AAGACAACATTAAATTCGGGCATGTTTCGATTGTGCTGCCCGTTGTTGGT
CAAGGCGGTGGATGAGTACGAGGCGAAGGGTGCCCTCCGTGAGTGGAACA
AGAAACTCGAAAACTCTCCAGAAATGCAGAGAGAGTTCCGGCGGGTCAAT
GCACGACATAGTGCCATTCGCAGGAGTTTCGTGGAACCTGAGCATCTAGC
CCCTTACCTTGAGAAGATGGGAAAAGAGGGGGTGGAGCAAATATTGGCGA
GTGGTATTGCAGGCGTCTCTCCGGAGAAGACGGAAGACTTGAAGTGCTTG
CATGCTCATTTGGCTGATTACTTATGTACACACGACAACTTTATCGGTAA
AGAAATCTACGAATACCTCGAACGCACCCGCAATGTACCCGTTACAGGCA
GCTCGACCTGCTGGCAGCAGTGTGATTCCTCCTTCGAGCGGACGGAGGAC
TCCTGGTGGTACACGCCTATTAAAAATAAACAGAAGCTCCGAAGCAAGTA
CCACAGACGAACGGCTCGCAAGCAGGAGCTGAAAGGGAAGGAGGGAGAGG
CAGAGAGGGAGGGAGTAGAGGAGAAAGGGGAGAAGAAAAGGGAGGAGCGA
GGATGGGAGGGACAGGAGTGGGATGAACGGCAAAGAAGGCCGTAGACAAG
ACGGTGAGAATGAGAATGAAGCAAGCGGTGCGCTCATGCCATGAAAGATA
C
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protein sequence of NO16G01990.1

>NO16G01990.1-protein ID=NO16G01990.1-protein|Name=NO16G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MRRASPPYIAVLLLLVIAMSAYSLTRPTVTKFLGFVRAFSSSASHIVVSL
SQQRQQQYQQQRQQQHSNSRKRAPVSSSQRTAAFSTSSFSSFPTKEIFEI
PPFEPTPATAKDLACIEDRQLLHPITCAGGPRQLCSHGFPQAFVFHPSKT
TLNSGMFRLCCPLLVKAVDEYEAKGALREWNKKLENSPEMQREFRRVNAR
HSAIRRSFVEPEHLAPYLEKMGKEGVEQILASGIAGVSPEKTEDLKCLHA
HLADYLCTHDNFIGKEIYEYLERTRNVPVTGSSTCWQQCDSSFERTEDSW
WYTPIKNKQKLRSKYHRRTARKQELKGKEGEAEREGVEEKGEKKREERGW
EGQEWDERQRRP*
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mRNA from alignment at chr16:584328..585894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01990.1 ID=NO16G01990.1|Name=NO16G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1567bp|location=Sequence derived from alignment at chr16:584328..585894- (Nannochloropsis oceanica)
ACAGGCATGCGTCGCGCGTCACCGCCTTACATTGCCGTGCTTCTTCTCCT
TGTTATTGCCATGTCTGCCTACAGTAAGTTAAATTCTATCATACACCCCC
AACCACACACCTACACCCACACCATTCCCTCCCTCCTTGCCTTGCCATTA
GGTCTCACAAGACCCACAGTCACAAAATTCCTGGGCTTTGTGCGCGCTTT
CTCGTCCTCTGCTTCTCATATCGTCGTGTCTCTGTCGCAGCAGCGGCAGC
AGCAGTATCAGCAGCAGCGGCAGCAGCAGCATTCGAACAGTAGAAAGCGA
GCCCCAGTCTCATCTTCACAGCGAACCGCCGCCTTTTCCACCTCTTCTTT
TTCCTCTTTTCCGACAAAAGAGATCTTCGAAATTCCCCCTTTCGAGCCAA
CGCCCGCTACAGCCAAGGACTTAGCATGCATCGAAGACCGGCAGCTCTTG
CACCCCATCACCTGTGCGGGCGGACCTCGACAATTGTGCTCGCATGGCTT
CCCGCAAGCCTTTGTTTTTCACCCATCTAAGACAACATTAAATTCGGGCA
TGTTTCGATTGTGCTGCCCGTTGTTGGTCAAGGCGGTGGATGAGTACGAG
GCGAAGGGTATGTGCGGAGAGCGTGTGGTGGGCTTGTCAAAGAGTGCTAA
CATCTTCTCGTGTTTGCTTTAGGCGTCAACCATCTACCCTTTTGTCCGTC
TATCCCTAACAGAGCTGTAGATTTAACCAGCACTATATATCCTCTATGTG
TTGTCGCAGGTGCCCTCCGTGAGTGGAACAAGAAACTCGAAAACTCTCCA
GAAATGCAGAGAGAGTTCCGGCGGGTCAATGCACGACATAGTGCCATTCG
CAGGAGTTTCGTGGAACCTGAGCATCTAGCCCCTTACCTTGAGAAGATGG
GAAAAGAGGGGGTGGAGCAAATATTGGCGAGTGGTATTGCAGGCGTCTCT
CCGGAGAAGACGGAAGACTTGAAGTGCTTGCATGCTCATTTGGCTGATTA
CTTATGTACACGTGAGTCCCTCCCTCCATGCTGTCTCTCACTCGTATTCA
TTCTCCTCAATTTGTCCCCTTTTAATCGTCTGTTGGTTTTTCCCCTTCGG
TTCCATACTTTCTCTTTTTTTCACACCCGCTTTAGCGACCACCCAACCCT
CCCTCCCTCCTTCCCTTCCTCCCTCCCGTATTTCCTTCATCCATCAGACG
ACAACTTTATCGGTAAAGAAATCTACGAATACCTCGAACGCACCCGCAAT
GTACCCGTTACAGGCAGCTCGACCTGCTGGCAGCAGTGTGATTCCTCCTT
CGAGCGGACGGAGGACTCCTGGTGGTACACGCCTATTAAAAATAAACAGA
AGCTCCGAAGCAAGTACCACAGACGAACGGCTCGCAAGCAGGAGCTGAAA
GGGAAGGAGGGAGAGGCAGAGAGGGAGGGAGTAGAGGAGAAAGGGGAGAA
GAAAAGGGAGGAGCGAGGATGGGAGGGACAGGAGTGGGATGAACGGCAAA
GAAGGCCGTAGACAAGACGGTGAGAATGAGAATGAAGCAAGCGGTGCGCT
CATGCCATGAAAGATAC
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Coding sequence (CDS) from alignment at chr16:584328..585894-

>NO16G01990.1 ID=NO16G01990.1|Name=NO16G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr16:584328..585894- (Nannochloropsis oceanica)
ATGCGTCGCGCGTCACCGCCTTACATTGCCGTGCTTCTTCTCCTTGTTAT
TGCCATGTCTGCCTACAGTCTCACAAGACCCACAGTCACAAAATTCCTGG
GCTTTGTGCGCGCTTTCTCGTCCTCTGCTTCTCATATCGTCGTGTCTCTG
TCGCAGCAGCGGCAGCAGCAGTATCAGCAGCAGCGGCAGCAGCAGCATTC
GAACAGTAGAAAGCGAGCCCCAGTCTCATCTTCACAGCGAACCGCCGCCT
TTTCCACCTCTTCTTTTTCCTCTTTTCCGACAAAAGAGATCTTCGAAATT
CCCCCTTTCGAGCCAACGCCCGCTACAGCCAAGGACTTAGCATGCATCGA
AGACCGGCAGCTCTTGCACCCCATCACCTGTGCGGGCGGACCTCGACAAT
TGTGCTCGCATGGCTTCCCGCAAGCCTTTGTTTTTCACCCATCTAAGACA
ACATTAAATTCGGGCATGTTTCGATTGTGCTGCCCGTTGTTGGTCAAGGC
GGTGGATGAGTACGAGGCGAAGGGTGCCCTCCGTGAGTGGAACAAGAAAC
TCGAAAACTCTCCAGAAATGCAGAGAGAGTTCCGGCGGGTCAATGCACGA
CATAGTGCCATTCGCAGGAGTTTCGTGGAACCTGAGCATCTAGCCCCTTA
CCTTGAGAAGATGGGAAAAGAGGGGGTGGAGCAAATATTGGCGAGTGGTA
TTGCAGGCGTCTCTCCGGAGAAGACGGAAGACTTGAAGTGCTTGCATGCT
CATTTGGCTGATTACTTATGTACACACGACAACTTTATCGGTAAAGAAAT
CTACGAATACCTCGAACGCACCCGCAATGTACCCGTTACAGGCAGCTCGA
CCTGCTGGCAGCAGTGTGATTCCTCCTTCGAGCGGACGGAGGACTCCTGG
TGGTACACGCCTATTAAAAATAAACAGAAGCTCCGAAGCAAGTACCACAG
ACGAACGGCTCGCAAGCAGGAGCTGAAAGGGAAGGAGGGAGAGGCAGAGA
GGGAGGGAGTAGAGGAGAAAGGGGAGAAGAAAAGGGAGGAGCGAGGATGG
GAGGGACAGGAGTGGGATGAACGGCAAAGAAGGCCGTAG
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Synonyms
Publications