NO16G01900.2, NO16G01900.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01900.2
Unique NameNO16G01900.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1219
Alignment locationchr16:551029..552624 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:551029..552624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01900.2 vs.
Match: XP_005853528.1 (lysine decarboxylase-like protein [Nannochloropsis gaditana CCMP526]; EKU22833.1 lysine decarboxylase-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 436.0 bits (1120), Expect = 7.600e-119
Identity = 209/245 (85.31%), Postives = 228/245 (93.06%), Query Frame = 0 
Query:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAGYLCINGGGKNGCMGALNEGARASGGKIKTVIHGKWIVDKMEFEDVDELVVAQGNNLQERKRLLWETCDCVVVLPGGTGTWDELMEVACHNSVGFGKIPITVINVDGFYDGIIEQIARAASDKILYATPDDTMHVETTVKGALSWSALKVKALKEAGEATGSDAVVLQARTTTFIFQRRHSFLVGVFVGFVGAVLTVGEAALLSQMVKKRLAGR 246
            MRVCVFASSSSLTPEPYLKVARELGEEIAKA YLCINGGGKNGCMGALNEGARA GGKIKTVIHGKW++DKMEFEDVDELV+AQGNNLQERKRLLWETCDCV+VLPGGTGTWDELMEVACHNSVGFGKIPIT++NVDGFYDGII+Q+ARAA DKILYATPDDTMHVETT +GALSW A +V+A +EAG A G DA+VLQ RT TFIFQRRHSFLVG+ +GF GA+LTVGEAALL++  +KR AGR
Sbjct:    1 MRVCVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQAQREAGGALGGDALVLQGRTRTFIFQRRHSFLVGLVLGFAGAILTVGEAALLNRFWRKRQAGR 245
The following BLAST results are available for this feature:
BLAST of NO16G01900.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853528.17.600e-11985.31lysine decarboxylase-like protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01900NO16G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01900.2NO16G01900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01900.2.cds1NO16G01900.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01900.2.cds2NO16G01900.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01900.2.cds3NO16G01900.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01900.2.cds4NO16G01900.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01900.2 ID=NO16G01900.2|Name=NO16G01900.2|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp
TCTTGCTCTGTTCCTGGACTTGTCTTCTCATCAGCCACTATTTTAATTCA
CACTTTCGCCACTACAGGGAGAGCCTATACTCTGCTGCATTGCCCTGTAG
GGAGAGCTCAAGAAGTGGTCGTCGGTAGGAACCCGTCTCCACACCCTCAC
CATTTATTGAGCTTCCCACCATCTCCTCCCCCTGCTGGCGGCCAGGCCAC
TCATTGGGCATTGGCAATGGCAGCGGCCATGCCATGAACGACATACTGCT
CCTCCCGTGTGTGCCAAAGTACATCAACCTTTGGCAGAAATCGTACCTTT
CCCAACCCCCCCAATCTACACCCCCCACACATCCAGGTGGCCAGGCCACC
CTCGTCCCCGACGTCATTCCATTCCACTACTACAACCATGCGCGTCTGCG
TCTTTGCCTCCTCCAGCTCCCTCACGCCCGAGCCCTACCTCAAGGTTGCG
CGGGAGCTCGGAGAGGAAATTGCCAAGGCCGGCTACCTGTGCATCAACGG
CGGGGGCAAGAACGGATGTATGGGGGCGTTGAATGAAGGGGCTCGTGCAT
CAGGAGGCAAGATTAAAACCGTCATCCACGGGAAGTGGATCGTCGACAAA
ATGGAGTTTGAGGACGTTGACGAGCTCGTGGTGGCTCAAGGCAATAATTT
GCAAGAACGCAAAAGATTGCTGTGGGAGACGTGTGACTGTGTGGTGGTCT
TGCCAGGGGGCACCGGCACTTGGGATGAATTGATGGAGGTGGCCTGCCAC
AACTCGGTGGGTTTCGGCAAAATTCCTATCACTGTCATCAATGTCGATGG
CTTCTATGACGGCATCATCGAGCAAATAGCCCGGGCTGCGAGCGATAAAA
TCCTTTATGCCACCCCTGACGACACCATGCATGTCGAGACAACCGTCAAA
GGGGCTCTCTCTTGGTCTGCACTAAAAGTGAAAGCCTTGAAAGAAGCAGG
GGAAGCGACAGGTAGTGATGCGGTGGTTTTACAAGCGCGGACGACGACGT
TCATCTTTCAGAGGCGGCATTCGTTTTTAGTCGGTGTGTTTGTCGGGTTT
GTGGGAGCGGTGTTGACGGTAGGGGAGGCGGCCTTGTTAAGCCAAATGGT
TAAAAAAAGGCTGGCAGGCCGGCTGTCGTAAGATGAAAGAAGGTCGAGAG
ACAGAAAAAGGAGGGATTAAGTCTTTTTGAAATACAATGAAAAGAAAGAA
GGATAAGAAGAACCCTAGG
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protein sequence of NO16G01900.2

>NO16G01900.2-protein ID=NO16G01900.2-protein|Name=NO16G01900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MRVCVFASSSSLTPEPYLKVARELGEEIAKAGYLCINGGGKNGCMGALNE
GARASGGKIKTVIHGKWIVDKMEFEDVDELVVAQGNNLQERKRLLWETCD
CVVVLPGGTGTWDELMEVACHNSVGFGKIPITVINVDGFYDGIIEQIARA
ASDKILYATPDDTMHVETTVKGALSWSALKVKALKEAGEATGSDAVVLQA
RTTTFIFQRRHSFLVGVFVGFVGAVLTVGEAALLSQMVKKRLAGRLS*
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mRNA from alignment at chr16:551029..552624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01900.2 ID=NO16G01900.2|Name=NO16G01900.2|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp|location=Sequence derived from alignment at chr16:551029..552624- (Nannochloropsis oceanica)
TCTTGCTCTGTTCCTGGACTTGTCTTCTCATCAGCCACTATTTTAATTCA
CACTTTCGCCACTACAGGGAGAGCCTATACTCTGCTGCATTGCCCTGTAG
GGAGAGCTCAAGAAGTGGTCGTCGGTAGGAACCCGTCTCCACACCCTCAC
CATTTATTGAGCTTCCCACCATCTCCTCCCCCTGCTGGCGGCCAGGCCAC
TCATTGGGCATTGGCAATGGCAGCGGCCATGCCATGAACGACATACTGCT
CCTCCCGTGTGTGCCAAAGTACATCAACCTTTGGCAGAAATCGTACCTTT
CCCAACCCCCCCAATCTACACCCCCCACACATCCAGGTGGCCAGGCCACC
CTCGTCCCCGACGTCATTCCATTCCACTACTACAACCATGCGCGTCTGCG
TCTTTGCCTCCTCCAGCTCCCTCACGCCCGAGCCCTACCTCAAGGTACGT
ACGATCGAAAAAAGTAAAAAAAAGCGTACACAGACTCTGTGCTTACATTC
GTCCTTTTGCCCTTTCCTTTTTCCTTCCCCAAGGTTGCGCGGGAGCTCGG
AGAGGAAATTGCCAAGGCCGGCTACCTGTGCATCAACGGCGGGGGCAAGA
ACGGATGTATGGGGGCGTTGAATGAAGGGGCTCGTGCATCAGGAGGCAAG
GTACGCCATTTGTAGAATCTAGCTCCAATAACTGACGCTCCGCTCCTGGG
CAGGCTAGCCCACCATGCTCCTGCCTGAACATCCTATCCTCTCGTCTACA
TCAAGCACACACGTCCTCTCTTATCCCCCTTTACCCCTTCCTGTTAACTT
TAGATTAAAACCGTCATCCACGGGAAGTGGATCGTCGACAAAATGGAGTT
TGAGGACGTTGACGAGCTCGTGGTGGCTCAAGGCAATAATTTGCAAGAAC
GCAAAAGATTGCTGTGGGAGACGTGTGACTGTGTGGTGGTCTTGCCAGGG
GGCACCGGCACTTGGGATGAATTGATGGAGGTTAGAAAGGAGGGAGGAAG
AGGAAAAATGGGGAGGGGGGACAGGGGAAAGGAGTACCTTTTCTATTTTA
CCTATTTCATTGCAAATTTCTTTAACCATCTTTTCCTTGTCCCTATTCCT
CCTCATCAATCATAGGTGGCCTGCCACAACTCGGTGGGTTTCGGCAAAAT
TCCTATCACTGTCATCAATGTCGATGGCTTCTATGACGGCATCATCGAGC
AAATAGCCCGGGCTGCGAGCGATAAAATCCTTTATGCCACCCCTGACGAC
ACCATGCATGTCGAGACAACCGTCAAAGGGGCTCTCTCTTGGTCTGCACT
AAAAGTGAAAGCCTTGAAAGAAGCAGGGGAAGCGACAGGTAGTGATGCGG
TGGTTTTACAAGCGCGGACGACGACGTTCATCTTTCAGAGGCGGCATTCG
TTTTTAGTCGGTGTGTTTGTCGGGTTTGTGGGAGCGGTGTTGACGGTAGG
GGAGGCGGCCTTGTTAAGCCAAATGGTTAAAAAAAGGCTGGCAGGCCGGC
TGTCGTAAGATGAAAGAAGGTCGAGAGACAGAAAAAGGAGGGATTAAGTC
TTTTTGAAATACAATGAAAAGAAAGAAGGATAAGAAGAACCCTAGG
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Coding sequence (CDS) from alignment at chr16:551029..552624-

>NO16G01900.2 ID=NO16G01900.2|Name=NO16G01900.2|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at chr16:551029..552624- (Nannochloropsis oceanica)
ATGCGCGTCTGCGTCTTTGCCTCCTCCAGCTCCCTCACGCCCGAGCCCTA
CCTCAAGGTTGCGCGGGAGCTCGGAGAGGAAATTGCCAAGGCCGGCTACC
TGTGCATCAACGGCGGGGGCAAGAACGGATGTATGGGGGCGTTGAATGAA
GGGGCTCGTGCATCAGGAGGCAAGATTAAAACCGTCATCCACGGGAAGTG
GATCGTCGACAAAATGGAGTTTGAGGACGTTGACGAGCTCGTGGTGGCTC
AAGGCAATAATTTGCAAGAACGCAAAAGATTGCTGTGGGAGACGTGTGAC
TGTGTGGTGGTCTTGCCAGGGGGCACCGGCACTTGGGATGAATTGATGGA
GGTGGCCTGCCACAACTCGGTGGGTTTCGGCAAAATTCCTATCACTGTCA
TCAATGTCGATGGCTTCTATGACGGCATCATCGAGCAAATAGCCCGGGCT
GCGAGCGATAAAATCCTTTATGCCACCCCTGACGACACCATGCATGTCGA
GACAACCGTCAAAGGGGCTCTCTCTTGGTCTGCACTAAAAGTGAAAGCCT
TGAAAGAAGCAGGGGAAGCGACAGGTAGTGATGCGGTGGTTTTACAAGCG
CGGACGACGACGTTCATCTTTCAGAGGCGGCATTCGTTTTTAGTCGGTGT
GTTTGTCGGGTTTGTGGGAGCGGTGTTGACGGTAGGGGAGGCGGCCTTGT
TAAGCCAAATGGTTAAAAAAAGGCTGGCAGGCCGGCTGTCGTAA
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Synonyms
Publications