NO16G01640, NO16G01640 (gene) Nannochloropsis oceanica

Overview
NameNO16G01640
Unique NameNO16G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length853
Alignment locationchr16:490778..491630 +

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Properties
Property NameValue
DescriptionRibosomal protein l14
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:490778..491630 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR002784Ribosomal_L14
Homology
BLAST of NO16G01640 vs. NCBI_GenBank
Match: EWM23964.1 (ribosomal protein l14 [Nannochloropsis gaditana])

HSP 1 Score: 233.8 bits (595), Expect = 3.000e-58
Identity = 117/130 (90.00%), Postives = 125/130 (96.15%), Query Frame = 0
Query:    1 MVQLFTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGPDSNVTRQVIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAKAKRAALTDFDRFKLMVARKEKAAIIKKHLK 131
            MV+LFTRFVE+GRVVLVNYGPDYGKLAT+IDVVDGNK+LV+GPDS V RQVIPLKRV LTDLKVKIPRNAR KTLKKAWAT+KIVARWEQTTWCKKL AKAKRAALTDFDRFKLMVARKEK+AIIKKH+K
Sbjct:   63 MVKLFTRFVEIGRVVLVNYGPDYGKLATIIDVVDGNKILVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKLMVARKEKSAIIKKHVK 192          
BLAST of NO16G01640 vs. NCBI_GenBank
Match: XP_009038235.1 (hypothetical protein AURANDRAFT_28296, partial [Aureococcus anophagefferens] >EGB06995.1 hypothetical protein AURANDRAFT_28296, partial [Aureococcus anophagefferens])

HSP 1 Score: 166.8 bits (421), Expect = 4.600e-38
Identity = 83/128 (64.84%), Postives = 104/128 (81.25%), Query Frame = 0
Query:    5 FTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGP--DSNVTRQVIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAKAKRAALTDFDRFKLMVARKEKAAIIKKHLK 131
            F+RFVEVGRVVL+NYGPD GKLAT+ID+VDGNK LV+GP   + V RQVIP KRV LTD+ VKIP+NAR KTL KAW    ++A+W+ ++W KKL AK KRA+LTDF RF+LMVARK+++AI+   +K
Sbjct:    1 FSRFVEVGRVVLINYGPDEGKLATIIDIVDGNKCLVDGPATKTGVARQVIPFKRVALTDIVVKIPKNARQKTLNKAWDEADVLAKWDASSWAKKLAAKKKRASLTDFQRFQLMVARKQRSAIVAAKVK 128          
BLAST of NO16G01640 vs. NCBI_GenBank
Match: XP_002287284.1 (RL14, ribosomal protein 14 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >EED94727.1 RL14, ribosomal protein 14 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 160.6 bits (405), Expect = 3.300e-36
Identity = 82/128 (64.06%), Postives = 104/128 (81.25%), Query Frame = 0
Query:    5 FTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGPD--SNVTRQVIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAKAKRAALTDFDRFKLMVARKEKAAIIKKHLK 131
            F+R+VEVGRVVL+ YGPD GKLATVIDVVD NK LV+GP+  + V RQVIP +R+ LTDL VKI R+ARAK LK AWA    +A+WE ++W KKL+ K+KRAAL+DFDRFK+MVA+K+K+ II + +K
Sbjct:    3 FSRYVEVGRVVLITYGPDAGKLATVIDVVDQNKCLVQGPEEITGVKRQVIPYRRIALTDLTVKIQRSARAKQLKAAWAEGDTLAKWEGSSWAKKLDGKSKRAALSDFDRFKVMVAKKQKSRIIAQKIK 130          
BLAST of NO16G01640 vs. NCBI_GenBank
Match: CBJ28696.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 155.2 bits (391), Expect = 1.400e-34
Identity = 77/123 (62.60%), Postives = 94/123 (76.42%), Query Frame = 0
Query:    5 FTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGPDSNVTRQVIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAKAKRAALTDFDRFKLMVARKEKAAIIKK 128
            FTRFVE+GRVVLVNYGPD GKLA ++DV D NK L+EGPD+ V RQ+IP KR+ LTD K+ I RNAR  T+K A     + A+WE ++W KK   K KRA +TDFDRFK+MVARK+K+AII K
Sbjct:    3 FTRFVEIGRVVLVNYGPDEGKLAVILDVADNNKALIEGPDTGVPRQLIPFKRLALTDFKLPIQRNARIGTIKAAAKEADLYAKWEASSWAKKKAKKVKRAQMTDFDRFKVMVARKQKSAIIAK 125          
BLAST of NO16G01640 vs. NCBI_GenBank
Match: GAX24814.1 (large subunit ribosomal protein L14e [Fistulifera solaris] >GAX17897.1 large subunit ribosomal protein L14e [Fistulifera solaris])

HSP 1 Score: 154.1 bits (388), Expect = 3.100e-34
Identity = 80/126 (63.49%), Postives = 97/126 (76.98%), Query Frame = 0
Query:    5 FTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGPDSNVTRQVIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAKAKRAALTDFDRFKLMVARKEKAAIIKKHLK 131
            F RF+EVGR+VL+NYGP+ GKLATVIDVVD NK L++GP +   RQVI   R+ LTDL VKI RNAR KTL KAW     +A WE+++W KKL AK KRA+L DFDRFK+MVARK+K  II+K +K
Sbjct:    3 FQRFMEVGRIVLINYGPEAGKLATVIDVVDQNKCLIDGPQTG--RQVISFTRIALTDLTVKIQRNARPKTLAKAWEEAGTLAAWEKSSWAKKLIAKKKRASLNDFDRFKVMVARKQKREIIEKKMK 126          
BLAST of NO16G01640 vs. NCBI_GenBank
Match: XP_008911987.1 (hypothetical protein PPTG_15525 [Phytophthora parasitica INRA-310] >ETI32112.1 hypothetical protein F443_20997 [Phytophthora parasitica P1569] >ETK72497.1 hypothetical protein L915_20399 [Phytophthora parasitica] >ETL25955.1 hypothetical protein L916_20259 [Phytophthora parasitica] >ETL79162.1 hypothetical protein L917_20132 [Phytophthora parasitica] >ETM37344.1 hypothetical protein L914_16090 [Phytophthora parasitica] >ETN02772.1 hypothetical protein PPTG_15525 [Phytophthora parasitica INRA-310] >ETO60854.1 hypothetical protein F444_21001 [Phytophthora parasitica P1976] >ETP01965.1 hypothetical protein F441_20864 [Phytophthora parasitica CJ01A1] >ETP30122.1 hypothetical protein F442_20805 [Phytophthora parasitica P10297] >KUF73668.1 60S ribosomal protein L14-2 [Phytophthora nicotianae])

HSP 1 Score: 152.5 bits (384), Expect = 8.900e-34
Identity = 79/125 (63.20%), Postives = 95/125 (76.00%), Query Frame = 0
Query:    5 FTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGPDS--NVTRQVIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAKAKRAALTDFDRFKLMVARKEKAAIIKK 128
            FTRFV +GRVVL+NYGPD GK+AT+IDVVD NK LV+GP S   V R VI  KR+ LTDL V IPR AR KTLKKA A    +A+WE +TW KKL+ K  RA L DFDRFK M+ARK+K++++KK
Sbjct:    3 FTRFVSIGRVVLINYGPDAGKIATIIDVVDENKALVDGPFSVTGVNRHVINFKRLSLTDLTVDIPRQAREKTLKKALAKADTLAKWESSTWAKKLQNKKTRAELNDFDRFKAMIARKQKSSLVKK 127          
BLAST of NO16G01640 vs. NCBI_GenBank
Match: XP_002186290.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65760.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 151.8 bits (382), Expect = 1.500e-33
Identity = 77/127 (60.63%), Postives = 98/127 (77.17%), Query Frame = 0
Query:    5 FTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGPDS--NVTRQVIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAKAKRAALTDFDRFKLMVARKEKAAIIKKHL 130
            F R+VE+GRVVL+NYGP+ GKLAT+ID+VD NK L++GP+S   VTRQVI  KR+ LTDLKV I RNAR K+L KAW     + +WE ++W KKL A+  RA L+DFDRFK+MVA+K+K AII K +
Sbjct:    3 FHRYVELGRVVLINYGPEAGKLATIIDIVDQNKCLIDGPESITGVTRQVISYKRLALTDLKVDIQRNARQKSLLKAWTEADTMNKWESSSWAKKLTARKTRAGLSDFDRFKVMVAKKQKTAIIAKKM 129          
BLAST of NO16G01640 vs. NCBI_GenBank
Match: XP_009527839.1 (hypothetical protein PHYSODRAFT_286116 [Phytophthora sojae] >EGZ18781.1 hypothetical protein PHYSODRAFT_286116 [Phytophthora sojae])

HSP 1 Score: 151.4 bits (381), Expect = 2.000e-33
Identity = 80/125 (64.00%), Postives = 94/125 (75.20%), Query Frame = 0
Query:    5 FTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGPDS--NVTRQVIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAKAKRAALTDFDRFKLMVARKEKAAIIKK 128
            FTRFV VGRVVL+NYGPD GK+AT+IDVVD NK LV+GP S   V R VI  KR+ LTDL V IP  AR KTLKKA A    +A+WE +TW KKL+ K  RA L DFDRFK M+ARK+K+A++KK
Sbjct:    3 FTRFVSVGRVVLINYGPDAGKIATIIDVVDENKALVDGPFSVTGVNRHVINFKRLSLTDLTVDIPLQAREKTLKKALAKADTLAKWESSTWAKKLQNKKTRAELNDFDRFKAMIARKQKSALVKK 127          
BLAST of NO16G01640 vs. NCBI_GenBank
Match: CCA20885.1 (60S ribosomal protein L14 putative [Albugo laibachii Nc14])

HSP 1 Score: 150.2 bits (378), Expect = 4.400e-33
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = 0
Query:    5 FTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGPDS--NVTRQVIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAKAKRAALTDFDRFKLMVARKEKAAIIKKHL 130
            FTRFV +GRV LVNYGPD GK+AT+IDV+D NK L++GP+S   V RQVIP KR+ LTDL V++PR  R KTLK+A     IV +W  T W KKL  K  RA   DFDRFK M+ARK+K+ +IKK L
Sbjct:    3 FTRFVTIGRVALVNYGPDCGKIATIIDVLDENKALIDGPESVTGVRRQVIPFKRLALTDLVVQVPRQPREKTLKQALQKGSIVEKWNNTAWAKKLSKKVTRAQCNDFDRFKTMIARKQKSTLIKKSL 129          
BLAST of NO16G01640 vs. NCBI_GenBank
Match: OQS03429.1 (60S ribosomal protein L14 [Thraustotheca clavata])

HSP 1 Score: 150.2 bits (378), Expect = 4.400e-33
Identity = 79/127 (62.20%), Postives = 94/127 (74.02%), Query Frame = 0
Query:    5 FTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGPDS--NVTRQVIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAKAKRAALTDFDRFKLMVARKEKAAIIKKHL 130
            F+RFV +GRV L+NYGPD GKLAT+IDVVD NK LVEGP S   V R VI  KR+ LTDL VKIPR AR  TLKKA     I+ +W  T W KK++AK  RA L+DFDRFK M+ARK+K+++IKK L
Sbjct:    3 FSRFVTIGRVALINYGPDAGKLATIIDVVDENKCLVEGPYSVTGVNRHVISFKRLALTDLTVKIPRQAREATLKKALVKADILNKWAATAWSKKIQAKKTRAGLSDFDRFKAMIARKQKSSLIKKQL 129          
The following BLAST results are available for this feature:
BLAST of NO16G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23964.13.000e-5890.00ribosomal protein l14 [Nannochloropsis gaditana][more]
XP_009038235.14.600e-3864.84hypothetical protein AURANDRAFT_28296, partial [Au... [more]
XP_002287284.13.300e-3664.06RL14, ribosomal protein 14 60S large ribosomal sub... [more]
CBJ28696.11.400e-3462.60conserved unknown protein [Ectocarpus siliculosus][more]
GAX24814.13.100e-3463.49large subunit ribosomal protein L14e [Fistulifera ... [more]
XP_008911987.18.900e-3463.20hypothetical protein PPTG_15525 [Phytophthora para... [more]
XP_002186290.11.500e-3360.63predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_009527839.12.000e-3364.00hypothetical protein PHYSODRAFT_286116 [Phytophtho... [more]
CCA20885.14.400e-3359.8460S ribosomal protein L14 putative [Albugo laibach... [more]
OQS03429.14.400e-3362.2060S ribosomal protein L14 [Thraustotheca clavata][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003149NSK003149Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01640.1NO16G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593589gene_6046Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g34gene6504Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01640.1NO16G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01640 ID=NO16G01640|Name=NO16G01640|organism=Nannochloropsis oceanica|type=gene|length=853bp
ATGGTTCAGgtaagcgggcgacaaagggaatggtggaggaagaaaagctg
gataggccggaggaggggggaggcgagaagaaaggaggggggacagtcat
gtatgacgaatgctatccgtacgacaacccatcatctccctccccacatt
acaacacagTTGTTCACACGATTTGTGGAGGTCGGCCGGGTAGTGCTAGT
GAACTATGGCCCCGACTATGGCAAGCTGGCCACCGTCATCGACGTGGTGG
ATGGCAACAAGgtgcgtgagagatagtggagcgggtgcagaggttaagtg
atgaatgaggagggtgtatggtgcgagcaattttatattggcggcttatg
ggagcgaggatatggagtgcaatatctcctttctctgccttaaaggcgaa
gggggccacgcacacaagggcaaaagtgctgtcatattacccctttgtgt
caggcgcgtacgtgaaggtgcatattttgcccctcttattagtccactta
tgtggcatatcacccctccaacctccatctcttccccctcctcccccctc
ctctccttcccgccccctcagGTCCTTGTGGAAGGCCCCGACTCGAACGT
GACCCGGCAAGTCATTCCTTTGAAGCGTGTCTACCTTACGGACTTGAAGG
TGAAGATCCCCCGTAATGCGCGTGCCAAGACTCTGAAGAAGGCCTGGGCC
ACGGATAAGATTGTGGCTCGATGGGAGCAGACCACCTGGTGCAAGAAGTT
GGAGGCCAAGGCGAAGCGTGCGGCCCTCACAGACTTCGACCGTTTCAAGC
TCATGGTGGCGCGTAAGGAGAAGGCGGCGATCATCAAGAAGCACCTGAAG
TAG
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protein sequence of NO16G01640.1

>NO16G01640.1-protein ID=NO16G01640.1-protein|Name=NO16G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MVQLFTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGPDSNVTRQ
VIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAK
AKRAALTDFDRFKLMVARKEKAAIIKKHLK*
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Synonyms
Publications