NO16G01630.1, NO16G01630.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G01630.1
Unique Name	NO16G01630.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2142
Alignment location	chr16:488189..490330 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:488189..490330 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO16G01630.1 vs.
Match: EWM23942.1 (hypothetical protein Naga_100027g33 [Nannochloropsis gaditana])

HSP 1 Score: 166.4 bits (420), Expect = 2.900e-37
Identity = 138/430 (32.09%), Postives = 196/430 (45.58%), Query Frame = 0

Query:    1 MEEADTAHLRSLAALAPAVFFPPERCDRQKNHEANLCRLVRSEDPLISHVATGILLKGLRDAKPGSSKGCLTEVLSPYTPSHGRVNIERHRLTNTLEACRRLVEEVCCPEIDPELRHDEKENGVDG----DYLCHTKDMKATKVYIRQVVARALPGWQEAALQSYVVSAAAARGIDAEEGEDVELPLIWVTSLGLVLRRSYHEPEE---EDEDDVEK---------EKEKQCLAKMLLAWCQTCWRVIERVGIGGVEARRQVLELALALLR--EAEGDAQDDDEEERCRRKAEKNVIEGLIALVRCAITKSNSIKKRHRSNLNTEEEWDEEVAVTPTPPVATPPCPLLLPLQAHNLFNTHMALWSKLAKLIIQRRNATDVDAGVGVGAVAVAAAESSCFSSSPSCSSSSSVERWETLFLCLLQSPICEAH 413
            M+  + A LR LA L P+     +  +++K     L  L++S DPL+ H AT +L++ LR AK GSSK  + + L           +ER RLTN LEA RR+VEEVCC        H ++E G++           +  KAT  Y+R+VV +ALP   EAA+QS+  S     G+     ++ ELPL+WV+ LG  L +SY         D   V++         E EK+ L K+L + CQ CW   E V    +E+RR +LELAL LL    A G    D  +E C+       +E LI L              H  ++    E D++ A    PP     C L+ P++  +LF + MALW+   K I+  R                                + S+  WE L L LL SP C +H
Sbjct:    1 MDSRNVADLRWLARLFPSALSSIDE-NQEKREVLCLITLLQSADPLVGHTATSLLVEALRQAKSGSSKALVLDALWHLPDQDRWAALERKRLTNLLEAYRRIVEEVCC-------GHGDREQGLEAPNERKATATCRKDKATGDYVRRVVTQALPTLHEAAVQSFAASVTQDGGL----RDEAELPLVWVSRLGSTLLQSYETEGNTGYNDNHAVQEPFTNRKSTYEVEKRQLNKLLASLCQRCWLATEGVAY-ALESRRHLLELALLLLHSVSASGAENVDALKEECQ------TVEYLIGLC-----------DAHWHDIEV-SECDKQEAKEGKPPA----CSLVRPVRPSDLFVSSMALWTGCVKHIVLGRK-----------------------------RCNGSLPEWEALSLRLLGSPFCRSH 366

The following BLAST results are available for this feature:

BLAST of NO16G01630.1 vs.

BLAST of NO16G01630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23942.1	2.900e-37	32.09	hypothetical protein Naga_100027g33 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G01630	NO16G01630	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G01630.1	NO16G01630.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G01630.1.cds1	NO16G01630.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:488189..490330-
coding sequence from alignment at chr16:488189..490330-

mRNA sequence

>NO16G01630.1 ID=NO16G01630.1|Name=NO16G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2142bp
ACAGTGATTTATCCAGTCCTCGTCTATTATCCTGTGATGCCGCAGGGCTG
TCGGCTACTACCACCACCATAATGCCCCACCGCTGATGGAGGAAGCCGAC
ACGGCCCACCTGCGCTCTTTGGCAGCCCTTGCCCCTGCCGTCTTTTTCCC
TCCTGAACGATGTGACCGACAGAAAAACCACGAAGCGAATTTGTGTCGGC
TGGTTCGTTCAGAAGATCCACTGATAAGTCATGTGGCCACTGGAATTCTG
CTCAAGGGATTGCGGGATGCCAAGCCGGGTTCGTCGAAAGGATGCTTGAC
CGAGGTCTTGAGTCCCTACACTCCGAGTCACGGCCGGGTCAATATCGAGC
GACATCGCCTCACCAATACACTAGAAGCCTGTCGTCGTTTGGTGGAGGAG
GTGTGCTGTCCAGAGATAGACCCGGAGCTAAGGCATGACGAGAAAGAGAA
CGGAGTCGACGGCGATTACTTGTGCCATACAAAAGACATGAAGGCAACAA
AAGTGTACATCCGACAGGTGGTCGCGCGGGCCTTGCCCGGTTGGCAAGAA
GCAGCTTTGCAATCGTATGTTGTTTCTGCGGCGGCTGCGCGAGGAATCGA
TGCAGAGGAGGGCGAGGACGTGGAGTTGCCCCTCATTTGGGTCACCTCGT
TGGGCTTAGTCCTTCGACGGAGCTACCACGAACCCGAAGAAGAAGACGAG
GACGACGTGGAAAAGGAGAAAGAAAAGCAATGTTTAGCAAAAATGCTGCT
GGCTTGGTGTCAGACTTGTTGGCGTGTTATTGAGCGAGTGGGTATAGGAG
GGGTAGAGGCTCGACGACAGGTTCTCGAATTGGCCTTGGCGCTTCTGCGG
GAGGCGGAAGGTGACGCGCAAGATGATGACGAAGAAGAGAGATGTCGACG
AAAGGCAGAGAAAAATGTTATCGAGGGATTGATTGCATTGGTGCGCTGTG
CTATCACCAAGTCAAATTCGATCAAAAAGCGCCACCGCAGCAACCTCAAC
ACCGAAGAAGAATGGGATGAAGAGGTGGCTGTAACACCGACGCCTCCAGT
GGCGACTCCGCCGTGCCCCCTTCTCCTGCCCCTTCAGGCACACAATTTAT
TCAATACTCATATGGCATTGTGGAGCAAGCTAGCCAAGCTGATAATCCAG
CGACGGAATGCCACTGATGTTGATGCTGGTGTTGGTGTTGGTGCTGTTGC
CGTTGCTGCGGCGGAATCGTCTTGCTTCTCCTCTTCCCCCTCCTGTTCCT
CCTCTTCATCGGTAGAGAGGTGGGAGACTCTCTTTCTGTGCTTGTTGCAG
AGCCCTATTTGTGAGGCACATTTCGGGATCCAACGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGAAAAAGAAGAAAAA
GAAGAAGAAGAGCAAGATAGCCGATTAAGACTCCTGCTTGTCGAGAAACT
GGTAGAGGATGATAATAGGCTTATAGGTGTCTTAAAGGACCTGCTCCTCG
TCAACTGGGGGCTTCGGATGCACACACTTTCTTCTGATGAAGGACAGCGG
CTTCTCCCGCCTTTCCTGGCGGGTTCGGACCCTGCCGCGCTACTGTGTAC
TCTACTAGAGAAATTGCCCGATGGAAGTGCGGAGCAATTATTTTTGGATT
TCCTTTTATCGAATGAGACGTGTGCTTTGGAGTACCTTGTCAGGATAACG
AAGTATACTGTGTGGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCGAATGGTTC
ATTCCTTCTTACAGCGACTGAGCCAGCGTCTTGAGTCGTTGGCCTCCAGG
CGGCTTCTTCCTTTTGACCCTTCTGCTCTTCTGGTACGCTTGCGGTCGCT
CCAGGCACCGTGGCACGTGGATGCGTGAGCCGACAGAAAGGCATGGAAGT
TTGTAGATTAATTAAAAGCTTGTATACAGCCAAGGTCGGTAGAATGTAAT
GGAGAAGAGGGAAAGGAAAGCGATGGATGGAGTGTGTGGGTGCCAACACT
TTATTACCACAAGAAGCAGAAGCAATTTTATTCGAGAAGGCG

protein sequence of NO16G01630.1

>NO16G01630.1-protein ID=NO16G01630.1-protein|Name=NO16G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp
MEEADTAHLRSLAALAPAVFFPPERCDRQKNHEANLCRLVRSEDPLISHV
ATGILLKGLRDAKPGSSKGCLTEVLSPYTPSHGRVNIERHRLTNTLEACR
RLVEEVCCPEIDPELRHDEKENGVDGDYLCHTKDMKATKVYIRQVVARAL
PGWQEAALQSYVVSAAAARGIDAEEGEDVELPLIWVTSLGLVLRRSYHEP
EEEDEDDVEKEKEKQCLAKMLLAWCQTCWRVIERVGIGGVEARRQVLELA
LALLREAEGDAQDDDEEERCRRKAEKNVIEGLIALVRCAITKSNSIKKRH
RSNLNTEEEWDEEVAVTPTPPVATPPCPLLLPLQAHNLFNTHMALWSKLA
KLIIQRRNATDVDAGVGVGAVAVAAAESSCFSSSPSCSSSSSVERWETLF
LCLLQSPICEAHFGIQRGGGGGGGGGGGGGGEGGEGGGGGGGGGGGGAGG
EKEEKEEEEQDSRLRLLLVEKLVEDDNRLIGVLKDLLLVNWGLRMHTLSS
DEGQRLLPPFLAGSDPAALLCTLLEKLPDGSAEQLFLDFLLSNETCALEY
LVRITKYTVWQQQQQQQQQQQQQQQQQQQQQQQQQRMVHSFLQRLSQRLE
SLASRRLLPFDPSALLVRLRSLQAPWHVDA*

mRNA from alignment at chr16:488189..490330-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G01630.1 ID=NO16G01630.1|Name=NO16G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2142bp|location=Sequence derived from alignment at chr16:488189..490330- (Nannochloropsis oceanica)
ACAGTGATTTATCCAGTCCTCGTCTATTATCCTGTGATGCCGCAGGGCTG
TCGGCTACTACCACCACCATAATGCCCCACCGCTGATGGAGGAAGCCGAC
ACGGCCCACCTGCGCTCTTTGGCAGCCCTTGCCCCTGCCGTCTTTTTCCC
TCCTGAACGATGTGACCGACAGAAAAACCACGAAGCGAATTTGTGTCGGC
TGGTTCGTTCAGAAGATCCACTGATAAGTCATGTGGCCACTGGAATTCTG
CTCAAGGGATTGCGGGATGCCAAGCCGGGTTCGTCGAAAGGATGCTTGAC
CGAGGTCTTGAGTCCCTACACTCCGAGTCACGGCCGGGTCAATATCGAGC
GACATCGCCTCACCAATACACTAGAAGCCTGTCGTCGTTTGGTGGAGGAG
GTGTGCTGTCCAGAGATAGACCCGGAGCTAAGGCATGACGAGAAAGAGAA
CGGAGTCGACGGCGATTACTTGTGCCATACAAAAGACATGAAGGCAACAA
AAGTGTACATCCGACAGGTGGTCGCGCGGGCCTTGCCCGGTTGGCAAGAA
GCAGCTTTGCAATCGTATGTTGTTTCTGCGGCGGCTGCGCGAGGAATCGA
TGCAGAGGAGGGCGAGGACGTGGAGTTGCCCCTCATTTGGGTCACCTCGT
TGGGCTTAGTCCTTCGACGGAGCTACCACGAACCCGAAGAAGAAGACGAG
GACGACGTGGAAAAGGAGAAAGAAAAGCAATGTTTAGCAAAAATGCTGCT
GGCTTGGTGTCAGACTTGTTGGCGTGTTATTGAGCGAGTGGGTATAGGAG
GGGTAGAGGCTCGACGACAGGTTCTCGAATTGGCCTTGGCGCTTCTGCGG
GAGGCGGAAGGTGACGCGCAAGATGATGACGAAGAAGAGAGATGTCGACG
AAAGGCAGAGAAAAATGTTATCGAGGGATTGATTGCATTGGTGCGCTGTG
CTATCACCAAGTCAAATTCGATCAAAAAGCGCCACCGCAGCAACCTCAAC
ACCGAAGAAGAATGGGATGAAGAGGTGGCTGTAACACCGACGCCTCCAGT
GGCGACTCCGCCGTGCCCCCTTCTCCTGCCCCTTCAGGCACACAATTTAT
TCAATACTCATATGGCATTGTGGAGCAAGCTAGCCAAGCTGATAATCCAG
CGACGGAATGCCACTGATGTTGATGCTGGTGTTGGTGTTGGTGCTGTTGC
CGTTGCTGCGGCGGAATCGTCTTGCTTCTCCTCTTCCCCCTCCTGTTCCT
CCTCTTCATCGGTAGAGAGGTGGGAGACTCTCTTTCTGTGCTTGTTGCAG
AGCCCTATTTGTGAGGCACATTTCGGGATCCAACGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGAAAAAGAAGAAAAA
GAAGAAGAAGAGCAAGATAGCCGATTAAGACTCCTGCTTGTCGAGAAACT
GGTAGAGGATGATAATAGGCTTATAGGTGTCTTAAAGGACCTGCTCCTCG
TCAACTGGGGGCTTCGGATGCACACACTTTCTTCTGATGAAGGACAGCGG
CTTCTCCCGCCTTTCCTGGCGGGTTCGGACCCTGCCGCGCTACTGTGTAC
TCTACTAGAGAAATTGCCCGATGGAAGTGCGGAGCAATTATTTTTGGATT
TCCTTTTATCGAATGAGACGTGTGCTTTGGAGTACCTTGTCAGGATAACG
AAGTATACTGTGTGGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCGAATGGTTC
ATTCCTTCTTACAGCGACTGAGCCAGCGTCTTGAGTCGTTGGCCTCCAGG
CGGCTTCTTCCTTTTGACCCTTCTGCTCTTCTGGTACGCTTGCGGTCGCT
CCAGGCACCGTGGCACGTGGATGCGTGAGCCGACAGAAAGGCATGGAAGT
TTGTAGATTAATTAAAAGCTTGTATACAGCCAAGGTCGGTAGAATGTAAT
GGAGAAGAGGGAAAGGAAAGCGATGGATGGAGTGTGTGGGTGCCAACACT
TTATTACCACAAGAAGCAGAAGCAATTTTATTCGAGAAGGCG

Coding sequence (CDS) from alignment at chr16:488189..490330-

>NO16G01630.1 ID=NO16G01630.1|Name=NO16G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=1893bp|location=Sequence derived from alignment at chr16:488189..490330- (Nannochloropsis oceanica)
ATGGAGGAAGCCGACACGGCCCACCTGCGCTCTTTGGCAGCCCTTGCCCC
TGCCGTCTTTTTCCCTCCTGAACGATGTGACCGACAGAAAAACCACGAAG
CGAATTTGTGTCGGCTGGTTCGTTCAGAAGATCCACTGATAAGTCATGTG
GCCACTGGAATTCTGCTCAAGGGATTGCGGGATGCCAAGCCGGGTTCGTC
GAAAGGATGCTTGACCGAGGTCTTGAGTCCCTACACTCCGAGTCACGGCC
GGGTCAATATCGAGCGACATCGCCTCACCAATACACTAGAAGCCTGTCGT
CGTTTGGTGGAGGAGGTGTGCTGTCCAGAGATAGACCCGGAGCTAAGGCA
TGACGAGAAAGAGAACGGAGTCGACGGCGATTACTTGTGCCATACAAAAG
ACATGAAGGCAACAAAAGTGTACATCCGACAGGTGGTCGCGCGGGCCTTG
CCCGGTTGGCAAGAAGCAGCTTTGCAATCGTATGTTGTTTCTGCGGCGGC
TGCGCGAGGAATCGATGCAGAGGAGGGCGAGGACGTGGAGTTGCCCCTCA
TTTGGGTCACCTCGTTGGGCTTAGTCCTTCGACGGAGCTACCACGAACCC
GAAGAAGAAGACGAGGACGACGTGGAAAAGGAGAAAGAAAAGCAATGTTT
AGCAAAAATGCTGCTGGCTTGGTGTCAGACTTGTTGGCGTGTTATTGAGC
GAGTGGGTATAGGAGGGGTAGAGGCTCGACGACAGGTTCTCGAATTGGCC
TTGGCGCTTCTGCGGGAGGCGGAAGGTGACGCGCAAGATGATGACGAAGA
AGAGAGATGTCGACGAAAGGCAGAGAAAAATGTTATCGAGGGATTGATTG
CATTGGTGCGCTGTGCTATCACCAAGTCAAATTCGATCAAAAAGCGCCAC
CGCAGCAACCTCAACACCGAAGAAGAATGGGATGAAGAGGTGGCTGTAAC
ACCGACGCCTCCAGTGGCGACTCCGCCGTGCCCCCTTCTCCTGCCCCTTC
AGGCACACAATTTATTCAATACTCATATGGCATTGTGGAGCAAGCTAGCC
AAGCTGATAATCCAGCGACGGAATGCCACTGATGTTGATGCTGGTGTTGG
TGTTGGTGCTGTTGCCGTTGCTGCGGCGGAATCGTCTTGCTTCTCCTCTT
CCCCCTCCTGTTCCTCCTCTTCATCGGTAGAGAGGTGGGAGACTCTCTTT
CTGTGCTTGTTGCAGAGCCCTATTTGTGAGGCACATTTCGGGATCCAACG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGA
GAAAAAGAAGAAAAAGAAGAAGAAGAGCAAGATAGCCGATTAAGACTCCT
GCTTGTCGAGAAACTGGTAGAGGATGATAATAGGCTTATAGGTGTCTTAA
AGGACCTGCTCCTCGTCAACTGGGGGCTTCGGATGCACACACTTTCTTCT
GATGAAGGACAGCGGCTTCTCCCGCCTTTCCTGGCGGGTTCGGACCCTGC
CGCGCTACTGTGTACTCTACTAGAGAAATTGCCCGATGGAAGTGCGGAGC
AATTATTTTTGGATTTCCTTTTATCGAATGAGACGTGTGCTTTGGAGTAC
CTTGTCAGGATAACGAAGTATACTGTGTGGCAACAACAACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGCAGCGAATGGTTCATTCCTTCTTACAGCGACTGAGCCAGCGTCTTGAG
TCGTTGGCCTCCAGGCGGCTTCTTCCTTTTGACCCTTCTGCTCTTCTGGT
ACGCTTGCGGTCGCTCCAGGCACCGTGGCACGTGGATGCGTGA

Synonyms

Publications