NO16G01630, NO16G01630 (gene) Nannochloropsis oceanica

Overview
NameNO16G01630
Unique NameNO16G01630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2142
Alignment locationchr16:488189..490330 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:488189..490330 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024875Protein_Lines
IPR032794LINES_N
Homology
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BLAST of NO16G01630 vs. NCBI_GenBank
Match: EWM23942.1 (hypothetical protein Naga_100027g33 [Nannochloropsis gaditana])

HSP 1 Score: 261.9 bits (668), Expect = 5.000e-66
Identity = 205/643 (31.88%), Postives = 288/643 (44.79%), Query Frame = 0 
Query:    1 MEEADTAHLRSLAALAPAVFFPPERCDRQKNHEANLCRLVRSEDPLISHVATGILLKGLRDAKPGSSKGCLTEVLSPYTPSHGRVNIERHRLTNTLEACRRLVEEVCCPEIDPELRHDEKENGVDG----DYLCHTKDMKATKVYIRQVVARALPGWQEAALQSYVVSAAAARGIDAEEGEDVELPLIWVTSLGLVLRRSYHEXXXXXXXXXXXXXXXXC------------LAKMLLAWCQTCWRVIERVGIGGVEARRQVLELALALLREAEGDAQDXXXXXRCRRKAEKNVIEGLIALVRCAITKSNSIKKRHRSNLNTEEEWDEEVAVTPTPPVATPPCPLLLPLQAHNLFNTHMALWSKLAKLIIQRRNATDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVERWETLFLCLLQSPICEAH-FGIQRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRLLLVEKLVEDDNRLIGVLKDLLLVNWGLRMHTLSSDEGQRLLPPFLAGSDPAALLCTLLEKLPDGSAEQLFLDFLLSNETCALEYLVRITKYTVW---XXXXXXXXXXXXXXXXXXXXXXXXXXXVHSFLQRLSQRLESLASRRLLPFDPSALLVRLRSLQ 624
            M+  + A LR LA L P+     +  +++K     L  L++S DPL+ H AT +L++ LR AK GSSK  + + L           +ER RLTN LEA RR+VEEVCC        H ++E G++           +  KAT  Y+R+VV +ALP   EAA+QS+  S     G+     ++ ELPL+WV+ LG  L +SY                               L K+L + CQ CW   E V    +E+RR +LELAL LL        +         K E   +E LI L              H  ++    E D++ A    PP     C L+ P++  +LF + MALW+   K I+  R   +                               +  WE L L LL SP C +H F + + G                                             R +LV  L E D++L+ VL+D+LLV+W L +   +  EG+RL+  FLA S+P ALL TLL++LP+ SAEQLFL+F LS+ETCALEYL+ + K+ +W                              V +FLQRL QRLE  A++RL PFDP+ L+ RLR L+
Sbjct:    1 MDSRNVADLRWLARLFPSALSSIDE-NQEKREVLCLITLLQSADPLVGHTATSLLVEALRQAKSGSSKALVLDALWHLPDQDRWAALERKRLTNLLEAYRRIVEEVCC-------GHGDREQGLEAPNERKATATCRKDKATGDYVRRVVTQALPTLHEAAVQSFAASVTQDGGL----RDEAELPLVWVSRLGSTLLQSYETEGNTGYNDNHAVQEPFTNRKSTYEVEKRQLNKLLASLCQRCWLATEGVAY-ALESRRHLLELALLLLHSVSASGAENVDAL----KEECQTVEYLIGLC-----------DAHWHDIEV-SECDKQEAKEGKPPA----CSLVRPVRPSDLFVSSMALWTGCVKHIVLGRKRCN-----------------------------GSLPEWEALSLRLLGSPFCRSHVFALTQEGQ--------------------------------------------RRVLVSCLAEYDDKLMSVLRDMLLVHWSLSILREAPSEGKRLVGSFLAASEPIALLHTLLDRLPNESAEQLFLEFFLSDETCALEYLLSLAKFMIWQQQERREAWRHGESSPLKKSGVPHKSPEATVRAFLQRLRQRLEDWAAKRLFPFDPAVLVARLRRLE 537
The following BLAST results are available for this feature:
BLAST of NO16G01630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23942.15.000e-6631.88hypothetical protein Naga_100027g33 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003148NSK003148Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01630.1NO16G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671713gene_6045Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g33gene6503Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01630.1NO16G01630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01630 ID=NO16G01630|Name=NO16G01630|organism=Nannochloropsis oceanica|type=gene|length=2142bp
ACAGTGATTTATCCAGTCCTCGTCTATTATCCTGTGATGCCGCAGGGCTG
TCGGCTACTACCACCACCATAATGCCCCACCGCTGATGGAGGAAGCCGAC
ACGGCCCACCTGCGCTCTTTGGCAGCCCTTGCCCCTGCCGTCTTTTTCCC
TCCTGAACGATGTGACCGACAGAAAAACCACGAAGCGAATTTGTGTCGGC
TGGTTCGTTCAGAAGATCCACTGATAAGTCATGTGGCCACTGGAATTCTG
CTCAAGGGATTGCGGGATGCCAAGCCGGGTTCGTCGAAAGGATGCTTGAC
CGAGGTCTTGAGTCCCTACACTCCGAGTCACGGCCGGGTCAATATCGAGC
GACATCGCCTCACCAATACACTAGAAGCCTGTCGTCGTTTGGTGGAGGAG
GTGTGCTGTCCAGAGATAGACCCGGAGCTAAGGCATGACGAGAAAGAGAA
CGGAGTCGACGGCGATTACTTGTGCCATACAAAAGACATGAAGGCAACAA
AAGTGTACATCCGACAGGTGGTCGCGCGGGCCTTGCCCGGTTGGCAAGAA
GCAGCTTTGCAATCGTATGTTGTTTCTGCGGCGGCTGCGCGAGGAATCGA
TGCAGAGGAGGGCGAGGACGTGGAGTTGCCCCTCATTTGGGTCACCTCGT
TGGGCTTAGTCCTTCGACGGAGCTACCACGAACCCGAAGAAGAAGACGAG
GACGACGTGGAAAAGGAGAAAGAAAAGCAATGTTTAGCAAAAATGCTGCT
GGCTTGGTGTCAGACTTGTTGGCGTGTTATTGAGCGAGTGGGTATAGGAG
GGGTAGAGGCTCGACGACAGGTTCTCGAATTGGCCTTGGCGCTTCTGCGG
GAGGCGGAAGGTGACGCGCAAGATGATGACGAAGAAGAGAGATGTCGACG
AAAGGCAGAGAAAAATGTTATCGAGGGATTGATTGCATTGGTGCGCTGTG
CTATCACCAAGTCAAATTCGATCAAAAAGCGCCACCGCAGCAACCTCAAC
ACCGAAGAAGAATGGGATGAAGAGGTGGCTGTAACACCGACGCCTCCAGT
GGCGACTCCGCCGTGCCCCCTTCTCCTGCCCCTTCAGGCACACAATTTAT
TCAATACTCATATGGCATTGTGGAGCAAGCTAGCCAAGCTGATAATCCAG
CGACGGAATGCCACTGATGTTGATGCTGGTGTTGGTGTTGGTGCTGTTGC
CGTTGCTGCGGCGGAATCGTCTTGCTTCTCCTCTTCCCCCTCCTGTTCCT
CCTCTTCATCGGTAGAGAGGTGGGAGACTCTCTTTCTGTGCTTGTTGCAG
AGCCCTATTTGTGAGGCACATTTCGGGATCCAACGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGAAAAAGAAGAAAAA
GAAGAAGAAGAGCAAGATAGCCGATTAAGACTCCTGCTTGTCGAGAAACT
GGTAGAGGATGATAATAGGCTTATAGGTGTCTTAAAGGACCTGCTCCTCG
TCAACTGGGGGCTTCGGATGCACACACTTTCTTCTGATGAAGGACAGCGG
CTTCTCCCGCCTTTCCTGGCGGGTTCGGACCCTGCCGCGCTACTGTGTAC
TCTACTAGAGAAATTGCCCGATGGAAGTGCGGAGCAATTATTTTTGGATT
TCCTTTTATCGAATGAGACGTGTGCTTTGGAGTACCTTGTCAGGATAACG
AAGTATACTGTGTGGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCGAATGGTTC
ATTCCTTCTTACAGCGACTGAGCCAGCGTCTTGAGTCGTTGGCCTCCAGG
CGGCTTCTTCCTTTTGACCCTTCTGCTCTTCTGGTACGCTTGCGGTCGCT
CCAGGCACCGTGGCACGTGGATGCGTGAGCCGACAGAAAGGCATGGAAGT
TTGTAGATTAATTAAAAGCTTGTATACAGCCAAGGTCGGTAGAATGTAAT
GGAGAAGAGGGAAAGGAAAGCGATGGATGGAGTGTGTGGGTGCCAACACT
TTATTACCACAAGAAGCAGAAGCAATTTTATTCGAGAAGGCG
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protein sequence of NO16G01630.1

>NO16G01630.1-protein ID=NO16G01630.1-protein|Name=NO16G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp
MEEADTAHLRSLAALAPAVFFPPERCDRQKNHEANLCRLVRSEDPLISHV
ATGILLKGLRDAKPGSSKGCLTEVLSPYTPSHGRVNIERHRLTNTLEACR
RLVEEVCCPEIDPELRHDEKENGVDGDYLCHTKDMKATKVYIRQVVARAL
PGWQEAALQSYVVSAAAARGIDAEEGEDVELPLIWVTSLGLVLRRSYHEP
EEEDEDDVEKEKEKQCLAKMLLAWCQTCWRVIERVGIGGVEARRQVLELA
LALLREAEGDAQDDDEEERCRRKAEKNVIEGLIALVRCAITKSNSIKKRH
RSNLNTEEEWDEEVAVTPTPPVATPPCPLLLPLQAHNLFNTHMALWSKLA
KLIIQRRNATDVDAGVGVGAVAVAAAESSCFSSSPSCSSSSSVERWETLF
LCLLQSPICEAHFGIQRGGGGGGGGGGGGGGEGGEGGGGGGGGGGGGAGG
EKEEKEEEEQDSRLRLLLVEKLVEDDNRLIGVLKDLLLVNWGLRMHTLSS
DEGQRLLPPFLAGSDPAALLCTLLEKLPDGSAEQLFLDFLLSNETCALEY
LVRITKYTVWQQQQQQQQQQQQQQQQQQQQQQQQQRMVHSFLQRLSQRLE
SLASRRLLPFDPSALLVRLRSLQAPWHVDA*
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Synonyms
Publications