NO16G01330.1, NO16G01330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01330.1
Unique NameNO16G01330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1545
Alignment locationchr16:407608..409152 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:407608..409152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01330.1 vs.
Match: EWM23990.1 (dynactin subunit 2-like isoform 3 [Nannochloropsis gaditana])

HSP 1 Score: 354.4 bits (908), Expect = 6.100e-94
Identity = 247/512 (48.24%), Postives = 316/512 (61.72%), Query Frame = 0 
Query:    1 MERATEEIFETPDSAADDDSSSSSSSSISSARQFSASQGRRVNSDPENLVPTPLKPDAAFEVFHGKCYNTSSLTDLSGSIAPRPV----CSSQRRRREQQQDPGGAGKKDADGVGNVPETPVERYLRLKGEARELAEEVEALVAAQDEKS-----QHVEAASLWKHLASEVSKLKGDLLNLAEGPERVHLLTQRKSDDGWDGEDKCYDTDISSVAAETDLMEALMHKVDELTNRSSSSSRSSSGSSSVNNKSDCKNSSDKVITSQDQPREDGSSGGVVYELYYDGANNSTSTSGRSSSGRRGLRASSMPQIQHLESRLASLEKIILLSDTSTDGNHSSSSSSSGCRSGEGMSGLVVSTRALPLIEALAQVERQATLLDAGAIETLRQRLVLLKSEWDSFKKERLKLANTLDREAGSHFRRVESVWEMMGRLAPVAGDLPLLVSRLKVLQELHGESLTFARRMGELEEGQGVLRELLAGTKKSVEEVKKSLRENVGEMERNVNEVDKRLRRLM 504
            MER  E +FETPD+      S  +S   S          +   S+P++LVPTPL P AAFEVFHGKC+ T SLT+LSGSIA +      CSS   RR Q Q   G           V E+P ERY+RLKGE  ELAEE+EAL A QD++S     +  EA  LW HLASEVS L+ DLLN+   P+   +L+Q+    G   E    DT ++ VAAE DL++ LM +VDEL  R   ++R   GS   +   D  +S  +   +   P E+    GVVYELYYD AN+S          R    + S  Q+Q LE RLA++EK +L        N  S +++S      GM+GLV+ +R LPL+EA+A+VERQA LLD   +ET+RQRL+LLKSEW++FK+ERL+LA+  DRE+GSHFRRVES+++ M RLAPVA DLP LVSRL+VLQ LH ESL F  R+  +E GQ  LR+LL G   SVE+VKKSL++NV +ME NV  VD RLR LM
Sbjct:    1 MEREEELVFETPDTVECGVESCGNSGGPSRGTLPYLGHDQSPTSNPDDLVPTPLDPAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEV---------VHESPAERYVRLKGETVELAEELEALKAVQDKRSAESGDKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSGGGEEGGSKDT-LARVAAEEDLVQGLMRRVDELAGR---TNRRDKGSERPHKYQDAGHSQSR---ADKGPGEEAE--GVVYELYYD-ANDS----------RHDRASHSAQQLQTLEGRLAAIEKFLL-------SNEESDTATS------GMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLRLASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEGAVTSVEDVKKSLQDNVRQMEENVRSVDVRLRELM 470
The following BLAST results are available for this feature:
BLAST of NO16G01330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23990.16.100e-9448.24dynactin subunit 2-like isoform 3 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01330NO16G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01330.1NO16G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01330.1.cds1NO16G01330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01330.1 ID=NO16G01330.1|Name=NO16G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp
ATGGAACGGGCGACCGAGGAAATCTTCGAGACACCGGATTCAGCGGCAGA
CGACGACAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAGCGCACGTCAAT
TTTCCGCCTCCCAAGGCAGGCGTGTGAACTCGGACCCGGAGAACTTAGTG
CCTACGCCCCTCAAACCCGACGCAGCCTTTGAGGTCTTCCACGGCAAGTG
CTACAACACGTCGTCCTTGACGGATCTGTCAGGTTCTATTGCTCCCCGGC
CTGTATGTTCTTCACAACGGCGTCGGAGAGAGCAGCAGCAGGACCCGGGA
GGAGCAGGGAAGAAGGACGCGGACGGAGTGGGAAACGTGCCTGAGACCCC
CGTGGAGCGTTACCTACGATTAAAGGGCGAGGCAAGAGAGTTGGCGGAGG
AGGTGGAAGCGCTGGTAGCGGCACAAGATGAGAAGAGCCAGCACGTCGAG
GCGGCATCGTTGTGGAAGCATTTGGCCAGCGAGGTGTCTAAGCTCAAGGG
AGACTTACTTAACTTGGCGGAAGGCCCCGAGCGTGTGCATCTCTTGACTC
AGAGAAAAAGTGATGATGGTTGGGACGGGGAGGACAAATGCTATGATACC
GATATTAGTTCTGTCGCTGCGGAGACGGACCTCATGGAAGCTTTGATGCA
CAAGGTCGACGAGCTGACAAACAGGAGTAGTAGTAGTAGCCGCAGCAGCA
GCGGCAGCAGCAGTGTTAACAATAAGAGCGACTGTAAGAATAGCAGCGAC
AAAGTAATCACAAGCCAGGACCAACCAAGAGAAGATGGTAGCTCAGGTGG
CGTGGTTTATGAGCTCTATTACGATGGCGCAAACAACAGCACCAGCACCA
GCGGGCGCAGCAGCAGCGGAAGGAGGGGCCTTCGTGCTTCCTCCATGCCG
CAAATCCAACACCTCGAAAGTCGCCTCGCATCCCTAGAAAAAATCATCCT
ACTCAGTGATACAAGCACCGACGGTAATCACAGCAGTAGCAGCAGCAGCA
GCGGCTGCAGGAGCGGGGAGGGTATGTCGGGCTTGGTGGTATCCACACGA
GCATTACCATTGATAGAGGCGTTGGCGCAAGTAGAGCGACAAGCCACGCT
GCTGGACGCAGGGGCGATTGAAACACTGCGACAGCGCTTGGTGCTCCTCA
AATCTGAATGGGATAGCTTTAAGAAAGAGAGGCTCAAGCTTGCGAATACT
CTGGATAGGGAAGCAGGATCACATTTTCGGAGGGTGGAGAGTGTGTGGGA
GATGATGGGACGGTTGGCGCCGGTGGCGGGCGATTTGCCTCTGTTGGTGA
GCCGGTTGAAGGTGTTACAGGAGCTGCATGGTGAGAGTTTGACGTTCGCA
AGACGGATGGGGGAGTTGGAGGAGGGACAAGGGGTACTGAGAGAGTTGCT
GGCGGGGACGAAGAAGAGCGTGGAGGAGGTGAAGAAGAGTTTGAGGGAGA
ATGTGGGGGAGATGGAGAGGAACGTGAATGAGGTGGATAAGAGGTTACGA
AGGCTAATGCTGCTGGAGGGCGAGGAGGGGGGAGGGAAGGAGTGA
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protein sequence of NO16G01330.1

>NO16G01330.1-protein ID=NO16G01330.1-protein|Name=NO16G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MERATEEIFETPDSAADDDSSSSSSSSISSARQFSASQGRRVNSDPENLV
PTPLKPDAAFEVFHGKCYNTSSLTDLSGSIAPRPVCSSQRRRREQQQDPG
GAGKKDADGVGNVPETPVERYLRLKGEARELAEEVEALVAAQDEKSQHVE
AASLWKHLASEVSKLKGDLLNLAEGPERVHLLTQRKSDDGWDGEDKCYDT
DISSVAAETDLMEALMHKVDELTNRSSSSSRSSSGSSSVNNKSDCKNSSD
KVITSQDQPREDGSSGGVVYELYYDGANNSTSTSGRSSSGRRGLRASSMP
QIQHLESRLASLEKIILLSDTSTDGNHSSSSSSSGCRSGEGMSGLVVSTR
ALPLIEALAQVERQATLLDAGAIETLRQRLVLLKSEWDSFKKERLKLANT
LDREAGSHFRRVESVWEMMGRLAPVAGDLPLLVSRLKVLQELHGESLTFA
RRMGELEEGQGVLRELLAGTKKSVEEVKKSLRENVGEMERNVNEVDKRLR
RLMLLEGEEGGGKE*
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mRNA from alignment at chr16:407608..409152+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01330.1 ID=NO16G01330.1|Name=NO16G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp|location=Sequence derived from alignment at chr16:407608..409152+ (Nannochloropsis oceanica)
ATGGAACGGGCGACCGAGGAAATCTTCGAGACACCGGATTCAGCGGCAGA
CGACGACAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAGCGCACGTCAAT
TTTCCGCCTCCCAAGGCAGGCGTGTGAACTCGGACCCGGAGAACTTAGTG
CCTACGCCCCTCAAACCCGACGCAGCCTTTGAGGTCTTCCACGGCAAGTG
CTACAACACGTCGTCCTTGACGGATCTGTCAGGTTCTATTGCTCCCCGGC
CTGTATGTTCTTCACAACGGCGTCGGAGAGAGCAGCAGCAGGACCCGGGA
GGAGCAGGGAAGAAGGACGCGGACGGAGTGGGAAACGTGCCTGAGACCCC
CGTGGAGCGTTACCTACGATTAAAGGGCGAGGCAAGAGAGTTGGCGGAGG
AGGTGGAAGCGCTGGTAGCGGCACAAGATGAGAAGAGCCAGCACGTCGAG
GCGGCATCGTTGTGGAAGCATTTGGCCAGCGAGGTGTCTAAGCTCAAGGG
AGACTTACTTAACTTGGCGGAAGGCCCCGAGCGTGTGCATCTCTTGACTC
AGAGAAAAAGTGATGATGGTTGGGACGGGGAGGACAAATGCTATGATACC
GATATTAGTTCTGTCGCTGCGGAGACGGACCTCATGGAAGCTTTGATGCA
CAAGGTCGACGAGCTGACAAACAGGAGTAGTAGTAGTAGCCGCAGCAGCA
GCGGCAGCAGCAGTGTTAACAATAAGAGCGACTGTAAGAATAGCAGCGAC
AAAGTAATCACAAGCCAGGACCAACCAAGAGAAGATGGTAGCTCAGGTGG
CGTGGTTTATGAGCTCTATTACGATGGCGCAAACAACAGCACCAGCACCA
GCGGGCGCAGCAGCAGCGGAAGGAGGGGCCTTCGTGCTTCCTCCATGCCG
CAAATCCAACACCTCGAAAGTCGCCTCGCATCCCTAGAAAAAATCATCCT
ACTCAGTGATACAAGCACCGACGGTAATCACAGCAGTAGCAGCAGCAGCA
GCGGCTGCAGGAGCGGGGAGGGTATGTCGGGCTTGGTGGTATCCACACGA
GCATTACCATTGATAGAGGCGTTGGCGCAAGTAGAGCGACAAGCCACGCT
GCTGGACGCAGGGGCGATTGAAACACTGCGACAGCGCTTGGTGCTCCTCA
AATCTGAATGGGATAGCTTTAAGAAAGAGAGGCTCAAGCTTGCGAATACT
CTGGATAGGGAAGCAGGATCACATTTTCGGAGGGTGGAGAGTGTGTGGGA
GATGATGGGACGGTTGGCGCCGGTGGCGGGCGATTTGCCTCTGTTGGTGA
GCCGGTTGAAGGTGTTACAGGAGCTGCATGGTGAGAGTTTGACGTTCGCA
AGACGGATGGGGGAGTTGGAGGAGGGACAAGGGGTACTGAGAGAGTTGCT
GGCGGGGACGAAGAAGAGCGTGGAGGAGGTGAAGAAGAGTTTGAGGGAGA
ATGTGGGGGAGATGGAGAGGAACGTGAATGAGGTGGATAAGAGGTTACGA
AGGCTAATGCTGCTGGAGGGCGAGGAGGGGGGAGGGAAGGAGTGA
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Coding sequence (CDS) from alignment at chr16:407608..409152+

>NO16G01330.1 ID=NO16G01330.1|Name=NO16G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=1545bp|location=Sequence derived from alignment at chr16:407608..409152+ (Nannochloropsis oceanica)
ATGGAACGGGCGACCGAGGAAATCTTCGAGACACCGGATTCAGCGGCAGA
CGACGACAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAGCGCACGTCAAT
TTTCCGCCTCCCAAGGCAGGCGTGTGAACTCGGACCCGGAGAACTTAGTG
CCTACGCCCCTCAAACCCGACGCAGCCTTTGAGGTCTTCCACGGCAAGTG
CTACAACACGTCGTCCTTGACGGATCTGTCAGGTTCTATTGCTCCCCGGC
CTGTATGTTCTTCACAACGGCGTCGGAGAGAGCAGCAGCAGGACCCGGGA
GGAGCAGGGAAGAAGGACGCGGACGGAGTGGGAAACGTGCCTGAGACCCC
CGTGGAGCGTTACCTACGATTAAAGGGCGAGGCAAGAGAGTTGGCGGAGG
AGGTGGAAGCGCTGGTAGCGGCACAAGATGAGAAGAGCCAGCACGTCGAG
GCGGCATCGTTGTGGAAGCATTTGGCCAGCGAGGTGTCTAAGCTCAAGGG
AGACTTACTTAACTTGGCGGAAGGCCCCGAGCGTGTGCATCTCTTGACTC
AGAGAAAAAGTGATGATGGTTGGGACGGGGAGGACAAATGCTATGATACC
GATATTAGTTCTGTCGCTGCGGAGACGGACCTCATGGAAGCTTTGATGCA
CAAGGTCGACGAGCTGACAAACAGGAGTAGTAGTAGTAGCCGCAGCAGCA
GCGGCAGCAGCAGTGTTAACAATAAGAGCGACTGTAAGAATAGCAGCGAC
AAAGTAATCACAAGCCAGGACCAACCAAGAGAAGATGGTAGCTCAGGTGG
CGTGGTTTATGAGCTCTATTACGATGGCGCAAACAACAGCACCAGCACCA
GCGGGCGCAGCAGCAGCGGAAGGAGGGGCCTTCGTGCTTCCTCCATGCCG
CAAATCCAACACCTCGAAAGTCGCCTCGCATCCCTAGAAAAAATCATCCT
ACTCAGTGATACAAGCACCGACGGTAATCACAGCAGTAGCAGCAGCAGCA
GCGGCTGCAGGAGCGGGGAGGGTATGTCGGGCTTGGTGGTATCCACACGA
GCATTACCATTGATAGAGGCGTTGGCGCAAGTAGAGCGACAAGCCACGCT
GCTGGACGCAGGGGCGATTGAAACACTGCGACAGCGCTTGGTGCTCCTCA
AATCTGAATGGGATAGCTTTAAGAAAGAGAGGCTCAAGCTTGCGAATACT
CTGGATAGGGAAGCAGGATCACATTTTCGGAGGGTGGAGAGTGTGTGGGA
GATGATGGGACGGTTGGCGCCGGTGGCGGGCGATTTGCCTCTGTTGGTGA
GCCGGTTGAAGGTGTTACAGGAGCTGCATGGTGAGAGTTTGACGTTCGCA
AGACGGATGGGGGAGTTGGAGGAGGGACAAGGGGTACTGAGAGAGTTGCT
GGCGGGGACGAAGAAGAGCGTGGAGGAGGTGAAGAAGAGTTTGAGGGAGA
ATGTGGGGGAGATGGAGAGGAACGTGAATGAGGTGGATAAGAGGTTACGA
AGGCTAATGCTGCTGGAGGGCGAGGAGGGGGGAGGGAAGGAGTGA
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Synonyms
Publications