NO16G01330, NO16G01330 (gene) Nannochloropsis oceanica

Overview
NameNO16G01330
Unique NameNO16G01330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1545
Alignment locationchr16:407608..409152 +

Link to JBrowse

Properties
Property NameValue
DescriptionDynactin subunit 2-like isoform 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:407608..409152 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005869dynactin complex
GO:0005869dynactin complex
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO:0007017microtubule-based process
Vocabulary: INTERPRO
TermDefinition
IPR028133Dynamitin
Homology
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BLAST of NO16G01330 vs. NCBI_GenBank
Match: EWM23990.1 (dynactin subunit 2-like isoform 3 [Nannochloropsis gaditana])

HSP 1 Score: 291.2 bits (744), Expect = 6.300e-75
Identity = 192/474 (40.51%), Postives = 248/474 (52.32%), Query Frame = 0 
Query:    1 MERATEEIFETPDXXXXXXXXXXXXXXXXXXXQFSASQGRRVNSDPENLVPTPLKPDAAFEVFHGKCYNTSSLTDLSGSIAPRPVCSXXXXXXXXXXXXXXXXKKDADGVGNVPETPVERYLRLKGEARELAEEVEALVAAQDEKS-----QHVEAASLWKHLASEVSKLKGDLLNLAEGPERVHLLTQRKSDDGWDGEDKCYDTDISSVAAETDLMEALMHKVDELTNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRGLRASSMPQIQHLESRLASLEKIILLSDTSTDGNHXXXXXXXGCRSGEGMSGLVVSTRALPLIEALAQVERQATLLDAGAIETLRQRLVLLKSEWDSFKKERLKLANTLDREAGSHFRRVESVWEMMGRLAPVAGDLPLLVSRLKVLQELHGESLTFARRMGELEEGQGVLRELLAG 470
            MER  E +FETPD                          +   S+P++LVPTPL P AAFEVFHGKC+ T SLT+LSGSIA +                    + +      V E+P ERY+RLKGE  ELAEE+EAL A QD++S     +  EA  LW HLASEVS L+ DLLN+   P+   +L+Q+             DT ++ VAAE DL++ LM +VDEL  R                                                                 R    + S  Q+Q LE RLA++EK +L ++ S                  GM+GLV+ +R LPL+EA+A+VERQA LLD   +ET+RQRL+LLKSEW++FK+ERL+LA+  DRE+GSHFRRVES+++ M RLAPVA DLP LVSRL+VLQ LH ESL F  R+  +E GQ  LR+LL G
Sbjct:    1 MEREEELVFETPDTVECGVESCGNSGGPSRGTLPYLGHDQSPTSNPDDLVPTPLDPAAAFEVFHGKCFYTPSLTNLSGSIASKSGLPQGCSSGPSRRWQGQCIEGEV-----VHESPAERYVRLKGETVELAEELEALKAVQDKRSAESGDKGAEATWLWGHLASEVSMLQADLLNMVGDPDHAQVLSQKAGGSXXXXXXXSKDT-LARVAAEEDLVQGLMRRVDELAGR-------------------TNRRDKGSERPHKYQDAGHSQSRADKGPGEEAEGVVYELYYDANDSRHDRASHSAQQLQTLEGRLAAIEKFLLSNEESDTAT-------------SGMAGLVLPSRTLPLLEAVARVERQAALLDPVTVETMRQRLLLLKSEWEAFKRERLRLASFWDRESGSHFRRVESLYDAMERLAPVAADLPHLVSRLRVLQSLHRESLQFKGRLDSVERGQARLRQLLEG 436
The following BLAST results are available for this feature:
BLAST of NO16G01330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23990.16.300e-7540.51dynactin subunit 2-like isoform 3 [Nannochloropsis... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003122NSK003122Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01330.1NO16G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566834gene_6015Nannochloropsis oceanica (N. oceanica CCMP1779)gene
dynBgene6476Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01330.1NO16G01330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01330 ID=NO16G01330|Name=NO16G01330|organism=Nannochloropsis oceanica|type=gene|length=1545bp
ATGGAACGGGCGACCGAGGAAATCTTCGAGACACCGGATTCAGCGGCAGA
CGACGACAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAGCGCACGTCAAT
TTTCCGCCTCCCAAGGCAGGCGTGTGAACTCGGACCCGGAGAACTTAGTG
CCTACGCCCCTCAAACCCGACGCAGCCTTTGAGGTCTTCCACGGCAAGTG
CTACAACACGTCGTCCTTGACGGATCTGTCAGGTTCTATTGCTCCCCGGC
CTGTATGTTCTTCACAACGGCGTCGGAGAGAGCAGCAGCAGGACCCGGGA
GGAGCAGGGAAGAAGGACGCGGACGGAGTGGGAAACGTGCCTGAGACCCC
CGTGGAGCGTTACCTACGATTAAAGGGCGAGGCAAGAGAGTTGGCGGAGG
AGGTGGAAGCGCTGGTAGCGGCACAAGATGAGAAGAGCCAGCACGTCGAG
GCGGCATCGTTGTGGAAGCATTTGGCCAGCGAGGTGTCTAAGCTCAAGGG
AGACTTACTTAACTTGGCGGAAGGCCCCGAGCGTGTGCATCTCTTGACTC
AGAGAAAAAGTGATGATGGTTGGGACGGGGAGGACAAATGCTATGATACC
GATATTAGTTCTGTCGCTGCGGAGACGGACCTCATGGAAGCTTTGATGCA
CAAGGTCGACGAGCTGACAAACAGGAGTAGTAGTAGTAGCCGCAGCAGCA
GCGGCAGCAGCAGTGTTAACAATAAGAGCGACTGTAAGAATAGCAGCGAC
AAAGTAATCACAAGCCAGGACCAACCAAGAGAAGATGGTAGCTCAGGTGG
CGTGGTTTATGAGCTCTATTACGATGGCGCAAACAACAGCACCAGCACCA
GCGGGCGCAGCAGCAGCGGAAGGAGGGGCCTTCGTGCTTCCTCCATGCCG
CAAATCCAACACCTCGAAAGTCGCCTCGCATCCCTAGAAAAAATCATCCT
ACTCAGTGATACAAGCACCGACGGTAATCACAGCAGTAGCAGCAGCAGCA
GCGGCTGCAGGAGCGGGGAGGGTATGTCGGGCTTGGTGGTATCCACACGA
GCATTACCATTGATAGAGGCGTTGGCGCAAGTAGAGCGACAAGCCACGCT
GCTGGACGCAGGGGCGATTGAAACACTGCGACAGCGCTTGGTGCTCCTCA
AATCTGAATGGGATAGCTTTAAGAAAGAGAGGCTCAAGCTTGCGAATACT
CTGGATAGGGAAGCAGGATCACATTTTCGGAGGGTGGAGAGTGTGTGGGA
GATGATGGGACGGTTGGCGCCGGTGGCGGGCGATTTGCCTCTGTTGGTGA
GCCGGTTGAAGGTGTTACAGGAGCTGCATGGTGAGAGTTTGACGTTCGCA
AGACGGATGGGGGAGTTGGAGGAGGGACAAGGGGTACTGAGAGAGTTGCT
GGCGGGGACGAAGAAGAGCGTGGAGGAGGTGAAGAAGAGTTTGAGGGAGA
ATGTGGGGGAGATGGAGAGGAACGTGAATGAGGTGGATAAGAGGTTACGA
AGGCTAATGCTGCTGGAGGGCGAGGAGGGGGGAGGGAAGGAGTGA
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protein sequence of NO16G01330.1

>NO16G01330.1-protein ID=NO16G01330.1-protein|Name=NO16G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MERATEEIFETPDSAADDDSSSSSSSSISSARQFSASQGRRVNSDPENLV
PTPLKPDAAFEVFHGKCYNTSSLTDLSGSIAPRPVCSSQRRRREQQQDPG
GAGKKDADGVGNVPETPVERYLRLKGEARELAEEVEALVAAQDEKSQHVE
AASLWKHLASEVSKLKGDLLNLAEGPERVHLLTQRKSDDGWDGEDKCYDT
DISSVAAETDLMEALMHKVDELTNRSSSSSRSSSGSSSVNNKSDCKNSSD
KVITSQDQPREDGSSGGVVYELYYDGANNSTSTSGRSSSGRRGLRASSMP
QIQHLESRLASLEKIILLSDTSTDGNHSSSSSSSGCRSGEGMSGLVVSTR
ALPLIEALAQVERQATLLDAGAIETLRQRLVLLKSEWDSFKKERLKLANT
LDREAGSHFRRVESVWEMMGRLAPVAGDLPLLVSRLKVLQELHGESLTFA
RRMGELEEGQGVLRELLAGTKKSVEEVKKSLRENVGEMERNVNEVDKRLR
RLMLLEGEEGGGKE*
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Synonyms
Publications