NO16G01250, NO16G01250 (gene) Nannochloropsis oceanica

Overview
NameNO16G01250
Unique NameNO16G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1116
Alignment locationchr16:384907..386022 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:384907..386022 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO16G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01250.1NO16G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593455gene_6007Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01250.1NO16G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01250 ID=NO16G01250|Name=NO16G01250|organism=Nannochloropsis oceanica|type=gene|length=1116bp
AAAAAACGCTGCGAGCTATTTTATTTTGCGTCAATTTGTGTGTATGTGTG
CCTTTTCCATGCCTTCTAATCTTTTTTGTATCCGTTAGCCACATAGCTCT
CCCTGCAGTAATGATCGTCGTCGAACGGCAAGAGTCCTTTTTCGCATCCC
GCCAGTTCCACCAAAGACGGCACGTATCTTTCACACGACCCTCCCCCCGC
CCCCGCCTTCTTCCACGGACTACAACGCTGCCCCAGCAAACTAATGCTCG
AAGCCTGTCTTCTCCTATCCTTGCTTCACGTTCAGTTTTCCAAGCTATAA
GGTCGTTGCGACCCCAATTTTCACGACCACGGCCCGCATGGGCCCTGCCA
GCTCCACAGACAAAAACCATGCACGAGGCGAGCGAACCCCACAAATACGA
GGACAGCGAGACCGAGGCTGAGGTGGAGGCTCTGCTTTCCTTTGCAGAAG
AGCTGGGTGTGGAAGGCTTGGAAGAGGATATGGATGTCCTGGCACCTTCC
CCTTCGCCTCCTTCGCGCCCCTCGCAGGCGTCAACACCATCACCACAAGC
ACGCACTTCCCCGTCAGCGGAAAGACTTCATCAGACTTCCAACTTGGACA
GTTTAACTTCCAAAAGGCAGCCAACACCGCCATGTTCCCCTGTTATTCAA
GCTCTACCTCTTGCAAAATCATCGGCGTTAGGACCAACACGAACATCTGC
CGGCACCATTCATTCCGCACGGTCAGTGGCAGCTCTGATGGAACGCCGCA
CTCTTGCCGCCTTCGTGGCCGCTGAAGACAGGTGCTGACATACAGTGAAA
GAGAGGGGAATGCCACTGTTCCTTGAACACCGCTTATCACCAGTGGTGCG
GCGAAGTAGAGAGGGAGGGAAAGGGGAAGCTGCAGACGTGCAAAACCAGA
AAGAGCGGGAAAGGTTCTTCGGGCAGACAGCAGGAGGACAAGGTGGGGGA
AGGCCTTCGGAGATGCCACGGTTGGTGATAATTGACGAGGAAGGGGGCTT
GCGTCGACAGAGGCGGTTGACACAATTGCCATACTGGCATGAGAACCCAG
CACTGTAGGATATGATTAGATCAAGATAAAATAAAACTGTAGTATAAAAA
AAAGGTTAAGATAAAG
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protein sequence of NO16G01250.1

>NO16G01250.1-protein ID=NO16G01250.1-protein|Name=NO16G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MIVVERQESFFASRQFHQRRHVSFTRPSPRPRLLPRTTTLPQQTNARSLS
SPILASRSVFQAIRSLRPQFSRPRPAWALPAPQTKTMHEASEPHKYEDSE
TEAEVEALLSFAEELGVEGLEEDMDVLAPSPSPPSRPSQASTPSPQARTS
PSAERLHQTSNLDSLTSKRQPTPPCSPVIQALPLAKSSALGPTRTSAGTI
HSARSVAALMERRTLAAFVAAEDRC*
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Synonyms
Publications