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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr16 | genome | chr16:257341..260297 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G00780.1 vs.
Match: XP_005854275.1 (protein atypical group [Nannochloropsis gaditana CCMP526]; EKU22080.1 protein atypical group [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 427.2 bits (1097), Expect = 4.100e-116 Identity = 221/286 (77.27%), Postives = 248/286 (86.71%), Query Frame = 0
Query: 1 MPRLHPAAVAALVTLCCLGSTSAFFLQAFPST---TVVAIRQGRHLHAGPPVSLDDQADFVKAELARKKQEYDAQLKARISASVAGTNPADSVPPLDSLPYIPYLDETGKISDSGADAKVKASVYAVYDESGTVKYIGVSRSVAQSLRLNLARQPEQTYGFRVFHITKPSRVLLEITRDTWIAQLGYQPEGNDNGPKQQLWEGAMDVKPLMNDADNAAMESARIKRRSEENAMKKVTRRFEEAKITVLNARGVTESLRFDPKLKGKGLLDLFLDKQADTAVPDSKP 284
MPR+ A V C STSAFFLQ ST ++ ++RQ L AG SLDDQADFVKAELARKKQEYDA LKARISASVA + ADS+PPLDSLPY+PYLDETGKI+D GADAKVKASVYA+YDES TV+YIGVSRSV QSLRL+LAR PEQTYGFRV+HI+KP+RVLLEITRDTW+ QLGYQP+GNDNGP QQLWE A+DVKPLMN+AD+AA+E+ARIK+RSEENAMKKVTRRFEEAKI+VLNARGVTESLRFDPKLKGKGLLDL+L+KQ D+AVPDSKP
Sbjct: 1 MPRI---LSVAFVCCCYHASTSAFFLQPTLSTKMASITSVRQTAALEAGTSASLDDQADFVKAELARKKQEYDASLKARISASVANADVADSIPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLYLEKQPDSAVPDSKP 283
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G00780.1 ID=NO16G00780.1|Name=NO16G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2230bp
GCTGCTGCTGCTGCTGCTGCTGCTTTTGCTTTTGCTGCTGCGTCTTGAGG
AGGAGGACGGGTGCTGGTGCTGCTGGTATTGGCTATGGTGGTGGTGGTGA
TGACCAAGGAGGGAGGAAGGGGTAGAATGCTTCCCTACCGAAGGCGGGGC
ATGGCTGGTAGGGTGAGATCCCTTATAAGGAGTAGGAGGTGGAAAGGCCA
TGACATCCGAAGGACTATCATCGGGAAAATACCCACCACTTCCTCCACCA
AGGACACCATGCATGGCATACCCCCGCTTCAACTCCCGGCTGCCGCTTCC
ACGCATCGGGGCAGGTGGGGGGGCCATGGAGGAGGAATAGGAGTGGTGGT
TGGACTTGGTGCTGGGGAAAGGAGAGGCGGCAGGGTGGGGAAGGTGATAC
CCGCCTCCTCCATTCCCGTGGCCGTTGCTGCCGAGCAACCCATCTCCACC
GCTGCCGCCACCATGGTGCGAGGATAACGAAGGGGCCAAGGGGGGCAAGG
GTGAACAGGTGTCGTAGTGGTCGACAGGCGTAAAGGTGCGTTGGAGGCCG
CCAGGGGAGGGGGGTCGAGGCAACACGTAGTCGTCGCTGCCTCCAGGGCT
GCCCCCGCTGTCTTCCCCGTCGTCCATTTTAAGGGGACCTTCGTCGTCGT
CCAAGTCCATCATCATGGTGCCGCACGCGGTGCGATGGTTGTGTGTGGGT
CTGTTGTTGCTGTGTCGTACAATGGACAGGGGGTGAGAAGGAGGAGGGTG
CTTTTGAACTCCTGCCACGGCAGGGATTTGACGCAAAACCGAGATAATGC
AAAGGCTCATTTGTTTCACCACCGATGGCACGATTCATGGTTACACTTTG
GACTGTCGAGGGTGAATATGGGTGAGCTGTATGCTCTTTAGGCGCGAGCG
AGTGCCCCAAGTATTTCGAATCCAGGTTTTCCCCCCAAAACTCGTGTGAA
CGACGGCTGCCGGCATCATGCATCATCGTCATGCTTCTTCCCGTCCTGTC
CTCTTCAACAAGGCGAAGCAATAATGCACCAAGACCTCGCCCTACACCCC
CACCCTAATTTTTATCCGACCACCCGACACCAGCACAGATCGGTTCTTGA
TTTGCCGACGCTAGACACCCGCTCCCAGCACTGAAACCCACCCACTGGCC
CGCCGATCATCATGCCTCGCCTCCACCCTGCTGCCGTTGCTGCGTTGGTT
ACCCTATGCTGCTTGGGTAGCACCAGCGCATTTTTCTTGCAGGCGTTTCC
GTCAACGACCGTAGTAGCAATTCGCCAGGGCAGGCATCTCCATGCAGGCC
CACCCGTTTCCTTGGACGACCAAGCCGATTTCGTCAAAGCCGAACTCGCC
CGCAAGAAGCAAGAATACGACGCCCAACTAAAAGCACGCATCTCCGCTTC
CGTCGCTGGCACCAACCCCGCCGACAGCGTCCCTCCCCTGGACTCCCTCC
CTTACATCCCTTATTTAGATGAAACGGGGAAAATTAGTGACAGTGGAGCG
GATGCGAAAGTGAAAGCAAGTGTGTATGCGGTGTACGATGAGAGTGGGAC
GGTGAAATACATTGGGGTCTCACGCTCTGTCGCCCAGAGCTTGAGATTGA
ACTTGGCCCGGCAGCCGGAGCAGACGTATGGCTTTCGGGTGTTTCACATC
ACTAAGCCAAGTCGTGTGCTGTTGGAAATTACGCGGGATACGTGGATTGC
ACAGTTGGGGTATCAGCCGGAGGGCAATGACAACGGGCCTAAGCAGCAGC
TGTGGGAAGGGGCCATGGACGTGAAGCCTTTAATGAACGATGCCGACAAC
GCCGCTATGGAATCGGCCCGCATCAAGAGACGCTCGGAAGAGAACGCCAT
GAAGAAAGTCACTCGCCGGTTCGAGGAGGCCAAAATCACTGTGCTCAATG
CCCGGGGCGTGACAGAGAGCCTTCGATTTGACCCAAAACTGAAAGGAAAG
GGTTTGTTGGACTTGTTCCTAGACAAGCAAGCGGATACGGCCGTGCCAGA
CTCCAAGCCTAAGCCTGCAGCTCCTTAACCTGAGGATCGTGTAGTAGATT
TAGGGAGAGGAGGGGGACCCGGAAGGATCTTGATTGTTTTATTGGAAAAA
GAAGTATTCAAGAGGGGAAAATGAATGACACTTACGATAAACAATTGTTG
CCGTGCGTATTTCCTTTTGGTTTCGATCATTGAGAAAAGGCTCTTACGGC
GAAAAATTGCCGAACATGCTACCATACCCA back to topprotein sequence of NO16G00780.1 >NO16G00780.1-protein ID=NO16G00780.1-protein|Name=NO16G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MPRLHPAAVAALVTLCCLGSTSAFFLQAFPSTTVVAIRQGRHLHAGPPVS
LDDQADFVKAELARKKQEYDAQLKARISASVAGTNPADSVPPLDSLPYIP
YLDETGKISDSGADAKVKASVYAVYDESGTVKYIGVSRSVAQSLRLNLAR
QPEQTYGFRVFHITKPSRVLLEITRDTWIAQLGYQPEGNDNGPKQQLWEG
AMDVKPLMNDADNAAMESARIKRRSEENAMKKVTRRFEEAKITVLNARGV
TESLRFDPKLKGKGLLDLFLDKQADTAVPDSKPKPAAP* back to topmRNA from alignment at chr16:257341..260297- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G00780.1 ID=NO16G00780.1|Name=NO16G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2957bp|location=Sequence derived from alignment at chr16:257341..260297- (Nannochloropsis oceanica)
GCTGCTGCTGCTGCTGCTGCTGCTTTTGCTTTTGCTGCTGCGTCTTGAGG
AGGAGGACGGGTGCTGGTGCTGCTGGTATTGGCTATGGTGGTGGTGGTGA
TGACCAAGGAGGGAGGAAGGGGTAGAATGCTTCCCTACCGAAGGCGGGGC
ATGGCTGGTAGGGTGAGATCCCTTATAAGGAGTAGGAGGTGGAAAGGCCA
TGACATCCGAAGGACTATCATCGGGAAAATACCCACCACTTCCTCCACCA
AGGACACCATGCATGGCATACCCCCGCTTCAACTCCCGGCTGCCGCTTCC
ACGCATCGGGGCAGGTGGGGGGGCCATGGAGGAGGAATAGGAGTGGTGGT
TGGACTTGGTGCTGGGGAAAGGAGAGGCGGCAGGGTGGGGAAGGTGATAC
CCGCCTCCTCCATTCCCGTGGCCGTTGCTGCCGAGCAACCCATCTCCACC
GCTGCCGCCACCATGGTGCGAGGATAACGAAGGGGCCAAGGGGGGCAAGG
GTGAACAGGTGTCGTAGTGGTCGACAGGCGTAAAGGTGCGTTGGAGGCCG
CCAGGGGAGGGGGGTCGAGGCAACACGTAGTCGTCGCTGCCTCCAGGGCT
GCCCCCGCTGTCTTCCCCGTCGTCCATTTTAAGGGGACCTTCGTCGTCGT
CCAAGTCCATCATCATGGTGCCGCACGCGGTGCGATGGTTGTGTGTGGGT
CTGTTGTTGCTGTGTCGTACAATGGACAGGGGGTGAGAAGGAGGAGGGTG
CTTTTGAACTCCTGCCACGGCAGGGATTTGACGCAAAACCGAGATAATGC
AAAGGCTCATTTGTTTCACCACCGATGGCACGATTCATGGTTACACTTTG
GACTGTCGAGGGTGAATATGGGTGAGCTGTATGCTCTTTAGGCGCGAGCG
AGTGCCCCAAGTATTTCGAATCCAGGTTTTCCCCCCAAAACTCGTGTGAA
CGACGGCTGCCGGCATCATGCATCATCGTCATGCTTCTTCCCGTCCTGTC
CTCTTCAACAAGGCGAAGCAATAATGCACCAAGACCTCGCCCTACACCCC
CACCCTAATTTTTATCCGACCACCCGACACCAGCACAGATCGGTTCTTGA
TTTGCCGACGCTAGACACCCGCTCCCAGCACTGAAACCCACCCACTGGCC
CGCCGATCATCATGCCTCGCCTCCACCCTGCTGCCGTTGCTGCGTTGGTT
ACCCTATGCTGCTTGGGTAGCACCAGCGCATTTTTCTTGCAGGCGTTTCC
GTCAACGACCGTAGTAGCAATTCGCCAGGGCAGGCATCTCCATGCAGGCC
CACCCGTTTCCTTGGACGACCAAGCCGAGTACGTATTTGATTTTGTTTCT
TGAGCGAACGCGCTGAGAGGGAAAATATCCATGCATGTAGCGTTTATTTG
ATTGTGCCTCTGGCTGCTCGGTCACGCAGTGATGATGTGCATGGAATGTA
TAAGAACATAGATAATGTGAGAGTTCGGGATGCTTTTCACATACCACCAG
CCGTCCCCTTTTTCTCTCCAACCAATCCACATCTTCTACGCATGCGGTCC
CGCCGTGAATGAACTTCCTCTTCCGAAATGCTGTCAATTCAAGGCTAATT
ATCTTCTCTATTTCGTACTCCTCCCCCTCTTCCTTCCATAGTTTCGTCAA
AGCCGAACTCGCCCGCAAGAAGCAAGAATACGACGCCCAACTAAAAGCAC
GCATCTCCGCTTCCGTCGCTGGCACCAACCCCGCCGACAGCGTCCCTCCC
CTGGACTCCCTCCCTTACATCCCTTATTTAGATGAAACGGGGAAAATTAG
TGACAGTGGAGCGGATGCGAAAGTGAAAGCAAGTGTGTATGCGGTGTACG
ATGAGAGTGGGACGGTGAAATACATTGGGGTCTCACGCTCTGTCGCCCAG
AGCTTGAGATTGAACTTGGCCCGGCAGCCGGAGCAGACGTATGGCTTTCG
GGTGTTTCACATCACTAAGCCAAGTCGTGTGCTGTTGGAAATTACGCGGG
ATACGTGGATTGCACAGTTGGGGTATCAGCCGGAGGTAAGGAAGGACTGT
GTCTCCCCTTCCGACCTCCCCTTTCTCGAGTTCTGCTCCCCTCCCCTCGT
TCACTCCGTCTTATTTCGGTAGGGACGAGTTCAATTGTCTCTCGTTTGTT
AATTCCTAAACCTTCCAATGGACGATCATACACACCCATACTCAGGGCAA
TGACAACGGGCCTAAGCAGCAGCTGTGGGAAGGGGCCATGGACGTGAAGC
CTTTAATGAACGATGCCGACAACGCCGCTATGGGTACGCTCGTGCGTGCG
CAAAGGAACTGAGCTGGAAGACTCTTTGATTGTCATCCCCCCCCCCTTTT
TTTTTCCCCTGCCTTTACGTGCTTTATCCTCCTTCATTTTCCTTTCAAGT
TTTGTGATGTATCCGTGTGCTCGACCTCCCATGCCCCCTCTTTTCGTCAT
TCACACCCGATCCTTTCTCTCAGTCTCACGTTCGCTCTATCTCTTTCTCT
TACCCACCCACCACTACCACCATCAACAAACAAACAGAATCGGCCCGCAT
CAAGAGACGCTCGGAAGAGAACGCCATGAAGAAAGTCACTCGCCGGTTCG
AGGAGGCCAAAATCACTGTGCTCAATGCCCGGGGCGTGACAGAGAGCCTT
CGATTTGACCCAAAACTGAAAGGAAAGGGTTTGTTGGACTTGTTCCTAGA
CAAGCAAGCGGATACGGCCGTGCCAGACTCCAAGCCTAAGCCTGCAGCTC
CTTAACCTGAGGATCGTGTAGTAGATTTAGGGAGAGGAGGGGGACCCGGA
AGGATCTTGATTGTTTTATTGGAAAAAGAAGTATTCAAGAGGGGAAAATG
AATGACACTTACGATAAACAATTGTTGCCGTGCGTATTTCCTTTTGGTTT
CGATCATTGAGAAAAGGCTCTTACGGCGAAAAATTGCCGAACATGCTACC
ATACCCA back to topCoding sequence (CDS) from alignment at chr16:257341..260297- >NO16G00780.1 ID=NO16G00780.1|Name=NO16G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr16:257341..260297- (Nannochloropsis oceanica)
ATGCCTCGCCTCCACCCTGCTGCCGTTGCTGCGTTGGTTACCCTATGCTG
CTTGGGTAGCACCAGCGCATTTTTCTTGCAGGCGTTTCCGTCAACGACCG
TAGTAGCAATTCGCCAGGGCAGGCATCTCCATGCAGGCCCACCCGTTTCC
TTGGACGACCAAGCCGATTTCGTCAAAGCCGAACTCGCCCGCAAGAAGCA
AGAATACGACGCCCAACTAAAAGCACGCATCTCCGCTTCCGTCGCTGGCA
CCAACCCCGCCGACAGCGTCCCTCCCCTGGACTCCCTCCCTTACATCCCT
TATTTAGATGAAACGGGGAAAATTAGTGACAGTGGAGCGGATGCGAAAGT
GAAAGCAAGTGTGTATGCGGTGTACGATGAGAGTGGGACGGTGAAATACA
TTGGGGTCTCACGCTCTGTCGCCCAGAGCTTGAGATTGAACTTGGCCCGG
CAGCCGGAGCAGACGTATGGCTTTCGGGTGTTTCACATCACTAAGCCAAG
TCGTGTGCTGTTGGAAATTACGCGGGATACGTGGATTGCACAGTTGGGGT
ATCAGCCGGAGGGCAATGACAACGGGCCTAAGCAGCAGCTGTGGGAAGGG
GCCATGGACGTGAAGCCTTTAATGAACGATGCCGACAACGCCGCTATGGA
ATCGGCCCGCATCAAGAGACGCTCGGAAGAGAACGCCATGAAGAAAGTCA
CTCGCCGGTTCGAGGAGGCCAAAATCACTGTGCTCAATGCCCGGGGCGTG
ACAGAGAGCCTTCGATTTGACCCAAAACTGAAAGGAAAGGGTTTGTTGGA
CTTGTTCCTAGACAAGCAAGCGGATACGGCCGTGCCAGACTCCAAGCCTA
AGCCTGCAGCTCCTTAA back to top
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