Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr16 genome chr16:67837..71481 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G00180.1 vs.
Match: EWM22694.1 (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana])
HSP 1 Score: 157.5 bits (397), Expect = 2.000e-34
Identity = 136/382 (35.60%), Postives = 178/382 (46.60%), Query Frame = 0
Query: 540 FSSSSSSSSSSNGSHSTEATLAAVASYAAAQVHAASTVAHATHQQLGLHQSLLYLPYHMQQVLPSYIFYPSLPFSGMVLQDNSLLSEVLSFLL--TQDSSDRFTLSKFGLVSRHWHKLTLLDRFWSPIARSCFPVLALEAAPGESRLVLVGQGAAGCPSNMHAAALKAATVCGGYRSEESLLASTPHRNVVLDYGRCLVETRLCKLADWKEGLRLSFEVFDAEDGLRLYSAEGPVKVTPITDSNVTSLRLSTGSRREVTHP-FSAASRDAVAQRFGSVRDYFRHGHTTEYSCALTVRITAYDVRTGRVALIYHASKAPKSSAGATPSAYWQNFLPPGSLD-VCDAWTWNSVHHPSMGSANAGPAMEMRVGFFVGPEPGQLDG 918
F SS S S SS S+ +TL A++S + HA S+ + A Y LPS PSL L LL + FLL + R L+ LV+R +H L + +W P+A PVLA+ R A + A GG R E+ R +L YG CL+ R ++G LSFEV+DA DGLR+ SA GP++V TSLR+ RREV P FSAASRD + +RF S+ DYF GH E+ AL+VR+T D RTGR+AL++ K A P AYW+ FLP GS+ D W+ P M A G +M + +GF V PE DG
Sbjct: 114 FPSSPSPSPSSFFPSSSSSTLLALSSLS----HALSSPSVA---------------YPPTAFLPSAPL-PSLSARLSALSSPDLLHMIFPFLLHRARPQEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPRR-------------QEEEKAARGAGEGGGRRGED-------FRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEA-PLAYWEPFLPEGSISCFLDHWS------PLMCPAYDGESMTVTIGFHVCPEAAGEDG 448
The following BLAST results are available for this feature:
BLAST of NO16G00180.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 2.00e-34 / Id = 35.60 Sequence EWM22694.1
Match Name E-value Identity Description
EWM22694.1 2.000e-34 35.60 hypothetical protein Naga_100340g3 [Nannochloropsi... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO16G00180.1 ID=NO16G00180.1|Name=NO16G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=3437bp back to top protein sequence of NO16G00180.1
>NO16G00180.1-protein ID=NO16G00180.1-protein|Name=NO16G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=967bp back to top mRNA from alignment at chr16:67837..71481+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00180.1 ID=NO16G00180.1|Name=NO16G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=3645bp|location=Sequence derived from alignment at chr16:67837..71481+ (Nannochloropsis oceanica)ATG
TCTACGGCCCAACTAGGCGACGGCATCGGCGGGCAAGGTAAGGATAACGT
TGGTGGCGTGGCCAGCACACCTCCCGATGGACACGAGACCATCACTACCG
GTAGCAGCACCAATTGTGGCGGTAGTAGTGACGGTGGCAGAAGAATAAGA
AGAAGTCTGCACATGCGGGACGCGGTGGCTCGCACATGCTTGGATTCGCT
CCTGGATGCGGCTGAG GTACGTACATCTTGGTGGTGGGAGAAAAAGACGG
GTAGGGCGGGTGGGGGGATGGAGGACCCACCAAAGGCATGACAGAGAGTC
AGAAAAAAGTTCAGATGCTGCAAAATTGTGAACCAAACAGGAAAAGGACG
TACTGGTCCGTCATCTTTTCCGCGACGACCTCAACCTTTCTCATCATCCC
TTCATTCCTCCCTTCCTCCCTCAGATCATCCCACGCCATGCCGAACTCGT
CGGTGACCTCCTTATCCGCCTTCGCCAAGAGCGAGGTGTCTCTCCTCCTT
CGGTATTCTTGTCCTCCTCTGCCTCTTCTCCCTTCACCTCTTCCTCGTCC
AGTCAGATTGCTCCTTCGACCGTGGTGACGCCCCCGCGACACGGACAGCA
TCTCCACCCTCACCCTTTCCCGCAGGTGCCCCCCCTTGTGGGGGCACCCG
AGGAGGAGAAACTCCGTGACCTGGCATTATGCTTGTTCAACGTCTTGGAA
TGCGTGCACAGACCCTTGTTCAATCAAGCAGAGACGACAAGGACGACCCA
GGCGGGGAGGACCGCCTATTCTCCCCAAAGCACTGTCATGTCAATCTCAA
CCACCGCCACTGGCGGTGTCACCAACACCGTGAGGGCCAGGAACGGAGAG
CAGACGACAGCTGTCAAAAAGAGAGCCCCCAATGACGGAATGACGGCTCT
TGATCTTGCCCCCCTCTTTGCCGGGACCGACCGCACCATTAGCAACAGAA
TCAGTCGTGGTGACAGCGCCAGCAGCACCAGTAGTAGCAGCAGTGGTGAC
GGCTGCAAGAGCAGCTCCTCTCAATCTCCTACAGCGCCGCCCAGCACGCC
TGTAACACCGGAAAGGATGATAACTGGTGCGGGCAAGTGTCATGAGGTCG
AGGACAACGAGGATGGGACCGAGGCCAATGCCACCAAGCCCAGCACTCCT
CGGGACGCCCCGACGCACGCCTGGTCGATACCATGTGTGCACCAACAGCA
GCATGTTCCCTCGAAGCCATCGCCATATCAGCAACGGCAACACATGCGCA
TGCAAACTCAAGGCTCTATTCCCCACAGCACTTTTACTCCCTCCCCATCT
TTGGCCGCGCGGCCTCCCGGTTTCTACTGCACCACCACCGTGACCAAGGC
TTCTTCCTCACTGCCCGATTATGATGACCGGAGTCTCCTTCATAAGCATT
CCCATTCCCTGTCCTCCTCCTCTTCTTCCTCCTCCTCGTGGTTTTCCTCC
GCCTCTTTACCATCGGGCGTGAGCACTACGGCTGTTCGTGGCAGCCTGGA
AGAATATATCAGCAGTCGTCACGGCAGTCTTGGCGCAAGCAGCATCGGGA
GCAACAGCAGCGATAACCACAACACCACCACTAATGACAGCAGCGATGAC
AGCAGCAGCGGCAAAAAGGGTCACCCGTTCTACCATCCGCCCTTCCTCCT
CCAGCAGCTGCACGAGCAGCAGCACCCTGGTCATGCCCCCATCCTCCTCA
CCACGGCCACCACCACCGTCTATTCGCCCCTCAGCCACCACCAAGCTGCA
CGCAGCGCTGAAAACATCAGCGACAGCAGAAATAGCAGCGGTAGCAACAA
TAGCAGTAGCAGCAGCATCAACTTTAGCAGTAGTAGTAGCAGTAGTAGCA
GCAGCAATGGCTCCCACTCTACAGAGGCAACTTTGGCCGCAGTAGCCAGC
TACGCGGCTGCCCAAGTCCATGCAGCCAGTACTGTCGCGCACGCCACCCA
TCAGCAGCTCGGTCTCCATCAGTCGCTACTTTACTTGCCCTATCACATGC
AGCAAGTGCTGCCCTCCTATATCTTTTACCCGTCCCTTCCTTTTTCCGGC
ATGGTACTACAAGACAACTCCCTTCTATCCGAGGTCTTATCTTTCCTCCT
CACCCAAGACAGCTCTGATCGCTTTACGCTGTCCAAATTCGGGTTAGTCT
CACGCCACTGGCACAAACTCACACTCCTTGACCGCTTCTGGAGTCCCATC
GCTCGAAGTTGCTTCCCTGTTCTGGCCCTCGAGGCCGCGCCGGGAGAGTC
CCGCCTGGTGCTAGTGGGCCAGGGGGCGGCGGGATGCCCTAGCAACATGC
ATGCAGCTGCCTTGAAGGCAGCGACGGTGTGTGGAGGGTATCGGAGCGAA
GAAAGTCTTTTGGCTTCGACGCCGCATAGGAATGTGGTCCTGGATTACGG
GCGTTGTTTGGTTGAGACGAGGTTGTGCAAGCTTGCGGATTGGAAAGAGG
GTTTACGCCTGTCTTTTGAAGTTTTCGATGCAGAGGATGGCCTGCGCTTG
TACAGCGCCGAGGGCCCGGTCAAGGTTACGCCCATCACAGATTCGAATGT
GACTTCTCTTCGCCTTTCCACCGGCAGTCGCCGGGAGGTGACCCACCCCT
TCTCAGCAGCCTCACGCGATGCCGTCGCTCAGCGCTTTGGCTCTGTCAGG
GACTATTTCCGCCACGGACATACAACTGAATACTCCTGCGCACTGACTGT
CCGCATCACGGCGTATGATGTGCGTACTGGCAGGGTAGCCTTAATCTACC
ACGCCTCCAAAGCGCCGAAATCTTCCGCCGGCGCCACGCCCTCAGCTTAT
TGGCAGAACTTCTTGCCACCTGGATCCTTGGACGTATGCGATGCTTGGAC
ATGGAACTCTGTCCATCATCCTTCTATGGGGTCGGCAAATGCAGGACCAG
CAATGGAAATGCGGGTGGGTTTCTTTGTCGGGCCAGAGCCGGGGCAGTTG
GATGGAGTGAGTGACAAGGATCGGCTGTATCGTGTGGTGGCGCGGGATTG
GCACCCCGAGGAGCCACAGCAAGATGCGTCGCTTATGTTTCTGTACTTCA
AGTCCTTGGACACCCTTGCCATTGGCAAGTTCGTTCGTGGACTCTTAGAT
CGGTAG back to top Coding sequence (CDS) from alignment at chr16:67837..71481+
>NO16G00180.1 ID=NO16G00180.1|Name=NO16G00180.1|organism=Nannochloropsis oceanica|type=CDS|length=2901bp|location=Sequence derived from alignment at chr16:67837..71481+ (Nannochloropsis oceanica) back to top