NO16G00180, NO16G00180 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO16G00180 vs. NCBI_GenBank
Match: XP_005853741.1 (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EKU22622.1 hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EWM30397.1 hypothetical protein Naga_100026g9 [Nannochloropsis gaditana]) HSP 1 Score: 172.6 bits (436), Expect = 6.100e-39 Identity = 117/364 (32.14%), Postives = 177/364 (48.63%), Query Frame = 0
Query: 608 YPSLPFSGMVLQDNSLLSEVLSFLLTQDSSDRFTLSKFGLVSRHWHKLTLLDRFWSPIARSCFPVLALEAAPGESRLVLVGQGAAGCPSNMHAAALKAATVCGGYRSEESLLASTP------HRNVVLDYGRCLVETRLCKLADWKEGLRLSFEVFDAEDGLRLYSAEGPVKVTPITDSNVTSLRLSTGSRREVTHPFSAASRDAVAQRFGSVRDYFRHGHTTEYSCALTVRITAYDVRTGRVALIYHASKAPKSSAGATPSAYWQNFLPPGSLDVCDAWTWNSVHHPSMGSANAGPAMEMRVGFFVGPEPGQLDGVSDKDRLYRVVARDWHPEEPQQDASLMFLYFKSLDTLAIGKFVRGLLD 966
+P++P L D +LL FL+ R L LV R W L DRFW P+ FP L+ A + GA+G + AAAL A V G S +++P HR ++ +GRCL + R + W EG+ LSF++ D +DG RL+S+ GP++ T T +T+++L TG RR VT PFSAASRD S+ + F+ G + +Y + T+R+TA D RTG++AL++ ++K K +P G+L V W+ ++ + AM+M F+V P GQ + +S +RLY V+ D L K+ D IG+F+ L+
Sbjct: 227 HPAVPAPSTALGDAALLHYCFDFLVEGRLQYRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEE-----DGASG--PDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFD-RPIRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKL-TGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGE---DMGVPQGTLLVNQGWSRVTIPSTDL-------AMQMLTVFYVAPVEGQPETISAAERLYSVLTLD----------CAFMLQCKTEDQEQIGRFILAALE 561
BLAST of NO16G00180 vs. NCBI_GenBank
Match: EWM22694.1 (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana]) HSP 1 Score: 162.5 bits (410), Expect = 6.400e-36 Identity = 110/298 (36.91%), Postives = 145/298 (48.66%), Query Frame = 0
Query: 618 LQDNSLLSEVLSFLL--TQDSSDRFTLSKFGLVSRHWHKLTLLDRFWSPIARSCFPVLALEAAPGESRLVLVGQGAAGCPSNMHAAALKAATVCGGYRSEESLLASTPHRNVVLDYGRCLVETRLCKLADWKEGLRLSFEVFDAEDGLRLYSAEGPVKVTPITDSNVTSLRLSTGSRREVTHP-FSAASRDAVAQRFGSVRDYFRHGHTTEYSCALTVRITAYDVRTGRVALIYHASKAPKSSAGATPSAYWQNFLPPGSLD-VCDAWTWNSVHHPSMGSANAGPAMEMRVGFFVGPE 912
L LL + FLL + R L+ LV+R +H L + +W P+A PVLA+ R + A GG R E+ R +L YG CL+ R ++G LSFEV+DA DGLR+ SA GP++V TSLR+ RREV P FSAASRD + +RF S+ DYF GH E+ AL+VR+T D RTGR+AL++ K A P AYW+ FLP GS+ D W+ P M A G +M + +GF V PE
Sbjct: 172 LSSPDLLHMIFPFLLHRARPQEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPRR-------------QXXXXXARGAGEGGGRRGED-------FRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEA-PLAYWEPFLPEGSISCFLDHWS------PLMCPAYDGESMTVTIGFHVCPE 442
BLAST of NO16G00180 vs. NCBI_GenBank
Match: EWM22815.1 (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana]) HSP 1 Score: 134.0 bits (336), Expect = 2.400e-27 Identity = 84/272 (30.88%), Postives = 122/272 (44.85%), Query Frame = 0
Query: 639 RFTLSKFGLVSRHWHKLTLLDRFWSPIARSCFPVLALEAAPGESRLVLVGQGAAGCPSNMHAAALKAATVCGGYRSEESLLASTPHRNVVLDYGRCLVETRLCKLADWKEGLRLSFEVFDAEDGLRLYSAEGPVKVTPITDSNVTSLRLSTGSRREVTHPFSAASRDAVAQRFGSVRDYFRHGHTTEYSCALTVRITAYDVRTGRVALIYHASKAPKSSAGATPSAYWQNFLPPGSLDVCDAWTWNSVHHPSMGSANAGPAMEMRVGFFVGP 911
R L+ V+R W DRFW PI P L ++A E P+R L Y RCL + +W + LSFE++D +D +RL+ A GP++V T+S +T+LRL+ R EV PFSA SRD V +RF ++ Y H ++ L VR+ A D RTG ALIY++ K S + +W+ FLP SL V +AW+ + + + A+E+ F+V P
Sbjct: 268 RVNLAPLLTVARLWRATASQDRFWRPIVSWTLPTLTMDA------------------------------------KETRTTKPFPYRQAFLRYARCLALPVVGDGEEWHAHVLLSFEIYDVQDSMRLFVASGPLEVIQSTESGLTALRLTGTKRSEVCRPFSAKSRDPVNKRFENISAYLCHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVWEAWSRWVLQNGTQ------EAVEISTSFYVSP 497 The following BLAST results are available for this feature:
BLAST of NO16G00180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G00180 ID=NO16G00180|Name=NO16G00180|organism=Nannochloropsis oceanica|type=gene|length=3645bpback to top protein sequence of NO16G00180.1 >NO16G00180.1-protein ID=NO16G00180.1-protein|Name=NO16G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=967bpback to top Synonyms
Publications
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