Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr16 genome chr16:56176..60847 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G00160.1 vs.
Match: EWM22818.1 (hypothetical protein Naga_101261g1 [Nannochloropsis gaditana])
HSP 1 Score: 137.1 bits (344), Expect = 2.700e-28
Identity = 138/304 (45.39%), Postives = 176/304 (57.89%), Query Frame = 0
Query: 4 PPGKVDAQKKQYEDSRSSSEDEGESKDSAPSVSAGDGGGPAA----GAPTAAASTVTVFPDRRGQHGGKGEAFAAAMKRPRPTTQEEDDDSQEDEDGEEKSDSSSSEEEDDDQAHLYLDREDRKRLKAMTELEREMILAQRNDEFTLRQQQEKLEIMAETRRKEEEKKARRAAKKSGGPLPPKPNQQQQQQQQQQQQQEQHLQQQQQREQQTKTGEEGAEARPGGLAAIVDEESDEDEEGKEEGEEGESDEEEIVMSDSEEEDEEEEEGEAYDGRLTRGRAAGTLRKPRARGRAGGRKGGESGD 304
P +VD KK +E+ SSS E SA S GG + TA + + + G AF A MKRPRP +EE+++ +E+ SS+EEDD+QAHLY DREDRKRLKAMTELEREMILAQRN+EFT+RQQQEKLEIMAETRRKEEEKKARRAAK++G + + ++++++++ ++++ +EG +A P GLA IVDEES DEEGKEE EE +EEIVMS EEE E EE E G GGR+GG G+
Sbjct: 38 PGDEVDPLKK-HENPLSSSAKTEEGDGSALPASDESGGREQGDTFKSSGTALVNAGSEASQQAGSQKEASTAFGATMKRPRPEEEEEEEEEEEE----------SSDEEDDEQAHLYTDREDRKRLKAMTELEREMILAQRNEEFTMRQQQEKLEIMAETRRKEEEKKARRAAKRAGKAVEAREKKEEKEEEEVKEEK-----------------KEGDDAGPVGLADIVDEES--DEEGKEEEEE---SDEEIVMSSDEEEGGEGEEAEG--------------------GAKGGREGGRGGE 288
The following BLAST results are available for this feature:
BLAST of NO16G00160.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2800 Expect = 2.70e-28 / Id = 45.39 Sequence EWM22818.1
Match Name E-value Identity Description
EWM22818.1 2.700e-28 45.39 hypothetical protein Naga_101261g1 [Nannochloropsi... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO16G00160.1 ID=NO16G00160.1|Name=NO16G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2809bp back to top protein sequence of NO16G00160.1
>NO16G00160.1-protein ID=NO16G00160.1-protein|Name=NO16G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=908bp back to top mRNA from alignment at chr16:56176..60847-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00160.1 ID=NO16G00160.1|Name=NO16G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=4672bp|location=Sequence derived from alignment at chr16:56176..60847- (Nannochloropsis oceanica)ATGGCCTCACCGCCCGGCAAAGTCGACGCCCAAAAGAAG GTACTTGTGGA
ACTATGCAGGTCGTTTCAATTTTCTTCCCTCAGTCCCTCCCCATGCTCCG
TTCCTCCCACCCTTGCCTCCTTCCCCCATCTCCATCTCTCTCACCCCTCC
CTGATCAATCACAAAAGCAGTACGAGGATTCGCGCTCCTCTTCCGAAGAT
GAGGGAGAGAGTAAGGATTCTGCGCCTTCTGTCTCCGCGGGGGATGGAGG
AGGACCAGCTGCGGGAGCACCCACAGCAGCAGCCAGTACGGTGACTGTGT
TTCCCGACCGCCGGGGACAACATGGTGGGAAGGGAGAAGCGTTCGCAGCG
GCAATGAAACGCCCGCGTCCAACGACACAGGAAGAGGATGACGATAGCCA
GGAGGATGAGGACGGAGAGGAGAAGAGTGACTCCAGTTCAAGCGAGGAAG
AGGACGATGACCAGGCCCATTTATACTTGGATAGGGAGGACAGGAAGAGG
CTCAAAGCCATGACGGAGCTGGAGCGCGAGATGATCTTGGCGCAGCGAAA
CGACGAGTTTACCTTAAGGCAGCAGCAGGAGAAG GTAAGCGAGAGAAAGG
GGACGGGGGTCAGGGAGGAAGGCAGGGAGCAAAAGAAAGGAGGGGCGGAG
GAGAGAGGAGTTTCTGGACTTTTACGTCAATGCGCTTTCTAATGTAAAGC
CTCTCTCCCTCCCTCTCTCTTTCCACTTTCTGTTTGTCCACATTGTGGTG
TCTCCATAGCTGGAAATCATGGCGGAAACCCGTCGAAAGGAAGAAGAGAA
GAAAGCCCGTCGAGCGGCCAAGAAATCCGGGGGGCCACTCCCTCCCAAGC
CCAACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGCAG
CACCTACAGCAGCAGCAACAGCGAGAGCAGCAGACAAAGACGGGAGAGGA
AGGGGCGGAGGCACGGCCCGGCGGATTGGCGGCTATTGTGGACGAGGAGA
GCGATGAGGACGAGGAAGGGAAGGAGGAAGGGGAGGAAGGGGAGAGTGAC
GAGGAGGAGATAGTAATGAGTGACAGTGAAGAGGAGGACGAAGAGGAGGA
GGAGGGAGAGGCGTATGACGGGCGGTTGACGCGAGGGAGAGCGGCGGGGA
CACTTCGGAAGCCGAGGGCGAGGGGGAGGGCGGGAGGGAGGAAAGGGGGA
GAGAGCGGGGACGAGAGTGAGGAGATGGAGATCAGTGATGACGACGAGAA
GGGAGCACGGAGAGAGAAGATGAAGAAGAGGATGAGGAGGGAGGGAGAGG
GGGAGGACGAGGAGGAGGATCAGGTGTATG GTAGGTGTGGAAGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGGGCAAGGGAAGGGAAGTAGTCAAGTCAA
AAATGGATGCGACGTTGAAAGATCTCTCCCGACTCCCCCCTCCCTTCTTC
CCTCCCTCCCTTCCTCCCTACCCTCAGACATCAACCAGCAGGTGGCCGAA
GCCCACGAGCTGGCCAAGCTACAGGTGAAGCGCCACCACCTCGAGAAGTG
GATCGCCGAGCCCTGGTTCGCG GTACGTCCTCCCTCCCTCTCCCCCTCCC
TTTGGGGAGTTCAGGCACTACTCAAGCTTTTCCTCCCTCCCTCCCTCCCT
CCCTGACAGGCGGCCATCCGGGGATCCTTCGTCCGGGCCAACATCGACGC
GATTGAGGGCCAGCCCGTCAAGGGGTACTTGCTGCTGGAGGTGAAAGGCG
TCAAGCACGGCAAGACCTACACCAGCGGCTCCCTTCGCTGCGACGTCTAT
CTGCAG GTAGGGAGGGTGGAAGGGAAGGTGGGAGGGAAGGTGGGAGGGAC
GGACGGAGGGGGGGAAGAGAGAGGAGCCAGTCAGGGGCAGTGAAATCACT
CTCAACATGTTTTCTCACTTCCCTCCCTCTCCCCCTCTCCCTCAGCTCCA
TTACGGCAAGTCCGAGCCCGGCACCAAGGGAGTGGGTGTCCCCATTCGCG
TCGTCTCCAACTCCGCCTTCCAGATCGAG GTATGCCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCGTATTCATCTGTGCCTTCCCTCCCTCACTCCGTAT
TCATCTGTGCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTC
CCTCCCTCCCTCCCTCCTTCCCAGGAATACGGTCAGTGGAAGCAGCAATG
CCACCAGCAGGAGAGCTATATGCCCAGCCCCGCCGACGTCAAGAGACGCT
TGGAGAAACGCCACAAG GTAAGAGAACCTTTCCTCCCTCCTTCCTTCCCT
CCCTCCCTCCTTCCCTTCCTCCCTCCCTCCCATTATGTGAGTCATACGCC
TTGGCTTGACGCATCTCCTTTCCAATCCTCATTCGTTATCCTGCCTTCCT
TCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCC
CTTCCTCCCTCCATCCCTCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCT
ACCTACCCAGCTCATCACGGGTCACCAGTACACCGAGGCGCAGATCTCAG
AGACGATTGCCCGCCGTAAGAAATACAAGGCAGGTGGGAGCAAGAAGGAT
TTAAAGCATGGCCTGGGCCGACGGAAG GTAGGTAGGAAAGGAGGGAGGGA
GGGAGCAATGGGGCTTCAGGTTGATTTGTTTAATGGTGTTGTTTGAAAAG
ATACATGCCTCGCGGAATGGCTGTTCCCCCCTCTTTCCCTCCCTCCCTCC
CTCCCTCTCACCTTCTTTCCCATTTCCCCCCGTCTAGGTGGAGCTGGAAC
GCATCATGGAGATCAATTCCAGCGGCATCTCGCGCTTGCG GTAAGTGCCT
CCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCCCCCTCCTGGCA
CCTGCTCCAGTTCCCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCGC
AGGAAGAAGGTGGAGCAGCTGAAGGAGAAGGGAGAGGACAAAGACATGAA
GGACCTGGAGGAGACCAAGGCGTTGCTTAAGACCCTCGAG GTAGGGAGGG
AGGGACGGAGGGAGGGACGGAGGGACCGAGGGAAGGAGGGATGCAGGGAG
GGAAGGAGAGCGAGGGCTATTGTTATTCAACGGCACCTGCCCTCAACCAT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTTTGC
AGGAGGACCACGCCCGCGGCCAGGCGGAGTACAACCAGCTGCTCTCCCTC
TTCTCGGAAGAGCGAGAGAAGACGCAGCAGCAGTCGCAGGCCTGGAACAA
GATCGCCGAGCGGAGCCGGCAGGAGCAGTTAATGATGGCCACAG GTGCAC
CCTACACCAGGCCTTGCCTTCTTCCCCTCCCTCCCTCCCTCCCTTCCTCC
CCCTCCTCCCCCTCTCTCTTCCTCCGTTCTCCTCCCCCCTCCCTCCCTCC
CTGGACTGGGTTTTACTCCTTTTCGAGGCAGGCTGTCGATAGCCTCGCTT
CACACTCATCACCGTCCCTCCCTCCCTTCCTCTCTCCCTCCCTCCCTCCC
TCCCTCCCGTGCCAGACGGTGCCCTCCCAACCCTCCTTCCCGCCTCCCTC
CGGCAGCAGGTCGAGAGGGCCGATCCCTTCCAGCGCCAACGGACGGCACC
CAAG GCAATGAAGGAGGGAGGGAGGGAGGGAGGGGAGGAGAGAGGAGAAG
ACAGAGTCAACAAAAAGAGTGCCAAGGAAGGAAGGATTTCACATACATAC
GACTCTTCTCTCATCCTTCCCTCCCTCCTTTCCTCCCTCCCTCCCTAGGT
CTTGTGGAGCGTTAAGGGAAGCCAGGGCGCAGGTGCAGGTGCTGAAAGAG
GAGCAGCTGGAGACAAATCAGCTGCAACAGCAGCAGCAGCAGCGTCCAAG
TCGAAGGCGGGAGGGGGGAATGGCAAGGCCTTACTGTCAGGTAGGACAAG
GCTCGGAGGGAGGGAGGGGAGAGGGAGGGAAGGAAGAAGGATGGAAAGAG
GGAAGGAGGGAGCGTTTCGAAAATTTCGTCCCTTCCTGGATGGATTTGAC
CCAAGCCTATTCAATGCTCTCCCTCCCATCCTCCCTCCAATCCTCCTCCC
TCCCTCCCTCCCCCCAGCGTGTATGGACGATCCGGCTGACGTAGACCCGG
CCTTTGACCCCCTGATGGTCGCCTCCTTCTTCCTGGAGAGCGACGGAGGG
AGGGAGGACGGAAGGGAGGACATGAAGAAGGTCCTGAGCAGGTATTTGCC
CGTGCCGAAGAGAGAGGGAGGCAGGGAGGGAGGGAAGGTGAAGAGGACGG
GAAAGAGGGTGGGGATGACGGTGGGGGAGTACATGTCGAAGGTGACGACG
GTGGCGGAGGGGGGGGAGGGCAGGGAGGAGGAGGAATGGAGGTGGAGTGA
GAGCAAGGGGAGGAATGGAGGACAGAGAGGCATTTGGGGTCTGGACTACT
CTACCCTGCCGTGGAAGGTGCCATTGACCTATAGTGGCAAAGCGTTTAGA
GGCGGTGGGTGGTTGTGGATATCGACCTTCTCTACGACGTGTTTTTCAGC
CAGCAAGCACAACCAAAAGCTAACCGCTGGGGAATAA back to top Coding sequence (CDS) from alignment at chr16:56176..60847-
>NO16G00160.1 ID=NO16G00160.1|Name=NO16G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=2724bp|location=Sequence derived from alignment at chr16:56176..60847- (Nannochloropsis oceanica) back to top