NO16G00160, NO16G00160 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO16G00160 vs. NCBI_GenBank
Match: EWM22824.1 (hypothetical protein Naga_100375g6 [Nannochloropsis gaditana]) HSP 1 Score: 95.1 bits (235), Expect = 1.200e-15 Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 0 Query: 587 EEREKTQQQSQAWNKIAERSRQEQLMMATDGALPTLLPASLRQQVERADPFQRQRTAPKVLWSVKGSQ 655 EEREKT+ SQAWNKIAERSR+EQLMM P++LP S+RQQ ERADPFQRQRTAPKVLWSVK +Q Sbjct: 2 EEREKTELHSQAWNKIAERSRREQLMMT---ETPSVLPPSIRQQAERADPFQRQRTAPKVLWSVKRNQ 66
BLAST of NO16G00160 vs. NCBI_GenBank
Match: XP_001636170.1 (predicted protein [Nematostella vectensis] >EDO44107.1 predicted protein, partial [Nematostella vectensis]) HSP 1 Score: 83.2 bits (204), Expect = 4.600e-12 Identity = 73/306 (23.86%), Postives = 143/306 (46.73%), Query Frame = 0 Query: 348 VAEAHELAKLQVKRHHLEKWIAEPWFAAAIRGSFVRANIDAIEGQPVKGYLLLEVKG-VKHGKTYTSGSLRCDVYLQLHYGKSEPGTKGVGVPIRVVSNSAFQIEEYGQWKQQCHQQESYMPSPADVKRRLEKRHKLITGHQYTEAQISETIARRKKYKAGGSKKDLKHGLGRRKVELERIMEI-----NSSGISRLRKKVEQLKEKGEDKDMKDLEETKALLKTLEEDHARGQAEYNQLLSLFSEEREKTQQQSQAWNKIAERSRQEQLMMATDGALPTLLPASLRQQVERADPFQRQRTAPKVL 648 V+ +L ++++ RH +E+W+ P+FA + G FVR I +G+PV Y + E+K V+ K Y+ G+ + + L+L +G E + + VSN E+ +WK++C +P+ DV++++ K + H Y E I + ++ ++K++ K + + +K EL R EI N ++R +++ L+E+ + L++ +RG + A + I ER+R+ ++ A A L+ + ++ DPF R++T PK++ Sbjct: 179 VSRPDDLERIRLSRHKMERWVHMPFFAKTLAGCFVRIGIGNHDGRPV--YRVAEIKDVVETAKVYSLGATKTNKGLKLRHGPQERVFR-----LEFVSNQRISETEFQRWKEECEAHGIPLPTLDDVEKKV-KDIEEAKNHAYNEEDIEKIVSEKQKFR----KTPFNYAI--KKNELIRRKEIAETSGNHEEAEKIRSELDNLEERAQ---------------VLDKQRSRGLS---------------------AISYINERNRKRNIIEAEKAA-----AEELKTEEKKDDPFTRRKTLPKLV 429
BLAST of NO16G00160 vs. NCBI_GenBank
Match: XP_020894333.1 (RNA polymerase-associated protein RTF1 homolog [Exaiptasia pallida]) HSP 1 Score: 82.4 bits (202), Expect = 7.800e-12 Identity = 55/209 (26.32%), Postives = 110/209 (52.63%), Query Frame = 0 Query: 347 QVAEAHELAKLQVKRHHLEKWIAEPWFAAAIRGSFVRANIDAIEGQPVKGYLLLEVKG-VKHGKTYTSGSLRCDVYLQLHYGKSEPGTKGVGVPIRVVSNSAFQIEEYGQWKQQCHQQESYMPSPADVKRRLEKRHKLITGHQYTEAQISETIARRKKYKAGGSKKDL-KHGLGRRKVELERIMEINSSGISRLRKKVEQLKEKGEDKD 554 Q++ +L ++++ RH +EKW+ P+F A+ G +VR I + EG+PV Y E++ V+ K Y GS + + L+L +G E + + VSN E+ +W+++C + +P+ D++R+ E K + Y E I + ++ +KK++ L K+ L + K E+ + ++ ++R ++E L+E+ ++ D Sbjct: 290 QISSVDDLERIRLSRHKMEKWVHMPFFGDAVVGCYVRIGIGSCEGRPV--YRAAEIRDVVETAKVYNLGSTKTNKGLKLRHGAQERVFR-----LEFVSNQRITETEFQRWREECEEHXIPVPTLEDIERK-EADIKNAVNYMYNEDDIEKIVSEKKKFRKTPFNYALQKNNLSQNKEIAEQTGDHEAA--DKIRLELETLEERAQNLD 488
BLAST of NO16G00160 vs. NCBI_GenBank
Match: XP_023223141.1 (RNA polymerase-associated protein RTF1 homolog [Centruroides sculpturatus]) HSP 1 Score: 81.3 bits (199), Expect = 1.700e-11 Identity = 60/214 (28.04%), Postives = 107/214 (50.00%), Query Frame = 0 Query: 346 QQVAEAHELAKLQVKRHHLEKWIAEPWFAAAIRGSFVRANIDAIEGQPVKGYLLLEVKG-VKHGKTYTSGSLRCDVYLQLHYGKSEPGTKGVGVPIRVVSNSAFQIEEYGQWKQQCHQQESYMPSPADVKRRLEKRHKLITGHQYTEAQISETIARRKKYKAGGSKKDLKHGLGRRKVELERIMEI-----NSSGISRLRKKVEQLKEKGEDKD 554 Q ++ EL+K+++ RH LE+W+ P+F A+ G FVR I +PV Y + E+ G V+ K Y G R + L+L +G E + + VSN F +E+ +WK+ + +P+ +V ++++ I ++Y E + ETI + K G K H +K +L + ++ N + RL ++EQL+E+ ++ D Sbjct: 292 QYISSRQELSKIRLSRHKLERWVHAPFFERAVIGCFVRIGIGTHNNKPV--YRIAEIVGVVETAKIYQLGMTRTNKGLRLKHGNQERVFR-----LEFVSNQDFTDKEFFKWKETMVMERLPLPTSEEVSKKVKDIQDAI-NYEYKEDDV-ETIVKEK-----GRFKKNPHNYAVKKTQLMKQKDMAVLLGNDDEVQRLNSELEQLEERAKELD 491
BLAST of NO16G00160 vs. NCBI_GenBank
Match: XP_023228765.1 (RNA polymerase-associated protein RTF1 homolog [Centruroides sculpturatus] >XP_023228767.1 RNA polymerase-associated protein RTF1 homolog [Centruroides sculpturatus]) HSP 1 Score: 80.5 bits (197), Expect = 3.000e-11 Identity = 65/260 (25.00%), Postives = 126/260 (48.46%), Query Frame = 0 Query: 348 VAEAHELAKLQVKRHHLEKWIAEPWFAAAIRGSFVRANIDAIEGQPVKGYLLLEVKG-VKHGKTYTSGSLRCDVYLQLHYGKSEPGTKGVGVPIRVVSNSAFQIEEYGQWKQQCHQQESYMPSPADVKRRLEKRHKLITGHQYTEAQISETIARRKKYKAGGSKKDLKHGLGRRKVELERIMEI-----NSSGISRLRKKVEQLKEKGEDKDMKDLEETKALLKTLEEDHARGQAEYNQLLSLFSEEREKTQQQSQAWNK 602 V+ EL ++++ RH LE+W+ P+FA + G FVR I + G+PV Y + E+ G V+ GK Y G+ R + L++++G+ E + + VSN F E+ +WK+ + +P+ D+ R++ + +QY + I I ++K+K H RK +L + E+ N S +L +++QL+E+ + D A+ E++ R + + ++ E R+K +++ + + Sbjct: 326 VSNKEELGQIRLSRHKLERWVHAPFFAKTVTGCFVRVGIGSNNGRPV--YRVAEITGVVETGKVYQLGNTRTNKGLKVNHGRQERIFR-----LEFVSNQDFLDNEFFKWKEALLLEGLSLPTVEDINRKIRDIQDAM-NYQYKDDDIETIIKEKEKFKR------TPHNYAVRKTQLIKQKELAEQNGNLSEAHQLATELDQLEERAKKLDKLRTSNISAISYINEKNRQRNIVDAEK--AILEEARQKREREDDPFTR 569
BLAST of NO16G00160 vs. NCBI_GenBank
Match: XP_023714777.1 (RNA polymerase-associated protein RTF1 homolog [Cryptotermes secundus] >PNF26357.1 RNA polymerase-associated protein Rtf1 [Cryptotermes secundus]) HSP 1 Score: 80.5 bits (197), Expect = 3.000e-11 Identity = 57/214 (26.64%), Postives = 111/214 (51.87%), Query Frame = 0 Query: 346 QQVAEAHELAKLQVKRHHLEKWIAEPWFAAAIRGSFVRANIDAIEGQPVKGYLLLEVKGV-KHGKTYTSGSLRCDVYLQLHYGKSEPGTKGVGVPIRVVSNSAFQIEEYGQWKQQCHQQESYMPSPADVKRRLEKRHKLITGHQYTEAQISETIARRKKYKAGGSKKDLKHGLGRRKVELERIMEINSS-----GISRLRKKVEQLKEKGEDKD 554 Q V + EL K+++ RH +E+++ P+F +RG FVR I G+PV Y + E+ GV + GK Y G+ R + L+L +G E + + +SN F E+ +W++ C Q MP+ +++++L K K +++ E I + + ++++K + +K +L + ++ S SR+++K++ L+E+ E+ D Sbjct: 341 QYVTKREELNKIRLSRHKMERFVHLPFFDRVVRGCFVRIGIGNHNGKPV--YRVCEISGVCETGKIYQLGNTRTNKGLKLRHGAQERVFR-----LEFISNQDFTESEFMKWRETCALQGISMPTHDELEQKL-KDIKEAMIYEFKEEDIEKIVREKERFKTN------PYNYAMKKTQLMKERDMAQSRGDDLEASRIQQKIQALEERAEELD 540
BLAST of NO16G00160 vs. NCBI_GenBank
Match: XP_021377975.1 (RNA polymerase-associated protein RTF1 homolog [Mizuhopecten yessoensis] >OWF38612.1 RNA polymerase-associated protein RTF1-like [Mizuhopecten yessoensis]) HSP 1 Score: 80.1 bits (196), Expect = 3.900e-11 Identity = 61/211 (28.91%), Postives = 109/211 (51.66%), Query Frame = 0 Query: 346 QQVAEAHELAKLQVKRHHLEKWIAEPWFAAAIRGSFVRANIDAIEGQPVKGYLLLEVKG-VKHGKTYTSGSLRCDVYLQLHYGKSEPGTKGVGVPIRVVSNSAFQIEEYGQWKQQCHQQESYMPSPADVKRRLEKRHKLITGHQYTEAQISETIARRKKYKAGGSKKDLKHGLGRRKVELERIMEINSSGISRLRKKVEQLKEKGEDKDMK 556 Q V+ EL K+++ RH LEKW P+F ++G +VR I EGQ V Y + E+ G V K Y G+ R + L+L +G SE + + VSN F E+ +WK+ +P+ +++R+ + + +++ E I E +A + K+K +K L ++ E+ I E + G S++++++EQL+E+ + D + Sbjct: 317 QFVSTKEELTKVKISRHKLEKWCHMPFFRKTVQGCYVRIGIGNHEGQAV--YRVAEIIGVVDTAKVYQLGTTRTNKGLKLRHGHSERVYR-----LEFVSNQDFTDSEFFKWKEAMMLGGLTLPTIDEIERKFKDIRDALQ-YKFKENDIEEIVADKLKFKKNPHNYAVKKTLLLKQKEVADI-EGDQVGQSKIKQELEQLEERATELDRR 518
BLAST of NO16G00160 vs. NCBI_GenBank
Match: XP_022196334.1 (RNA polymerase-associated protein RTF1 homolog [Nilaparvata lugens]) HSP 1 Score: 79.0 bits (193), Expect = 8.700e-11 Identity = 54/214 (25.23%), Postives = 111/214 (51.87%), Query Frame = 0 Query: 346 QQVAEAHELAKLQVKRHHLEKWIAEPWFAAAIRGSFVRANIDAIEGQPVKGYLLLEVKG-VKHGKTYTSGSLRCDVYLQLHYGKSEPGTKGVGVPIRVVSNSAFQIEEYGQWKQQCHQQESYMPSPADVKRRLEKRHKLITGHQYTEAQISETIARRKKYKAGGSKKDLKHGLGRRKVELERIMEI-----NSSGISRLRKKVEQLKEKGEDKD 554 Q ++ +L K+++ RH +E+++ P+F ++G FVR I G+PV Y + E+ G V+ GK Y G+ R + L+L +G E + + +SN F E+ +WK+ C Q +P+ D++++L+ + +T +++ E I + I + +++ + +K EL + ++ N ++L KK+++L+E+ + D Sbjct: 364 QFISTKEDLNKIRLSRHKMERFVHLPFFDRVVQGCFVRIGIGNHNGKPV--YRVTEISGVVETGKIYQLGTTRTNKGLKLRHGAQERVFR-----LEFISNQEFTDSEFFKWKETCALQGISVPTQDDLEKKLKDIKEAMT-YEFKEEDIEKIIKEKGRFRTN------PYNYAMKKTELMKERDMAHSLGNQEEAAQLNKKLQELEERANELD 563
BLAST of NO16G00160 vs. NCBI_GenBank
Match: XP_019849879.1 (PREDICTED: RNA polymerase-associated protein RTF1 homolog [Amphimedon queenslandica]) HSP 1 Score: 78.6 bits (192), Expect = 1.100e-10 Identity = 64/244 (26.23%), Postives = 117/244 (47.95%), Query Frame = 0 Query: 345 NQQVAEAHELAKLQVKRHHLEKWIAEPWFAAAIRGSFVRANIDAIEGQPVKGYLLLEVKGV-KHGKTYTSGSLRCDVYLQLHYGKSEPGTKGVGVPIRVVSNSAFQIEEYGQWKQQCHQQESYMPSPADVKRRLEKRHKLITGHQYTEAQISETIARRKKYKAGGSKKDLKHGLGRRKVELERIMEI-----NSSGISRLRKKVEQLKEKGEDKDMKDLEETKALLKTLEEDHARGQAEYNQLL 583 N+ + EL+K+++ R LEKW+ P+FA IRG +VR I EG+ + Y + E+ V + K YT G + + L+L +G+ E + + +SNSAF +E+ +WK + +P+ +V++++++ K + E I I ++K++ H K L R EI ++ + L +K+E+L+E+ E+ D + A+ E + R A + L Sbjct: 272 NRPINTIEELSKIKMSRFRLEKWVHMPFFADVIRGCYVRIGIGQHEGRMI--YRVCEIVSVHETSKVYTLGGTKTNKGLKLRFGQQERIFR-----MEYISNSAFTDQEFSKWKAENEAHSIKLPTLFEVEKKVKEIEKYKSA-SLKEEDIDRIIQEKQKFQKN------PHNYALTKNRLMREKEIAEQTGSTEKATDLARKLEELEERAEELDKQRTRGLSAISYINERNRQRNVARAEEAL 501
BLAST of NO16G00160 vs. NCBI_GenBank
Match: XP_020614419.1 (RNA polymerase-associated protein RTF1 homolog [Orbicella faveolata]) HSP 1 Score: 78.2 bits (191), Expect = 1.500e-10 Identity = 73/314 (23.25%), Postives = 141/314 (44.90%), Query Frame = 0 Query: 346 QQVAEAHELAKLQVKRHHLEKWIAEPWFAAAIRGSFVRANIDAIEGQPVKGYLLLEVKG-VKHGKTYTSGSLRCDVYLQLHYGKSEPGTKGVGVPIRVVSNSAFQIEEYGQWKQQCHQQESYMPSPADVKRRL----EKRHKLITGHQYTEAQISETIARRKKY-KAGGSKKDLKHGLGRRKVELERIMEINSSGISRLRKKVEQLKEKGEDKDMKDLEETKALLKTLEEDHARGQAEYNQLLSLFSEEREKTQQQSQAWNKIAERSRQEQLMMATDGALPTLLPASLRQQVERADPFQRQRTAPKVLWSVKGS 654 Q+VA +L +++V RH LE+W+ P+F + G +VR I + + +PV Y + E++ V+ K Y+ G+ + + L+L +G E + + VSN F E+ +WK++C +P+ +V + + RH + Y E + + +A ++K+ K + K+ L R K E+ + + ++R ++E L+EK + D + A+ E + R E AE++ E++M + ++ADPF R++T P+++ VK + Sbjct: 289 QRVASVDDLERIRVSRHKLERWVHMPFFGKIVAGCYVRVGIGSHDARPV--YRVAEIRDVVETAKVYSLGTTKTNKGLKLKHGNQERVFR-----LEFVSNQRFTETEFIRWKEECESHGIPLPTLDEVDNKATQFNDARH-----YMYNEDDVDKIVAEKQKFRKTPFNYAQKKNHLMRSKEVAEQTGNLEEA--EKIRGELEDLEEKAQHLDKVRSKNLSAISYINERNRKRNIVE-------------------------AEKAAAEEMM----------------NEEQKADPFTRRKTLPQLVSMVKNA 547 The following BLAST results are available for this feature:
BLAST of NO16G00160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following gene feature(s) are orthologous to this gene:
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G00160 ID=NO16G00160|Name=NO16G00160|organism=Nannochloropsis oceanica|type=gene|length=4672bpback to top protein sequence of NO16G00160.3 >NO16G00160.3-protein ID=NO16G00160.3-protein|Name=NO16G00160.3|organism=Nannochloropsis oceanica|type=polypeptide|length=919bpback to top protein sequence of NO16G00160.2 >NO16G00160.2-protein ID=NO16G00160.2-protein|Name=NO16G00160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=693bpback to top protein sequence of NO16G00160.1 >NO16G00160.1-protein ID=NO16G00160.1-protein|Name=NO16G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=908bpback to top Synonyms
Publications
|