NO15G03060, NO15G03060 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G03060
Unique Name	NO15G03060
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1200
Alignment location	chr15:842349..843548 +

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:842349..843548 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005358	Puta_zinc/iron-chelating_dom

Homology

[Close]

BLAST of NO15G03060 vs. NCBI_GenBank
Match: XP_005854969.1 (hypothetical protein NGA_0387200 [Nannochloropsis gaditana CCMP526] >EKU21396.1 hypothetical protein NGA_0387200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 289.3 bits (739), Expect = 1.500e-74
Identity = 144/248 (58.06%), Postives = 169/248 (68.15%), Query Frame = 0

Query:   78 PILSSFSLFLLLIVVDGWLVPFTS---PMTTSRICIHRSPSLTT---------TATALFSSLLPSISPSAGPPAPWFIDGVKFECTACGKCCRVKGDVWLSPSEVEGAARFLKLTPAQFLTEWGEEEKHNWVRLKSRIFPPEKGGGEGCVFLDDESKCSIYEARPLQCRTYPYWPRVMRSREAWEDERVVPDGEAGEEETRVTGRRRWDPVEGGCEGIENPDAGVVDFNIVRQQLLMQIGYNRALPSE 314
            P + +  LF + I V+GW +PF +     + SR     SP LT           AT LF               PWFIDGVKFECTACGKCC+V+GDVWLSP+EVE AAR+L L+P  FL  WGEEE+  W+ LKSR F P +GGGEGCVFL D+ KCSIY+ARPLQCRTYPYWPR+M SRE WE E+VV +GE GE        RRWDPVEGGCEGIE+ +AG+VDFN VR QLL+QIGYNRALP +
Sbjct:   19 PTILALGLFWVAI-VEGWRIPFVAQSWKYSISRSQHQLSPRLTAFNGLKSSPRVATRLFPXXXXXXXXXXXXXPPWFIDGVKFECTACGKCCKVQGDVWLSPNEVECAARYLSLSPESFLATWGEEERRGWILLKSRTFSPAQGGGEGCVFLSDDLKCSIYDARPLQCRTYPYWPRIMHSRETWEAEKVVREGEEGE-------GRRWDPVEGGCEGIEHAEAGMVDFNKVRLQLLLQIGYNRALPGD 258

[Close]

BLAST of NO15G03060 vs. NCBI_GenBank
Match: EJK46954.1 (hypothetical protein THAOC_34358 [Thalassiosira oceanica])

HSP 1 Score: 146.0 bits (367), Expect = 2.000e-31
Identity = 75/180 (41.67%), Postives = 97/180 (53.89%), Query Frame = 0

Query:  140 PWFIDGVKFECTACGKCCRVKGDVWLSPSEVEGAARFLKLTPAQFLTEW------------GEEEKHNWVRLKSRIFPPEKGGGEGCVFLDDESKCSIYEARPLQCRTYPYWPRVMRSREAWEDERVVPDGEAGEEETRVTGRRRWDPVEGGCEGIENPDAGV-----VDFNIVRQQLLM 303
            P+F DG+ FECT CGKCCRV GDVWLSP EV G +  L +T   F  +              EE + +W+ LK      +K     C FL +  +C+IY ARP+QC +YP+WP ++ S E WEDE VVPD          +G R W+  EGGCEGI  P A        D  IV +Q ++
Sbjct:   32 PFFEDGLGFECTECGKCCRVSGDVWLSPEEVAGVSALLNITAKAFREQHVRAVLSPSDAIEDEEYEGSWMCLK------KKQHDGSCTFLKESGQCAIYSARPIQCESYPFWPSILNSMETWEDEAVVPDNTPLR-----SGERYWNADEGGCEGIIAPSASSTSENNADVRIVERQTIV 200

[Close]

BLAST of NO15G03060 vs. NCBI_GenBank
Match: EJK63747.1 (hypothetical protein THAOC_15580 [Thalassiosira oceanica])

HSP 1 Score: 139.8 bits (351), Expect = 1.400e-29
Identity = 85/219 (38.81%), Postives = 109/219 (49.77%), Query Frame = 0

Query:  102 PMTTSRICIHRSPSLTTTATALFSSLLPSISPSAGP-PAPWFIDGVKFECTACGKCCRVKGDVWLSPSEVEGAARFLKLTPAQFLTEW------------GEEEKHNWVRLKSRIFPPEKGGGEGCVFLDDESKCSIYEARPLQCRTYPYWPRVMRSREAWEDERVVPDGEAGEEETRVTGRRRWDPVEGGCEGIENPDAGV-----VDFNIVRQQLLM 303
            P ++SR    R  S+     +L  SL   I     P   P+F DG+ FECT CGKCCRV GDVWLSP EV G +  L +T   F  +              EE   +W+ LK      +K     C FL +  +C+IY ARP+QC TYP+WP ++ S E WEDE VV D          +G R W+  EGGCEGI  P A        D  IV +Q ++
Sbjct:   19 PTSSSRDLSQRPLSINPQKKSL-PSLPRRIRARIAPFTLPFFEDGLGFECTECGKCCRVSGDVWLSPEEVAGVSALLNITAKAFREQHVRAVLSPSDAIEDEEYGGSWMCLK------KKQHDGSCTFLKESGQCAIYSARPVQCETYPFWPSILNSMETWEDEAVVQDNTPLR-----SGERYWNADEGGCEGIIAPSASSTSENNADVRIVERQTIV 225

[Close]

BLAST of NO15G03060 vs. NCBI_GenBank
Match: CEM11365.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 127.5 bits (319), Expect = 7.400e-26
Identity = 77/208 (37.02%), Postives = 103/208 (49.52%), Query Frame = 0

Query:   98 PFTSPMTTSRICIHRSPSLTTTATALFSSLLPSISPSAGPPAPWF--IDGVKFECTACGKCCRVKGDVWLSPSEVEGAARFLKLTPAQFLTEWGEE--EKHNWVRLKSRIFPPEKGGGEGCVFLDDESKCSIYEARPLQCRTYPYWPRVMRSREAWEDERVVPDGEAGEEETRVTGRRRWDPVEGGCEGIENPDAGVVDFNIVRQQLL 302
            P T P    +   H+  S     T   S + PS    +     WF    GV+F+CT CGKCCR +G+VW+SP E      +L +  A F+  + EE  +   W  L+        GG   C+FL   ++CSIY  RP QC TYP+WP ++RS+EAWE E V PD E   + +      RW    GGCEGI + +        VRQ LL
Sbjct:   82 PATQPRNALKASRHQDDS-PAADTEEDSVIFPSYGDGSRRRVRWFDTEGGVRFKCTECGKCCRTRGNVWVSPQEQRAIIDYLSIDGAAFIELYTEEGVDNDGWRLLRDVPDDEWAGGTSRCIFLSG-TECSIYPVRPFQCATYPFWPPMLRSKEAWESEAVWPDDERAGDGS----LPRWTYEGGGCEGIWSDER-------VRQHLL 276

[Close]

BLAST of NO15G03060 vs. NCBI_GenBank
Match: XP_002290703.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92455.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 122.9 bits (307), Expect = 1.800e-24
Identity = 68/169 (40.24%), Postives = 89/169 (52.66%), Query Frame = 0

Query:  126 SLLPSISPSAGPPAPWFIDGVKFECTACGKCCRVKGDVWLSPSEVEGAARFL----------KLTPAQFLTEWGEEEKHNWVRLKSRIFPPEKGGGEG-CVFLDDESKCSIYEARPLQCRTYPYWPRVMRSREAWEDERVVPDGEAGEEETRVTGRRRWDPVEGGCEGI 284
            + LP+  P A    PW+ +G++F CT CGKCCRV GDVWL+P EV    + L          K    +   E G+  + +W+ LK           EG CVFLD   KC IY+ RP+QC TYP+WP ++ S + W DE V+PD    +      G R W    GGCEGI
Sbjct:   50 AFLPTNYPLA---LPWYENGLEFSCTGCGKCCRVDGDVWLAPEEVTSVMKHLGNNEVDEFRRKYIRGEISPEDGDHTQ-SWMCLKR---------NEGACVFLDPLGKCGIYDVRPVQCSTYPFWPSLLESEDDWIDESVLPDDVPLDNS---LGDRYWSSELGGCEGI 202

[Close]

BLAST of NO15G03060 vs. NCBI_GenBank
Match: XP_002178604.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50269.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 115.5 bits (288), Expect = 2.900e-22
Identity = 66/188 (35.11%), Postives = 95/188 (50.53%), Query Frame = 0

Query:  130 SISPSAGPPAP-WF--IDGVKFECTACGKCCRVKGDVWLSPSEVEGAARFLKLTPAQFLTEWGE-------EEKHNWVRLKSRIFPPEKGGGEGCVFLD-DESKCSIYEARPLQCRTYPYWPRVMRSREAWEDE--RVVPDGEAGEEETRVTGRRRWDPVEGGCEGIENPDAGVVDFNIVRQQLLMQI 305
            S++  A   AP W   I  + FECTACGKCC+  G V+LS  E   AA  + ++  +F+  +         E  + WVRLK +           C+FL+ D ++C IYEARP QCRTYP+WP ++ S +AW+ E  R+  D E+   E        W P  GGCEG+   D       +  + +  Q+
Sbjct:   71 SLAQFARDDAPAWLQTIASLPFECTACGKCCKTIGSVYLSSEETWQAAELMNISSTEFIEAYASDIIRDSAEASNTWVRLKEKEVLKGTDHSPACIFLNSDTNQCQIYEARPTQCRTYPFWPNLLASPDAWDAEVRRMDHDSESTLLE--------WTPDAGGCEGMMILDQNSTTLGVPMKDVYRQL 250

[Close]

BLAST of NO15G03060 vs. NCBI_GenBank
Match: WP_014162836.1 (YkgJ family cysteine cluster protein [Thermovirga lienii] >AER66417.1 protein of unknown function UPF0153 [Thermovirga lienii DSM 17291])

HSP 1 Score: 109.8 bits (273), Expect = 1.600e-20
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 0

Query:  141 WFIDGVKFECTACGKCCRVK-GDVWLSPSEVEGAARFLKLTPAQFLTEWGEEEKHNWVRLKSRIFPPEKGGGEGCVFLD-DESKCSIYEARPLQCRTYPYWPRVMRSREAWEDER 254
            W+  G++F C  CG+CCR + G VW++P EV+  A FL LT  +FL+++          +  R+   EK  GE CVF D D +KCSIYE RPLQCR +P+WP +M+++E WE E+
Sbjct:    9 WWSGGLRFSCLGCGRCCRGEPGCVWITPEEVKKLAEFLSLTETKFLSKY-------TYSVDGRVSLREKQNGE-CVFYDSDTNKCSIYEYRPLQCRLFPFWPSLMKNKENWEWEK 115

[Close]

BLAST of NO15G03060 vs. NCBI_GenBank
Match: CCB88456.1 (uncharacterized protein HP_0274 [Simkania negevensis Z])

HSP 1 Score: 103.2 bits (256), Expect = 1.500e-18
Identity = 54/161 (33.54%), Postives = 79/161 (49.07%), Query Frame = 0

Query:  141 WFIDGVKFECTACGKCCR-VKGDVWLSPSEVEGAARFLKLTPAQFLTEWGEEEKHNWVRLKSRIFPPEKGGGEGCVFLDDESKCSIYEARPLQCRTYPYWPRVMRSREAWEDERVVPDGEAGEEETRVTGRRRWDPVEGGCEGIENPDAGVVDFNIVRQQL 301
            W+ DG++F+CT+CG CC    G VWL   ++E  A+ L L    FL  +  +       + SRI   E      CVFL D+  C++YE RP QC+T+P+W  V+ S EAWE+                         +  CEGI++PDA  +    ++ QL
Sbjct:   11 WYKDGLRFKCTSCGACCTGAPGYVWLEKKDIERLAKRLNLPQDVFLKRYTRQ-------VGSRISLTEDPLSYDCVFLKDKKICTLYEDRPKQCKTFPFWKDVLESPEAWEE------------------------TKERCEGIDHPDAPCIPLEEIQNQL 140

[Close]

BLAST of NO15G03060 vs. NCBI_GenBank
Match: WP_079891526.1 (YkgJ family cysteine cluster protein [Simkania negevensis])

HSP 1 Score: 103.2 bits (256), Expect = 1.500e-18
Identity = 54/161 (33.54%), Postives = 79/161 (49.07%), Query Frame = 0

Query:  141 WFIDGVKFECTACGKCCR-VKGDVWLSPSEVEGAARFLKLTPAQFLTEWGEEEKHNWVRLKSRIFPPEKGGGEGCVFLDDESKCSIYEARPLQCRTYPYWPRVMRSREAWEDERVVPDGEAGEEETRVTGRRRWDPVEGGCEGIENPDAGVVDFNIVRQQL 301
            W+ DG++F+CT+CG CC    G VWL   ++E  A+ L L    FL  +  +       + SRI   E      CVFL D+  C++YE RP QC+T+P+W  V+ S EAWE+                         +  CEGI++PDA  +    ++ QL
Sbjct:   48 WYKDGLRFKCTSCGACCTGAPGYVWLEKKDIERLAKRLNLPQDVFLKRYTRQ-------VGSRISLTEDPLSYDCVFLKDKKICTLYEDRPKQCKTFPFWKDVLESPEAWEE------------------------TKERCEGIDHPDAPCIPLEEIQNQL 177

[Close]

BLAST of NO15G03060 vs. NCBI_GenBank
Match: PJD93448.1 (zinc/iron-chelating domain-containing protein [Parachlamydia sp.])

HSP 1 Score: 102.1 bits (253), Expect = 3.300e-18
Identity = 54/162 (33.33%), Postives = 86/162 (53.09%), Query Frame = 0

Query:  140 PWFIDGVKFECTACGKCCR-VKGDVWLSPSEVEGAARFLKLTPAQFLTEWGEEEKHNWVRLKSRIFPPEKGGGEGCVFLDDESKCSIYEARPLQCRTYPYWPRVMRSREAWEDERVVPDGEAGEEETRVTGRRRWDPVEGGCEGIENPDAGVVDFNIVRQQL 301
            PW+ DG++F+CT CGKCC    G VW+S  E++  A  L ++   F  ++     + +  ++ +     KGG   C+FL D+ KC +Y+ARP QCR +P+WP  ++S E+W+         A +E                CEGI NPDA +V ++ + + L
Sbjct:    4 PWYKDGLRFKCTECGKCCTGPSGFVWVSEEEMQAMADTLDISLELFKKKYVRHRDNRYALVERK----TKGGDYDCIFLKDK-KCEVYQARPQQCRIFPWWPENLKSEESWQ--------SAAQE----------------CEGI-NPDAPLVPYSEIVKSL 135

The following BLAST results are available for this feature:

BLAST of NO15G03060 vs. NCBI_GenBank

BLAST of NO15G03060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005854969.1	1.500e-74	58.06	hypothetical protein NGA_0387200 [Nannochloropsis ...	[more]
EJK46954.1	2.000e-31	41.67	hypothetical protein THAOC_34358 [Thalassiosira oc...	[more]
EJK63747.1	1.400e-29	38.81	hypothetical protein THAOC_15580 [Thalassiosira oc...	[more]
CEM11365.1	7.400e-26	37.02	unnamed protein product [Vitrella brassicaformis C...	[more]
XP_002290703.1	1.800e-24	40.24	predicted protein [Thalassiosira pseudonana CCMP13...	[more]
XP_002178604.1	2.900e-22	35.11	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
WP_014162836.1	1.600e-20	45.22	YkgJ family cysteine cluster protein [Thermovirga ...	[more]
CCB88456.1	1.500e-18	33.54	uncharacterized protein HP_0274 [Simkania negevens...	[more]
WP_079891526.1	1.500e-18	33.54	YkgJ family cysteine cluster protein [Simkania neg...	[more]
PJD93448.1	3.300e-18	33.33	zinc/iron-chelating domain-containing protein [Par...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL146	nonsL146	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR006	ncniR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR063	ngnoR063	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001271	NSK001271	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO15G03060.1	NO15G03060.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588179	gene_4870	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO15G03060.1	NO15G03060.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO15G03060 ID=NO15G03060|Name=NO15G03060|organism=Nannochloropsis oceanica|type=gene|length=1200bp
TCCGGGGCGAATTTCGGAGTAGACATCCTTGCAAGGCCTTTCATGACTCT
GCATTGGGTAGTCTCAACGCAAGTCATGGTAGGAGACAGTTAAGTGAGGC
AAGATGGGGCAAAATGAACCTCCTCTGGTGCCACCAAGCAACGCACGGCG
AACGATGACACGTACACGATTGCAGATGAGGATAGATACAAACCCGCACT
CAAAACAGTACCCCGTCAACTCACGTCCATTTTTCTCTGTAACTCCTGCT
TCAGGTCGTCGCTGGTGCCACTTAGCCATGGTACCAGCAAAGCTAGCTGT
CCCTCGAAAATCAAGATGTGGGCGTCGTCACCTTCCCATTCTTTCTTCCT
TCTCGTTATTCCTCCTTCTCATTGTCGTGGACGGCTGGCTCGTCCCCTTT
ACCTCTCCTATGACAACGAGTAGAATATGTATCCACAGAAGCCCATCCCT
TACAACCACCGCAACTGCACTCTTCTCCTCCCTCCTCCCTTCCATATCGC
CCTCTGCTGGCCCGCCGGCCCCATGGTTTATAGATGGCGTCAAGTTCGAA
TGCACGGCTTGCGGGAAATGCTGTCGTGTCAAAGGCGACGTATGGCTGAG
TCCCAGTGAAGTGGAAGGCGCCGCGCGCTTCCTTAAGCTAACCCCGGCTC
AATTTTTAACTGAGTGGGGGGAGGAAGAGAAGCATAACTGGGTCCGTTTG
AAGAGTCGAATTTTCCCGCCTGAGAAGGGGGGAGGGGAAGGGTGTGTATT
CTTGGATGATGAGTCAAAGTGCTCGATATATGAGGCACGACCTTTACAAT
GTCGCACATATCCTTACTGGCCGAGGGTGATGCGGTCGAGGGAGGCATGG
GAGGATGAGCGAGTGGTACCGGATGGGGAGGCAGGGGAGGAGGAGACGAG
GGTGACAGGAAGGAGGAGGTGGGATCCGGTGGAGGGAGGATGTGAGGGGA
TTGAGAACCCTGATGCAGGCGTAGTAGACTTCAATATCGTGAGGCAGCAG
CTCTTGATGCAGATCGGGTACAACCGGGCCTTGCCGAGCGAGAGGAAGGC
GTAAATCATCATACTTGATGTAAATCATCACACTTGCTGTATGACACGAA
GGACGAAGGTGATAAAGGGAGAAGGATATGAATCACCATTTCAACTGTGT
GGACAAAAGGGGGAAGGGCGGAAAGAATTGACAATTGATTGAGAAAAAGA

protein sequence of NO15G03060.1

>NO15G03060.1-protein ID=NO15G03060.1-protein|Name=NO15G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MGQNEPPLVPPSNARRTMTRTRLQMRIDTNPHSKQYPVNSRPFFSVTPAS
GRRWCHLAMVPAKLAVPRKSRCGRRHLPILSSFSLFLLLIVVDGWLVPFT
SPMTTSRICIHRSPSLTTTATALFSSLLPSISPSAGPPAPWFIDGVKFEC
TACGKCCRVKGDVWLSPSEVEGAARFLKLTPAQFLTEWGEEEKHNWVRLK
SRIFPPEKGGGEGCVFLDDESKCSIYEARPLQCRTYPYWPRVMRSREAWE
DERVVPDGEAGEEETRVTGRRRWDPVEGGCEGIENPDAGVVDFNIVRQQL
LMQIGYNRALPSERKA*

Synonyms

Publications