NO15G03020.1, NO15G03020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03020.1
Unique NameNO15G03020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1866
Alignment locationchr15:835050..837048 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:835050..837048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03020.1 vs.
Match: EWM22294.1 (hypothetical protein Naga_100933g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 234.2 bits (596), Expect = 7.000e-58
Identity = 100/133 (75.19%), Postives = 118/133 (88.72%), Query Frame = 0 
Query:  261 KVTAWWDAHKPSYFRPAPRADGSAPPSWADLVKLHGPVFIVWWGSLWALGAGGLFLGFEYHFFGAGVDAMSLAREWGVDQVVDLSGLPPRLGNVGVAVAFNEVLEVVRFPFALMTVKYWTRWWYGVQGKEMPK 394
            +VTAWWD HKP+YF+P PRADGS PPSW +LV++HGP F+VWWG+LW LGAGGLFLGFE+H FGA VDA++LAR WGVD+VVDLSG+PP LGN+GVA+A NEVLEVVRFP AL+TVK WTRWWY V+GK MP+
Sbjct:    7 QVTAWWDQHKPAYFKPKPRADGSLPPSWGELVRIHGPPFLVWWGTLWVLGAGGLFLGFEHHLFGADVDALTLARAWGVDKVVDLSGVPPSLGNMGVAIACNEVLEVVRFPLALLTVKPWTRWWYRVRGKTMPE 139
The following BLAST results are available for this feature:
BLAST of NO15G03020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22294.17.000e-5875.19hypothetical protein Naga_100933g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03020NO15G03020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03020.1NO15G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03020.1.cds1NO15G03020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03020.1.cds2NO15G03020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03020.1 ID=NO15G03020.1|Name=NO15G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp
ATACACACAGCCTGACAGTGCCGCACCGCGTGCCGCGAGGATGCGCCGTC
TATTGCAGCCGCGGTTTCACTCAGCGGTGGCAAGACTGATGATTCCTACT
GGCACACGACCTTATCATCACCACCACCACCACCATCCCCTGGAGCAGCA
CCAATTTCACCACCACCATCGGGGACACAGACAGCAACAGCAACAGCGTC
TCTACTCCTTTGGCTCATCCTCGTCGCACGCATCAATTGGCTTGAGTAGC
AGTAATGACGACAAACGGAAAGGGTCCCTGCCTCCCCTCCCGCATGGCCT
CGATCCCTCCCGTTCCTTCCCACTCTCCTCCTCCTCCCCCTCCTCCTCCT
CCTTTTCCTCCTCAATCTATTTTAGGGATTCCTCTACTTTGGCCACTATC
GCTGCCATCTCTTGCTACCACGGCAGGAGAAGCACTCTTCTATCCCCTAC
TCAACGCCAACTACGTGCGATCTGCGGCTCCCCTCCTTCTTCCTTCTCCT
CCCCTTCCTCTGCAACCCCTCCTCCACCCCCTCCCCCTGACACACCCACC
AAAAAACCCACATGGAAAGATATGTTCAAAAAATACGGGCCTGTCTTCCT
CATCTATTGGAATGGGGTCTGGTTGCTGAGTGGCCTTTCCATCTATGGTG
CACTTGAACTAGGGAATGTAGACCCCCTCCCTCTCGCCCGTGCCATTCAC
CTTGACTCCCTCATTGATCTCGACAAGATTGGACCTGCTCATGGAAACGT
GGCAGTTGCCATCGTTTTGAATGAGGTAGCGGAGCTGGTCCGGTTTCCCT
TTGTCCTGGCTACGGTGCCTAAGGTGACTGCTTGGTGGGATGCACATAAG
CCCTCGTACTTTCGCCCTGCTCCTCGGGCAGATGGCTCCGCCCCTCCCTC
CTGGGCGGACCTAGTCAAGTTGCACGGACCCGTATTTATCGTGTGGTGGG
GTTCGTTGTGGGCATTGGGTGCAGGTGGGTTGTTCCTGGGCTTTGAATAT
CACTTTTTCGGTGCGGGCGTGGACGCCATGTCTTTGGCCAGGGAGTGGGG
GGTCGATCAGGTGGTGGACCTGTCGGGGCTACCCCCTCGTCTGGGCAACG
TAGGAGTGGCGGTGGCGTTCAATGAGGTGTTGGAGGTGGTGCGATTTCCG
TTCGCGTTGATGACTGTCAAGTACTGGACGCGGTGGTGGTATGGTGTCCA
AGGAAAGGAAATGCCGAAATGAAGAATTGACTGAAAGGATGCAAAAGAAC
TAGTCGAGAACAACGCTAGAAAATGAAGCTTATGCATCATCAGTGTAGTG
CCTACGAACAACCCAAGCCAGCCATGTACCTTTAATCTAACCTTGTAAAC
GCTCCAGCTTGTAGGCACACTTATTCCGGCGTGCCGCAGCGCTTGAGACA
GTCCTCTGTGACAGAGCTGCACTACATGCGGACGTGTGAGAGTGTATCAA
CACAGCGACAAGTGCACAGCACCATGCCCCTCGATCGTTGTCATACTATT
AGGCATTTATGCGGAACTAGACAAGGTCGTGGCACATGTATGCTCCCCTT
CCATTGTAACCCCCACCGTGGAGAAGCCTCCTATTGGACATCGGCTTGTG
TCAGCCTTAGCCATTCTATTTTTCCGGTAGGGACCTGGATCTGGAATCGG
ACACAGGCAGGGATTGTGGACCAACCCAGCCTCCAACGCCGTTCTACCAC
ATGTATGTCTCAACCAATGGAAATTAAGGGACGCTCGAGCCCGTGCATGC
CCACAAGTTGATCTTTCGAACTGCCGTCGTTCTTTGCCATAATTCTCTTC
GAGAGGGAAAAGGAAGACACATGTTCATTTGAGATGGAAAGAAAATAGAA
CCAAAAGGGGGGGACA
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protein sequence of NO15G03020.1

>NO15G03020.1-protein ID=NO15G03020.1-protein|Name=NO15G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MRRLLQPRFHSAVARLMIPTGTRPYHHHHHHHPLEQHQFHHHHRGHRQQQ
QQRLYSFGSSSSHASIGLSSSNDDKRKGSLPPLPHGLDPSRSFPLSSSSP
SSSSFSSSIYFRDSSTLATIAAISCYHGRRSTLLSPTQRQLRAICGSPPS
SFSSPSSATPPPPPPPDTPTKKPTWKDMFKKYGPVFLIYWNGVWLLSGLS
IYGALELGNVDPLPLARAIHLDSLIDLDKIGPAHGNVAVAIVLNEVAELV
RFPFVLATVPKVTAWWDAHKPSYFRPAPRADGSAPPSWADLVKLHGPVFI
VWWGSLWALGAGGLFLGFEYHFFGAGVDAMSLAREWGVDQVVDLSGLPPR
LGNVGVAVAFNEVLEVVRFPFALMTVKYWTRWWYGVQGKEMPK*
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mRNA from alignment at chr15:835050..837048+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03020.1 ID=NO15G03020.1|Name=NO15G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1999bp|location=Sequence derived from alignment at chr15:835050..837048+ (Nannochloropsis oceanica)
ATACACACAGCCTGACAGTGCCGCACCGCGTGCCGCGAGGATGCGCCGTC
TATTGCAGCCGCGGTTTCACTCAGCGGTGGCAAGACTGATGATTCCTACT
GGCACACGACCTTATCATCACCACCACCACCACCATCCCCTGGAGCAGCA
CCAATTTCACCACCACCATCGGGGACACAGACAGCAACAGCAACAGCGTC
TCTACTCCTTTGGCTCATCCTCGTCGCACGCATCAATTGGCTTGAGTAGC
AGTAATGACGACAAACGGAAAGGGTCCCTGCCTCCCCTCCCGCATGGCCT
CGATCCCTCCCGTTCCTTCCCACTCTCCTCCTCCTCCCCCTCCTCCTCCT
CCTTTTCCTCCTCAATCTATTTTAGGGATTCCTCTACTTTGGCCACTATC
GCTGCCATCTCTTGCTACCACGGCAGGAGAAGCACTCTTCTATCCCCTAC
TCAACGCCAACTACGTGCGATCTGCGGCTCCCCTCCTTCTTCCTTCTCCT
CCCCTTCCTCTGCAACCCCTCCTCCACCCCCTCCCCCTGACACACCCACC
AAAAAACCCACATGGAAAGATATGTTCAAAAAATACGGGCCTGTCTTCCT
CATCTATTGGAATGGGGTCTGGTTGCTGAGTGGCCTTTCCATCTATGGTG
CACTTGAACTAGGGAATGTAGACCCCCTCCCTCTCGCCCGTGCCATTCAC
CTTGACTCCCTCATTGATCTCGACAAGATTGGACCTGCTCATGGAAACGT
GGCAGTTGCCATCGTTTTGAATGAGGTAGCGGAGCTGGTCCGGTTTCCCT
TTGTCCTGGCTACGGTGCCTAAGGTAAGGAAGAGGGAGGGAAGGTCATAT
CACAGGCTGTCCGTGTGTGTACGTCTCTCGTGCACTCGCGGTGTTCGTCT
AGGTATTCATGCTTCTTATTCGTGCATCTTATTGCTCCTTCTCTTGTTCG
TGACAGGTGACTGCTTGGTGGGATGCACATAAGCCCTCGTACTTTCGCCC
TGCTCCTCGGGCAGATGGCTCCGCCCCTCCCTCCTGGGCGGACCTAGTCA
AGTTGCACGGACCCGTATTTATCGTGTGGTGGGGTTCGTTGTGGGCATTG
GGTGCAGGTGGGTTGTTCCTGGGCTTTGAATATCACTTTTTCGGTGCGGG
CGTGGACGCCATGTCTTTGGCCAGGGAGTGGGGGGTCGATCAGGTGGTGG
ACCTGTCGGGGCTACCCCCTCGTCTGGGCAACGTAGGAGTGGCGGTGGCG
TTCAATGAGGTGTTGGAGGTGGTGCGATTTCCGTTCGCGTTGATGACTGT
CAAGTACTGGACGCGGTGGTGGTATGGTGTCCAAGGAAAGGAAATGCCGA
AATGAAGAATTGACTGAAAGGATGCAAAAGAACTAGTCGAGAACAACGCT
AGAAAATGAAGCTTATGCATCATCAGTGTAGTGCCTACGAACAACCCAAG
CCAGCCATGTACCTTTAATCTAACCTTGTAAACGCTCCAGCTTGTAGGCA
CACTTATTCCGGCGTGCCGCAGCGCTTGAGACAGTCCTCTGTGACAGAGC
TGCACTACATGCGGACGTGTGAGAGTGTATCAACACAGCGACAAGTGCAC
AGCACCATGCCCCTCGATCGTTGTCATACTATTAGGCATTTATGCGGAAC
TAGACAAGGTCGTGGCACATGTATGCTCCCCTTCCATTGTAACCCCCACC
GTGGAGAAGCCTCCTATTGGACATCGGCTTGTGTCAGCCTTAGCCATTCT
ATTTTTCCGGTAGGGACCTGGATCTGGAATCGGACACAGGCAGGGATTGT
GGACCAACCCAGCCTCCAACGCCGTTCTACCACATGTATGTCTCAACCAA
TGGAAATTAAGGGACGCTCGAGCCCGTGCATGCCCACAAGTTGATCTTTC
GAACTGCCGTCGTTCTTTGCCATAATTCTCTTCGAGAGGGAAAAGGAAGA
CACATGTTCATTTGAGATGGAAAGAAAATAGAACCAAAAGGGGGGGACA
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Coding sequence (CDS) from alignment at chr15:835050..837048+

>NO15G03020.1 ID=NO15G03020.1|Name=NO15G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr15:835050..837048+ (Nannochloropsis oceanica)
ATGCGCCGTCTATTGCAGCCGCGGTTTCACTCAGCGGTGGCAAGACTGAT
GATTCCTACTGGCACACGACCTTATCATCACCACCACCACCACCATCCCC
TGGAGCAGCACCAATTTCACCACCACCATCGGGGACACAGACAGCAACAG
CAACAGCGTCTCTACTCCTTTGGCTCATCCTCGTCGCACGCATCAATTGG
CTTGAGTAGCAGTAATGACGACAAACGGAAAGGGTCCCTGCCTCCCCTCC
CGCATGGCCTCGATCCCTCCCGTTCCTTCCCACTCTCCTCCTCCTCCCCC
TCCTCCTCCTCCTTTTCCTCCTCAATCTATTTTAGGGATTCCTCTACTTT
GGCCACTATCGCTGCCATCTCTTGCTACCACGGCAGGAGAAGCACTCTTC
TATCCCCTACTCAACGCCAACTACGTGCGATCTGCGGCTCCCCTCCTTCT
TCCTTCTCCTCCCCTTCCTCTGCAACCCCTCCTCCACCCCCTCCCCCTGA
CACACCCACCAAAAAACCCACATGGAAAGATATGTTCAAAAAATACGGGC
CTGTCTTCCTCATCTATTGGAATGGGGTCTGGTTGCTGAGTGGCCTTTCC
ATCTATGGTGCACTTGAACTAGGGAATGTAGACCCCCTCCCTCTCGCCCG
TGCCATTCACCTTGACTCCCTCATTGATCTCGACAAGATTGGACCTGCTC
ATGGAAACGTGGCAGTTGCCATCGTTTTGAATGAGGTAGCGGAGCTGGTC
CGGTTTCCCTTTGTCCTGGCTACGGTGCCTAAGGTGACTGCTTGGTGGGA
TGCACATAAGCCCTCGTACTTTCGCCCTGCTCCTCGGGCAGATGGCTCCG
CCCCTCCCTCCTGGGCGGACCTAGTCAAGTTGCACGGACCCGTATTTATC
GTGTGGTGGGGTTCGTTGTGGGCATTGGGTGCAGGTGGGTTGTTCCTGGG
CTTTGAATATCACTTTTTCGGTGCGGGCGTGGACGCCATGTCTTTGGCCA
GGGAGTGGGGGGTCGATCAGGTGGTGGACCTGTCGGGGCTACCCCCTCGT
CTGGGCAACGTAGGAGTGGCGGTGGCGTTCAATGAGGTGTTGGAGGTGGT
GCGATTTCCGTTCGCGTTGATGACTGTCAAGTACTGGACGCGGTGGTGGT
ATGGTGTCCAAGGAAAGGAAATGCCGAAATGA
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Synonyms
Publications