NO15G03020, NO15G03020 (gene) Nannochloropsis oceanica

Overview
NameNO15G03020
Unique NameNO15G03020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1999
Alignment locationchr15:835050..837048 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:835050..837048 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO15G03020 vs. NCBI_GenBank
Match: EWM22294.1 (hypothetical protein Naga_100933g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 234.2 bits (596), Expect = 7.000e-58
Identity = 100/133 (75.19%), Postives = 118/133 (88.72%), Query Frame = 0
Query:  261 KVTAWWDAHKPSYFRPAPRADGSAPPSWADLVKLHGPVFIVWWGSLWALGAGGLFLGFEYHFFGAGVDAMSLAREWGVDQVVDLSGLPPRLGNVGVAVAFNEVLEVVRFPFALMTVKYWTRWWYGVQGKEMPK 394
            +VTAWWD HKP+YF+P PRADGS PPSW +LV++HGP F+VWWG+LW LGAGGLFLGFE+H FGA VDA++LAR WGVD+VVDLSG+PP LGN+GVA+A NEVLEVVRFP AL+TVK WTRWWY V+GK MP+
Sbjct:    7 QVTAWWDQHKPAYFKPKPRADGSLPPSWGELVRIHGPPFLVWWGTLWVLGAGGLFLGFEHHLFGADVDALTLARAWGVDKVVDLSGVPPSLGNMGVAIACNEVLEVVRFPLALLTVKPWTRWWYRVRGKTMPE 139          
BLAST of NO15G03020 vs. NCBI_GenBank
Match: EWM22297.1 (hypothetical protein Naga_101653g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 160.2 bits (404), Expect = 1.300e-35
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = 0
Query:  172 KPTWKDMFKKYGPVFLIYWNGVWLLSGLSIYGALELGNVDPLPLARAIHLDSLIDLDKIGPAHGNVAVAIVLNEVAELVRFPFVLATVPK 262
            KPTWK++FKKYGP FL+YWNGVW+LSG++IY ALELG VDPLPLARA+HLD+LIDL+KI P+HGNVAVAI+LNEV E+VRFPFVLATV K
Sbjct:  141 KPTWKELFKKYGPAFLVYWNGVWILSGITIYAALELGGVDPLPLARAVHLDALIDLEKIDPSHGNVAVAILLNEVVEIVRFPFVLATVAK 230          
BLAST of NO15G03020 vs. NCBI_GenBank
Match: GBG30038.1 (Hypothetical Protein FCC1311_062582 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 138.7 bits (348), Expect = 4.000e-29
Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = 0
Query:  178 MFKKYGPVFLIYWNGVWLLSGLSIYGALEL-GNVDPLPLARAIHLDSLIDLDKIGPAHGNVAVAIVLNEVAELVRFPFVLATVPKVTAWWDAHKPSYFRPAPRADGSAPPSWADLVKLHGPVFIVWWGSLWALGAGGLFLGFEYHFFGAGVDAMSLAREWGVDQVVDLSGLPPRLGNVGVAVAFNEVLEVVRFPFALMTV 377
            M +++GPVFL+ W   W LSGL +Y A+EL G    L +A+++ LD L+ L+ + P  GNVA+A+ LNE  E+VRFP V A  P +T   +    +  +         P  ++ L+K HG  F+++W  LWA+   G ++G +     A + A+S     G+D+++ L  + P +GNV +AVA NE +E+VR PF + T+
Sbjct:    1 MMQRHGPVFLVSWGASWALSGLLVYTAIELNGPETALNIAQSVGLDKLVPLNNMDPTLGNVALALALNEALEIVRFPLVAALTPSITKVVEGRFGASMQ-------RKPGRFSTLMKEHGVFFLIYWSGLWAVTGVGCYVGIKTAGPDAALQALSAI---GLDRILPLDSIDPTMGNVALAVAVNEAMEIVRLPFIIATL 190          
BLAST of NO15G03020 vs. NCBI_GenBank
Match: CCI40165.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 84.0 bits (206), Expect = 1.200e-12
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 0
Query:  178 MFKKYGPVFLIYWNGVWLLSGLSIYGALE---LGNVDPLPLARAIHLDSLIDLDKIGPAHGNVAVAIVLNEVAELVRFPFVLATVP 261
            + K+YG  F+ YW G + +SG  IY A+E   L   D + L + I LD  +D++ + P+HGN+A A +LNE+ E +RFPFVLAT P
Sbjct:   53 LIKEYGLPFVAYWTGWYAISGAGIYFAIENGWLAGTDAIQLIQTIGLDRYVDIENLNPSHGNIAFAFLLNEIVETIRFPFVLATFP 138          
BLAST of NO15G03020 vs. NCBI_GenBank
Match: GAY00979.1 (Hypothetical protein PINS_008837 [Pythium insidiosum])

HSP 1 Score: 82.0 bits (201), Expect = 4.400e-12
Identity = 36/95 (37.89%), Postives = 60/95 (63.16%), Query Frame = 0
Query:  171 KKPTWKDMFKKYGPVFLIYWNGVWLLSGLSIYGALELGNV---DPLPLARAIHLDSLIDLDKIGPAHGNVAVAIVLNEVAELVRFPFVLATVPKV 263
            +KP      K+YG  F  +W G++L +G+  Y A + G +   + + +  ++ LD  +D D++ P HGN+A+AI++NE+ E +RFPF LAT+P V
Sbjct:   77 QKPGLMGTIKEYGMPFFFWWTGLYLATGVGFYAAFDSGLLNGGEVIDVVMSLGLDRFVDADRLNPTHGNLALAIIVNEIVEPIRFPFALATIPHV 171          
BLAST of NO15G03020 vs. NCBI_GenBank
Match: OQS00267.1 (hypothetical protein THRCLA_06079 [Thraustotheca clavata])

HSP 1 Score: 81.6 bits (200), Expect = 5.800e-12
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 0
Query:  178 MFKKYGPVFLIYWNGVWLLSGLSIYGALE---LGNVDPLPLARAIHLDSLIDLDKIGPAHGNVAVAIVLNEVAELVRFPFVLATVPKVTAWW 267
            M +  G  FL++W  ++  SG +IY  L     G  D + L R + LDS IDLD + P +GN+A+A+VLNE+ E VRFPF LAT P +   W
Sbjct:   76 MIQANGLPFLVWWTTLYGASGFTIYYGLSRGWFGGSDAVDLIRGLGLDSYIDLDSLNPEYGNIAIAVVLNEILETVRFPFCLATTPMIKRAW 167          
BLAST of NO15G03020 vs. NCBI_GenBank
Match: OEU07490.1 (hypothetical protein FRACYDRAFT_250908 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 80.5 bits (197), Expect = 1.300e-11
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 0
Query:  179 FKKYGPVFLIYWNGVWLLSGLSIYGALELGNVDPL-PLARAIHLDSLIDLDKIGPAHGNVAVAIVLNEVAELVRFPFVLATVPKVTAWW 267
            FK+ G  FL +W GVW+++G+ IY  +EL  +D L  L   +  ++ ID  K+ P  GNV  A+ +NE+ E +RFPFVL T   +  WW
Sbjct:   60 FKQLGMPFLAWWTGVWVVTGVGIYSGMELFGIDVLGMLQTTLPSNNYIDFSKVDPKTGNVMTAVAINELIEPIRFPFVLLTAKPIIKWW 148          
BLAST of NO15G03020 vs. NCBI_GenBank
Match: XP_008621151.1 (hypothetical protein SDRG_16711 [Saprolegnia diclina VS20] >EQC25423.1 hypothetical protein SDRG_16711 [Saprolegnia diclina VS20])

HSP 1 Score: 79.7 bits (195), Expect = 2.200e-11
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:  183 GPVFLIYWNGVWLLSGLSIYGALE---LGNVDPLPLARAIHLDSLIDLDKIGPAHGNVAVAIVLNEVAELVRFPFVLATVPKVTAWW 267
            G  FL++W  ++  +G +IY  L     G  D + L R + LDS IDLD + P +GN+A+A+VLNE+ E VRFPF LAT P +   W
Sbjct:   83 GLPFLVWWTTLYGATGFTIYYGLSRGWFGGSDAVDLIRGLGLDSYIDLDSLNPEYGNIAIAVVLNEILETVRFPFCLATTPMIKRAW 169          
BLAST of NO15G03020 vs. NCBI_GenBank
Match: XP_008605211.1 (hypothetical protein SDRG_01464 [Saprolegnia diclina VS20] >EQC41497.1 hypothetical protein SDRG_01464 [Saprolegnia diclina VS20])

HSP 1 Score: 79.7 bits (195), Expect = 2.200e-11
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:  183 GPVFLIYWNGVWLLSGLSIYGALE---LGNVDPLPLARAIHLDSLIDLDKIGPAHGNVAVAIVLNEVAELVRFPFVLATVPKVTAWW 267
            G  FL++W  ++  +G +IY  L     G  D + L R + LDS IDLD + P +GN+A+A+VLNE+ E VRFPF LAT P +   W
Sbjct:   68 GLPFLVWWTTLYGATGFTIYYGLSRGWFGGSDAVDLIRGLGLDSYIDLDSLNPEYGNIAIAVVLNEILETVRFPFCLATTPMIKRAW 154          
BLAST of NO15G03020 vs. NCBI_GenBank
Match: XP_012194438.1 (hypothetical protein SPRG_00832 [Saprolegnia parasitica CBS 223.65] >KDO34771.1 hypothetical protein SPRG_00832 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 79.7 bits (195), Expect = 2.200e-11
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:  183 GPVFLIYWNGVWLLSGLSIYGALE---LGNVDPLPLARAIHLDSLIDLDKIGPAHGNVAVAIVLNEVAELVRFPFVLATVPKVTAWW 267
            G  FL++W  ++  +G +IY  L     G  D + L R + LDS IDLD + P +GN+A+A+VLNE+ E VRFPF LAT P +   W
Sbjct:   83 GLPFLVWWTTLYGATGFTIYYGLSRGWFGGSDAVDLIRGLGLDSYIDLDSLNPEYGNIAIAVVLNEILETVRFPFCLATTPMIKRAW 169          
The following BLAST results are available for this feature:
BLAST of NO15G03020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22294.17.000e-5875.19hypothetical protein Naga_100933g1, partial [Nanno... [more]
EWM22297.11.300e-3580.00hypothetical protein Naga_101653g2, partial [Nanno... [more]
GBG30038.14.000e-2937.00Hypothetical Protein FCC1311_062582 [Aurantiochytr... [more]
CCI40165.11.200e-1245.35unnamed protein product [Albugo candida][more]
GAY00979.14.400e-1237.89Hypothetical protein PINS_008837 [Pythium insidios... [more]
OQS00267.15.800e-1244.57hypothetical protein THRCLA_06079 [Thraustotheca c... [more]
OEU07490.11.300e-1141.57hypothetical protein FRACYDRAFT_250908 [Fragilario... [more]
XP_008621151.12.200e-1144.83hypothetical protein SDRG_16711 [Saprolegnia dicli... [more]
XP_008605211.12.200e-1144.83hypothetical protein SDRG_01464 [Saprolegnia dicli... [more]
XP_012194438.12.200e-1144.83hypothetical protein SPRG_00832 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL146nonsL146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001275NSK001275Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G03020.1NO15G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588165gene_4866Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101653g2gene8144Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G03020.1NO15G03020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G03020 ID=NO15G03020|Name=NO15G03020|organism=Nannochloropsis oceanica|type=gene|length=1999bp
ATACACACAGCCTGACAGTGCCGCACCGCGTGCCGCGAGGATGCGCCGTC
TATTGCAGCCGCGGTTTCACTCAGCGGTGGCAAGACTGATGATTCCTACT
GGCACACGACCTTATCATCACCACCACCACCACCATCCCCTGGAGCAGCA
CCAATTTCACCACCACCATCGGGGACACAGACAGCAACAGCAACAGCGTC
TCTACTCCTTTGGCTCATCCTCGTCGCACGCATCAATTGGCTTGAGTAGC
AGTAATGACGACAAACGGAAAGGGTCCCTGCCTCCCCTCCCGCATGGCCT
CGATCCCTCCCGTTCCTTCCCACTCTCCTCCTCCTCCCCCTCCTCCTCCT
CCTTTTCCTCCTCAATCTATTTTAGGGATTCCTCTACTTTGGCCACTATC
GCTGCCATCTCTTGCTACCACGGCAGGAGAAGCACTCTTCTATCCCCTAC
TCAACGCCAACTACGTGCGATCTGCGGCTCCCCTCCTTCTTCCTTCTCCT
CCCCTTCCTCTGCAACCCCTCCTCCACCCCCTCCCCCTGACACACCCACC
AAAAAACCCACATGGAAAGATATGTTCAAAAAATACGGGCCTGTCTTCCT
CATCTATTGGAATGGGGTCTGGTTGCTGAGTGGCCTTTCCATCTATGGTG
CACTTGAACTAGGGAATGTAGACCCCCTCCCTCTCGCCCGTGCCATTCAC
CTTGACTCCCTCATTGATCTCGACAAGATTGGACCTGCTCATGGAAACGT
GGCAGTTGCCATCGTTTTGAATGAGGTAGCGGAGCTGGTCCGGTTTCCCT
TTGTCCTGGCTACGGTGCCTAAGgtaaggaagagggagggaaggtcatat
cacaggctgtccgtgtgtgtacgtctctcgtgcactcgcggtgttcgtct
aggtattcatgcttcttattcgtgcatcttattgctccttctcttgttcg
tgacagGTGACTGCTTGGTGGGATGCACATAAGCCCTCGTACTTTCGCCC
TGCTCCTCGGGCAGATGGCTCCGCCCCTCCCTCCTGGGCGGACCTAGTCA
AGTTGCACGGACCCGTATTTATCGTGTGGTGGGGTTCGTTGTGGGCATTG
GGTGCAGGTGGGTTGTTCCTGGGCTTTGAATATCACTTTTTCGGTGCGGG
CGTGGACGCCATGTCTTTGGCCAGGGAGTGGGGGGTCGATCAGGTGGTGG
ACCTGTCGGGGCTACCCCCTCGTCTGGGCAACGTAGGAGTGGCGGTGGCG
TTCAATGAGGTGTTGGAGGTGGTGCGATTTCCGTTCGCGTTGATGACTGT
CAAGTACTGGACGCGGTGGTGGTATGGTGTCCAAGGAAAGGAAATGCCGA
AATGAAGAATTGACTGAAAGGATGCAAAAGAACTAGTCGAGAACAACGCT
AGAAAATGAAGCTTATGCATCATCAGTGTAGTGCCTACGAACAACCCAAG
CCAGCCATGTACCTTTAATCTAACCTTGTAAACGCTCCAGCTTGTAGGCA
CACTTATTCCGGCGTGCCGCAGCGCTTGAGACAGTCCTCTGTGACAGAGC
TGCACTACATGCGGACGTGTGAGAGTGTATCAACACAGCGACAAGTGCAC
AGCACCATGCCCCTCGATCGTTGTCATACTATTAGGCATTTATGCGGAAC
TAGACAAGGTCGTGGCACATGTATGCTCCCCTTCCATTGTAACCCCCACC
GTGGAGAAGCCTCCTATTGGACATCGGCTTGTGTCAGCCTTAGCCATTCT
ATTTTTCCGGTAGGGACCTGGATCTGGAATCGGACACAGGCAGGGATTGT
GGACCAACCCAGCCTCCAACGCCGTTCTACCACATGTATGTCTCAACCAA
TGGAAATTAAGGGACGCTCGAGCCCGTGCATGCCCACAAGTTGATCTTTC
GAACTGCCGTCGTTCTTTGCCATAATTCTCTTCGAGAGGGAAAAGGAAGA
CACATGTTCATTTGAGATGGAAAGAAAATAGAACCAAAAGGGGGGGACA
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protein sequence of NO15G03020.1

>NO15G03020.1-protein ID=NO15G03020.1-protein|Name=NO15G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MRRLLQPRFHSAVARLMIPTGTRPYHHHHHHHPLEQHQFHHHHRGHRQQQ
QQRLYSFGSSSSHASIGLSSSNDDKRKGSLPPLPHGLDPSRSFPLSSSSP
SSSSFSSSIYFRDSSTLATIAAISCYHGRRSTLLSPTQRQLRAICGSPPS
SFSSPSSATPPPPPPPDTPTKKPTWKDMFKKYGPVFLIYWNGVWLLSGLS
IYGALELGNVDPLPLARAIHLDSLIDLDKIGPAHGNVAVAIVLNEVAELV
RFPFVLATVPKVTAWWDAHKPSYFRPAPRADGSAPPSWADLVKLHGPVFI
VWWGSLWALGAGGLFLGFEYHFFGAGVDAMSLAREWGVDQVVDLSGLPPR
LGNVGVAVAFNEVLEVVRFPFALMTVKYWTRWWYGVQGKEMPK*
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Synonyms
Publications