NO15G02930, NO15G02930 (gene) Nannochloropsis oceanica

Overview
NameNO15G02930
Unique NameNO15G02930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length793
Alignment locationchr15:799171..799963 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:799171..799963 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G02930 vs. NCBI_GenBank
Match: EWM22311.1 (hypothetical protein Naga_101969g1 [Nannochloropsis gaditana])

HSP 1 Score: 65.1 bits (157), Expect = 3.300e-7
Identity = 46/92 (50.00%), Postives = 55/92 (59.78%), Query Frame = 0 
Query:    4 HREASSRRRGREGGGRGEHSGLLKRFPPLLFAVERVEGAMAKLRAVAVAASALLGPDWVLPTKGRIGGRKGREKGWREVEVEKRRLRGLVGA 96
            H E   R  GR GGGRG+  G LKR PP L A+E+V+GA+  L       S  LGPDW+LPT    GG K R    RE+  E++RLRGLV A
Sbjct:  108 HSERQKRVGGR-GGGRGQ-VGWLKRCPPSLCALEKVQGAIRTLGLTVGDISVFLGPDWILPT----GGLKERR---REINKERQRLRGLVVA 190
The following BLAST results are available for this feature:
BLAST of NO15G02930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22311.13.300e-750.00hypothetical protein Naga_101969g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL146nonsL146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02930.1NO15G02930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588120gene_4855Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101969g1gene8129Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02930.1NO15G02930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02930 ID=NO15G02930|Name=NO15G02930|organism=Nannochloropsis oceanica|type=gene|length=793bp
ATGGGTCGGCACAGAGAGGCGTCATCGAGGAGGAGGGGGAGGGAGGGGGG
GGGAAGGGGGGAGCACTCGGGGTTGTTGAAACGGTTTCCACCCTTGTTGT
TCGCGGTGGAGAGGGTGGAGGGAGCGATGGCGAAGCTAAGGGCGGTAGCC
GTTGCAGCATCAGCTCTCTTGGGGCCTGATTGGGTGTTGCCCACGAAAGG
GAGGATCGGAGGGAGGAAGGGGAGGGAGAAGGGCTGGAGGGAGGTCGAGG
TGGAGAAGAGGCGCTTGAGAGGGTTGGTGGGCGCGGTGATGAGGAGGCAG
GAGGAGGAGAAGAGGGAGGAGGAGAGGGAAGCAGCTGCAGCGGTGGCAAG
GCAACGGACGCGCTTGACGTCGTTTTGGGAGAAGGATAATGAGGAGGAGG
ACGAAGAGGACGAAGAGGTAATGTACCGGACAATGGGAGGAGGGAGGGGA
GGGGGAGAAGGAGGAAGAGGAGGCTGCGAAGTCGAAATGCGATCGTGGAT
AAGTGGCTGGTGGATGAGGAGGGGGATGACGCGTATGCGGACTTGGAGGA
TTTTATCATGCCTGATGAGTACACGTGAGGACGTTCGTTGTCGTGGTGGG
TGGTTATGTCGGGATGGTGGTATAAGAGTGGAAATAGCGATGAATGTGAA
GGGGGAAGGGGGGGAGGAGGCGGTTGAGGATGAAGATGATAATGAGATGT
AATAATTTGATTCAAAGCGATATTCAAAAAGTACCTGACACACAACCAGT
AAGACATACGGAAAAGAAAAGATATGAAGATGCTTGTCGGTAA
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protein sequence of NO15G02930.1

>NO15G02930.1-protein ID=NO15G02930.1-protein|Name=NO15G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MGRHREASSRRRGREGGGRGEHSGLLKRFPPLLFAVERVEGAMAKLRAVA
VAASALLGPDWVLPTKGRIGGRKGREKGWREVEVEKRRLRGLVGAVMRRQ
EEEKREEEREAAAAVARQRTRLTSFWEKDNEEEDEEDEEVMYRTMGGGRG
GGEGGRGGCEVEMRSWISGWWMRRGMTRMRTWRILSCLMSTREDVRCRGG
WLCRDGGIRVEIAMNVKGEGGEEAVEDEDDNEM*
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Synonyms
Publications