NO15G01920.1, NO15G01920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01920.1
Unique NameNO15G01920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2014
Alignment locationchr15:537257..539889 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:537257..539889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01920.1 vs.
Match: EWM22398.1 (hypothetical protein Naga_100067g14 [Nannochloropsis gaditana])

HSP 1 Score: 310.8 bits (795), Expect = 6.500e-81
Identity = 259/456 (56.80%), Postives = 286/456 (62.72%), Query Frame = 0 
Query:    2 FKCLLLLALLGVACAFMGHVPST-----RSRGRIMASLADLEAKLASKPLSAKGPMPMAPTPVKQSGFS---------------------LFQSKSTTPAPTATKSAVVAKTTKPTAVKVTKEMAKALSAPAAVVTKAKSVSAVEPSAPVVPAATGAGADFGTAGVLGGALLATVAGASAVSNALTGKAKAIADAEKKKAIEEAARKEYVIRQQRARKPLAPGPSDAFRLAASVGLILASTGAIGAFVLLPKPEEPAPIVKDIKKTSPKPAAAPAAAPASIAKPAPVAPAAPAAPAAPAAPAAPAAPAAPAAKDPEPVAAPVAPSAKEVEPVKATTPVVEASKPIAVTKPAAPTPATSAPAAPVAEAPKPAPVAPSPEGAPAVEAVKANPPPPPPPASKVMEKSKAAAPAVKAPATPVPDFSSVPGDAPSARTLAPDTSVDPEFLKSLKGSKKGKK 432
            FK LL L +LGVA AFMG VP +     RSRGRIMASLADL+AK  SKP  A  P P   TPV+QSGFS                          +T+PAP ATK  V AK  K  AVKVTK+MAK L+ PAAV TK KS +AVEP+ P  PA   +G D GTAGV+GGALLAT+AGA AV+NALTGKA+AIA AEKKKAIEEAAR E+ +RQQRARKPLAPGPSDA RLA + GLILASTGA+GAFVLLPKPEEP PIVK++KKT P         P   A PAP   A   +P APA     A    PA   P P  +  APSA E  P     PV EA KP       APTPA     APVAEAPKPAP AP+P  AP  E     P P   P      K KAA P     A+P   +SSV GDAPSARTL  D +VDPEFLKSLKGSKKGKK
Sbjct:    4 FKILLTLGILGVAVAFMGQVPPSPVRCSRSRGRIMASLADLQAKALSKPADATKPAPTISTPVEQSGFSLFGKPTSPAPPALKNTVVAKPAVAKATTSPAPAATKGTVAAKPAKTAAVKVTKDMAKVLT-PAAVTTKVKSATAVEPATP--PAVAPSGGDLGTAGVVGGALLATIAGAGAVTNALTGKARAIAAAEKKKAIEEAARAEF-LRQQRARKPLAPGPSDAVRLALAGGLILASTGALGAFVLLPKPEEPVPIVKELKKTPP--------VPPKDAAPAPKVEAPKPSPPAPAPEPIKAEVPKPAPPSPAPEVSKPAPSAPEAPPA----PVAEAPKPAP-----APTPAP----APVAEAPKPAP-APTPAPAPVPEPKAEAPKPVETP------KPKAADPKPAPAASPA--YSSVAGDAPSARTLPADNAVDPEFLKSLKGSKKGKK 425
The following BLAST results are available for this feature:
BLAST of NO15G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22398.16.500e-8156.80hypothetical protein Naga_100067g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01920NO15G01920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01920.1NO15G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01920.1.cds1NO15G01920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01920.1.cds2NO15G01920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01920.1 ID=NO15G01920.1|Name=NO15G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2014bp
ACTTGCGCAGAAGTTGCGTGGTTCGGACCCACCACGCGGGATTCCAAAGA
GGACAACGCAGAGCCCTCGTGTGATAAAAGCCTGCAGGAGCGTCTCCTAT
TCTTTTTTTCAAGAGCGCTCTGTTTTAAATGTCGTAGCTAACGGGTGGTG
GTGGCGTATCCTCCTCCCTTGAACCCGCGACCCAGCAAATCCAAGCCCCG
ATCTTGATTGATCCTTCTCCCTTTCGCTTTCGGTGCCCACTTTGTTCTTG
CTCTGGTCCGTATTGCTTCCTCTCCCCGTACAATGTGCTGATTTGATGCC
TTGGCCCCCATACCCGCGACAGGACAATGTTCAAGTGTCTTCTACTCTTG
GCTCTCTTGGGCGTGGCCTGCGCCTTCATGGGCCATGTACCCAGCACCAG
AAGCCGTGGCCGCATCATGGCCAGCCTAGCCGACCTCGAGGCCAAGCTTG
CGAGCAAGCCCCTGAGCGCCAAGGGACCTATGCCCATGGCTCCCACCCCC
GTCAAACAATCTGGTTTCTCCTTGTTTCAGAGCAAGTCGACCACCCCCGC
ACCGACCGCGACGAAGAGCGCGGTCGTGGCCAAGACGACGAAGCCCACTG
CCGTCAAGGTTACTAAGGAGATGGCCAAGGCCCTGAGTGCCCCCGCCGCT
GTTGTCACGAAGGCCAAGTCTGTCTCGGCTGTGGAGCCCAGCGCGCCTGT
CGTCCCCGCCGCCACCGGTGCTGGTGCCGACTTTGGTACGGCCGGTGTCT
TGGGTGGTGCTCTCCTCGCTACTGTCGCTGGTGCCAGCGCCGTCAGCAAT
GCCCTGACGGGCAAGGCAAAGGCTATTGCCGATGCTGAGAAAAAGAAGGC
CATTGAGGAGGCGGCGCGCAAGGAATACGTCATTCGCCAGCAACGTGCTC
GTAAGCCTCTGGCCCCGGGTCCTTCTGACGCTTTTCGCCTCGCTGCCTCC
GTGGGATTGATTCTCGCCTCCACTGGTGCGATTGGCGCCTTCGTCCTGCT
CCCCAAGCCCGAAGAACCTGCACCCATCGTCAAGGACATCAAGAAGACAT
CACCCAAGCCTGCTGCTGCACCTGCTGCTGCCCCTGCTTCTATTGCCAAG
CCCGCACCTGTCGCACCTGCTGCACCTGCCGCGCCTGCCGCACCTGCCGC
ACCTGCCGCGCCTGCCGCACCTGCCGCGCCTGCCGCTAAGGATCCTGAGC
CCGTCGCTGCTCCCGTGGCACCCTCGGCTAAGGAGGTCGAGCCCGTCAAA
GCCACGACCCCGGTCGTCGAGGCATCCAAGCCGATTGCAGTCACCAAGCC
TGCTGCTCCCACGCCCGCCACCTCTGCCCCCGCAGCGCCTGTTGCTGAGG
CCCCCAAACCTGCTCCTGTTGCTCCTTCCCCCGAAGGTGCCCCGGCTGTC
GAGGCCGTCAAGGCCAACCCTCCTCCTCCTCCTCCTCCTGCTTCCAAGGT
GATGGAAAAGTCCAAGGCTGCTGCTCCTGCTGTAAAAGCACCTGCTACGC
CTGTACCTGACTTCTCGTCGGTGCCGGGAGATGCCCCCTCAGCACGGACG
TTGGCGCCTGACACATCTGTGGACCCTGAATTCTTGAAGAGTCTGAAGGG
CTCAAAAAAGGGGAAGAAGTAAGATGCGGAGAGAATGAAGAAGGGAATCA
CGGAAGGGGGGATGCAGAAACTTTGAGGGAAAAGGATCGTATTGAGTTTT
CCGGTGGTATGTCTATGTACGTGTGTGTGTTAGATGGTGCTGTTCAATCG
ATGTATCCACCTTTGTATTTTTGTGTCCTTACTCTCCCCGACATTAAGGG
TCAGGCGAGGGGGGGAGAAGGGGGGTCATTTTGGTTTGTGTGGGAATGTA
GGTGTGGGTGTGAAGTCATGACTTGAAGTAAACCAACCGACAAAAAAAAC
ACTCTGTCCGTTTGTCCCTTGGTTTCGTCTGCTCTCGCCGGGAGCAGAAA
AGAAGACGGCGACCAAGGAAGAAAGGGAAAAAGGAGAAAACATCAGGACA
TGAACATCGTACGA
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protein sequence of NO15G01920.1

>NO15G01920.1-protein ID=NO15G01920.1-protein|Name=NO15G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MFKCLLLLALLGVACAFMGHVPSTRSRGRIMASLADLEAKLASKPLSAKG
PMPMAPTPVKQSGFSLFQSKSTTPAPTATKSAVVAKTTKPTAVKVTKEMA
KALSAPAAVVTKAKSVSAVEPSAPVVPAATGAGADFGTAGVLGGALLATV
AGASAVSNALTGKAKAIADAEKKKAIEEAARKEYVIRQQRARKPLAPGPS
DAFRLAASVGLILASTGAIGAFVLLPKPEEPAPIVKDIKKTSPKPAAAPA
AAPASIAKPAPVAPAAPAAPAAPAAPAAPAAPAAPAAKDPEPVAAPVAPS
AKEVEPVKATTPVVEASKPIAVTKPAAPTPATSAPAAPVAEAPKPAPVAP
SPEGAPAVEAVKANPPPPPPPASKVMEKSKAAAPAVKAPATPVPDFSSVP
GDAPSARTLAPDTSVDPEFLKSLKGSKKGKK*
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mRNA from alignment at chr15:537257..539889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01920.1 ID=NO15G01920.1|Name=NO15G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2633bp|location=Sequence derived from alignment at chr15:537257..539889- (Nannochloropsis oceanica)
ACTTGCGCAGAAGTTGCGTGGTTCGGACCCACCACGCGGGATTCCAAAGA
GGACAACGCAGAGCCCTCGTGTGATAAAAGCCTGCAGGAGCGTCTCCTAT
TCTTTTTTTCAAGAGCGCTCTGTTTTAAATGTCGTAGCTAACGGGTGGTG
GTGGCGTATCCTCCTCCCTTGAACCCGCGACCCAGCAAATCCAAGCCCCG
ATCTTGATTGATCCTTCTCCCTTTCGCTTTCGGTGCCCACTTTGTTCTTG
CTCTGGTCCGTATTGCTTCCTCTCCCCGTACAATGTGCTGATTTGATGCC
TTGGCCCCCATACCCGCGACAGGACAATGTTCAAGTGTCTTCTACTCTTG
GCTCTCTTGGGCGTGGCCTGCGCCTTCATGGGCCATGTACCCAGCACCAG
AAGCCGTGGCCGCATCATGGCCAGCCTAGCCGACCTCGAGGCCAAGCTTG
CGAGCAAGCCCCTGAGCGCCAAGGGACCTATGCCCATGGCTCCCACCCCC
GTCAAACAATCTGGTTTCTCCTTGTTTCAGAGCAAGTCGACCACCCCCGC
ACCGACCGCGACGAAGAGCGCGGTCGTGGCCAAGACGACGAAGCCCACTG
CCGTCAAGGTTACTAAGGAGATGGCCAAGGCCCTGAGTGCCCCCGCCGCT
GTTGTCACGAAGGCCAAGTCTGGTACGTCTGTGTGTTTCATTAGCTGAGA
TAATGTAGCTCTCCGTCATATTTTTTATTGCCAGATTGGAGTCTGGGTCG
GGGGAGTGTCTTTGTGTAGGTTTCCGTTTGTCTGTCTGTCTGTCAGCCTG
TCTGTTTGCACACAGGTCTGAGTTATCTGTCTTTATCCTTTTGTGACAAT
TTGTATGTTTTCTCTGTGTCTTTGTCTCTGTCTATGGGAAGGCGCGCTTG
ACGCCGCGCAAGGTCCCCCTTGATGAACTGCGAAACCTAGCGCAGGGGAT
TCGATCGAGGGCTGCCTCCTCTCTTTTCTACTCTTCATGTAACTCACATC
CTCCTTTTGGTATGCTCACCTACCGCTGGTATGGCTGCTCTTGTCTTCTG
TCTTTTAATATGAAGCGAGGCAGATAAACTTAGTGAATGGCTTTATCATC
GGGGTGTGGGTCCTTGGAGAGGAGGGAAGAAATGGCAGCAATCATGAAAC
TAACACTTAGCATGCAAATAAAACGAATCTGAAGGGGACCTTATTAATCC
ACTGACAAGTACCAGAAAAATGAAATGAATAAAAAAAAATGAAAAGAATA
TGATATGGACTCCTTCCTCTCATCCATCCTACACTCGACAGTCTCGGCTG
TGGAGCCCAGCGCGCCTGTCGTCCCCGCCGCCACCGGTGCTGGTGCCGAC
TTTGGTACGGCCGGTGTCTTGGGTGGTGCTCTCCTCGCTACTGTCGCTGG
TGCCAGCGCCGTCAGCAATGCCCTGACGGGCAAGGCAAAGGCTATTGCCG
ATGCTGAGAAAAAGAAGGCCATTGAGGAGGCGGCGCGCAAGGAATACGTC
ATTCGCCAGCAACGTGCTCGTAAGCCTCTGGCCCCGGGTCCTTCTGACGC
TTTTCGCCTCGCTGCCTCCGTGGGATTGATTCTCGCCTCCACTGGTGCGA
TTGGCGCCTTCGTCCTGCTCCCCAAGCCCGAAGAACCTGCACCCATCGTC
AAGGACATCAAGAAGACATCACCCAAGCCTGCTGCTGCACCTGCTGCTGC
CCCTGCTTCTATTGCCAAGCCCGCACCTGTCGCACCTGCTGCACCTGCCG
CGCCTGCCGCACCTGCCGCACCTGCCGCGCCTGCCGCACCTGCCGCGCCT
GCCGCTAAGGATCCTGAGCCCGTCGCTGCTCCCGTGGCACCCTCGGCTAA
GGAGGTCGAGCCCGTCAAAGCCACGACCCCGGTCGTCGAGGCATCCAAGC
CGATTGCAGTCACCAAGCCTGCTGCTCCCACGCCCGCCACCTCTGCCCCC
GCAGCGCCTGTTGCTGAGGCCCCCAAACCTGCTCCTGTTGCTCCTTCCCC
CGAAGGTGCCCCGGCTGTCGAGGCCGTCAAGGCCAACCCTCCTCCTCCTC
CTCCTCCTGCTTCCAAGGTGATGGAAAAGTCCAAGGCTGCTGCTCCTGCT
GTAAAAGCACCTGCTACGCCTGTACCTGACTTCTCGTCGGTGCCGGGAGA
TGCCCCCTCAGCACGGACGTTGGCGCCTGACACATCTGTGGACCCTGAAT
TCTTGAAGAGTCTGAAGGGCTCAAAAAAGGGGAAGAAGTAAGATGCGGAG
AGAATGAAGAAGGGAATCACGGAAGGGGGGATGCAGAAACTTTGAGGGAA
AAGGATCGTATTGAGTTTTCCGGTGGTATGTCTATGTACGTGTGTGTGTT
AGATGGTGCTGTTCAATCGATGTATCCACCTTTGTATTTTTGTGTCCTTA
CTCTCCCCGACATTAAGGGTCAGGCGAGGGGGGGAGAAGGGGGGTCATTT
TGGTTTGTGTGGGAATGTAGGTGTGGGTGTGAAGTCATGACTTGAAGTAA
ACCAACCGACAAAAAAAACACTCTGTCCGTTTGTCCCTTGGTTTCGTCTG
CTCTCGCCGGGAGCAGAAAAGAAGACGGCGACCAAGGAAGAAAGGGAAAA
AGGAGAAAACATCAGGACATGAACATCGTACGA
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Coding sequence (CDS) from alignment at chr15:537257..539889-

>NO15G01920.1 ID=NO15G01920.1|Name=NO15G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr15:537257..539889- (Nannochloropsis oceanica)
ATGTTCAAGTGTCTTCTACTCTTGGCTCTCTTGGGCGTGGCCTGCGCCTT
CATGGGCCATGTACCCAGCACCAGAAGCCGTGGCCGCATCATGGCCAGCC
TAGCCGACCTCGAGGCCAAGCTTGCGAGCAAGCCCCTGAGCGCCAAGGGA
CCTATGCCCATGGCTCCCACCCCCGTCAAACAATCTGGTTTCTCCTTGTT
TCAGAGCAAGTCGACCACCCCCGCACCGACCGCGACGAAGAGCGCGGTCG
TGGCCAAGACGACGAAGCCCACTGCCGTCAAGGTTACTAAGGAGATGGCC
AAGGCCCTGAGTGCCCCCGCCGCTGTTGTCACGAAGGCCAAGTCTGTCTC
GGCTGTGGAGCCCAGCGCGCCTGTCGTCCCCGCCGCCACCGGTGCTGGTG
CCGACTTTGGTACGGCCGGTGTCTTGGGTGGTGCTCTCCTCGCTACTGTC
GCTGGTGCCAGCGCCGTCAGCAATGCCCTGACGGGCAAGGCAAAGGCTAT
TGCCGATGCTGAGAAAAAGAAGGCCATTGAGGAGGCGGCGCGCAAGGAAT
ACGTCATTCGCCAGCAACGTGCTCGTAAGCCTCTGGCCCCGGGTCCTTCT
GACGCTTTTCGCCTCGCTGCCTCCGTGGGATTGATTCTCGCCTCCACTGG
TGCGATTGGCGCCTTCGTCCTGCTCCCCAAGCCCGAAGAACCTGCACCCA
TCGTCAAGGACATCAAGAAGACATCACCCAAGCCTGCTGCTGCACCTGCT
GCTGCCCCTGCTTCTATTGCCAAGCCCGCACCTGTCGCACCTGCTGCACC
TGCCGCGCCTGCCGCACCTGCCGCACCTGCCGCGCCTGCCGCACCTGCCG
CGCCTGCCGCTAAGGATCCTGAGCCCGTCGCTGCTCCCGTGGCACCCTCG
GCTAAGGAGGTCGAGCCCGTCAAAGCCACGACCCCGGTCGTCGAGGCATC
CAAGCCGATTGCAGTCACCAAGCCTGCTGCTCCCACGCCCGCCACCTCTG
CCCCCGCAGCGCCTGTTGCTGAGGCCCCCAAACCTGCTCCTGTTGCTCCT
TCCCCCGAAGGTGCCCCGGCTGTCGAGGCCGTCAAGGCCAACCCTCCTCC
TCCTCCTCCTCCTGCTTCCAAGGTGATGGAAAAGTCCAAGGCTGCTGCTC
CTGCTGTAAAAGCACCTGCTACGCCTGTACCTGACTTCTCGTCGGTGCCG
GGAGATGCCCCCTCAGCACGGACGTTGGCGCCTGACACATCTGTGGACCC
TGAATTCTTGAAGAGTCTGAAGGGCTCAAAAAAGGGGAAGAAGTAA
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Synonyms
Publications