NO15G01920, NO15G01920 (gene) Nannochloropsis oceanica

Overview
NameNO15G01920
Unique NameNO15G01920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2633
Alignment locationchr15:537257..539889 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:537257..539889 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G01920 vs. NCBI_GenBank
Match: EWM22398.1 (hypothetical protein Naga_100067g14 [Nannochloropsis gaditana])

HSP 1 Score: 162.9 bits (411), Expect = 2.200e-36
Identity = 158/267 (59.18%), Postives = 170/267 (63.67%), Query Frame = 0 
Query:    2 FKCLLLLALLGVACAFMGHVP-----STRSRGRIMASLADLEAKLASKPLSAKGPMPMAPTPVKQSGFSLF------------------QSKSTTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGTAGVLGGALLATVAGASAVSNALTGXXXXXXXXXXXXXXXXXXXXXXVIRQQRARKPLAPGPSDAFRLAASVGLILASTGAIGAFVLLPKPEEPAPIVKDIKKTSPKP 246
            FK LL L +LGVA AFMG VP      +RSRGRIMASLADL+AK  SKP  A  P P   TPV+QSGFSLF                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    D GTAGV+GGALLAT+AGA AV+NALTG                       +RQQRARKPLAPGPSDA RLA + GLILASTGA+GAFVLLPKPEEP PIVK++KKT P P
Sbjct:    4 FKILLTLGILGVAVAFMGQVPPSPVRCSRSRGRIMASLADLQAKALSKPADATKPAPTISTPVEQSGFSLFGKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKSATAVEPATPPAVAPSGGDLGTAGVVGGALLATIAGAGAVTNALTG-KARAIAAAEKKKAIEEAARAEFLRQQRARKPLAPGPSDAVRLALAGGLILASTGALGAFVLLPKPEEPVPIVKELKKTPPVP 269
The following BLAST results are available for this feature:
BLAST of NO15G01920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22398.12.200e-3659.18hypothetical protein Naga_100067g14 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL142nonsL142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001406NSK001406Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01920.1NO15G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100067g14gene8037Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01920.1NO15G01920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01920 ID=NO15G01920|Name=NO15G01920|organism=Nannochloropsis oceanica|type=gene|length=2633bp
ACTTGCGCAGAAGTTGCGTGGTTCGGACCCACCACGCGGGATTCCAAAGA
GGACAACGCAGAGCCCTCGTGTGATAAAAGCCTGCAGGAGCGTCTCCTAT
TCTTTTTTTCAAGAGCGCTCTGTTTTAAATGTCGTAGCTAACGGGTGGTG
GTGGCGTATCCTCCTCCCTTGAACCCGCGACCCAGCAAATCCAAGCCCCG
ATCTTGATTGATCCTTCTCCCTTTCGCTTTCGGTGCCCACTTTGTTCTTG
CTCTGGTCCGTATTGCTTCCTCTCCCCGTACAATGTGCTGATTTGATGCC
TTGGCCCCCATACCCGCGACAGGACAATGTTCAAGTGTCTTCTACTCTTG
GCTCTCTTGGGCGTGGCCTGCGCCTTCATGGGCCATGTACCCAGCACCAG
AAGCCGTGGCCGCATCATGGCCAGCCTAGCCGACCTCGAGGCCAAGCTTG
CGAGCAAGCCCCTGAGCGCCAAGGGACCTATGCCCATGGCTCCCACCCCC
GTCAAACAATCTGGTTTCTCCTTGTTTCAGAGCAAGTCGACCACCCCCGC
ACCGACCGCGACGAAGAGCGCGGTCGTGGCCAAGACGACGAAGCCCACTG
CCGTCAAGGTTACTAAGGAGATGGCCAAGGCCCTGAGTGCCCCCGCCGCT
GTTGTCACGAAGGCCAAGTCTGgtacgtctgtgtgtttcattagctgaga
taatgtagctctccgtcatattttttattgccagattggagtctgggtcg
ggggagtgtctttgtgtaggtttccgtttgtctgtctgtctgtcagcctg
tctgtttgcacacaggtctgagttatctgtctttatccttttgtgacaat
ttgtatgttttctctgtgtctttgtctctgtctatgggaaggcgcgcttg
acgccgcgcaaggtcccccttgatgaactgcgaaacctagcgcaggggat
tcgatcgagggctgcctcctctcttttctactcttcatgtaactcacatc
ctccttttggtatgctcacctaccgctggtatggctgctcttgtcttctg
tcttttaatatgaagcgaggcagataaacttagtgaatggctttatcatc
ggggtgtgggtccttggagaggagggaagaaatggcagcaatcatgaaac
taacacttagcatgcaaataaaacgaatctgaaggggaccttattaatcc
actgacaagtaccagaaaaatgaaatgaataaaaaaaaatgaaaagaata
tgatatggactccttcctctcatccatcctacactcgacagTCTCGGCTG
TGGAGCCCAGCGCGCCTGTCGTCCCCGCCGCCACCGGTGCTGGTGCCGAC
TTTGGTACGGCCGGTGTCTTGGGTGGTGCTCTCCTCGCTACTGTCGCTGG
TGCCAGCGCCGTCAGCAATGCCCTGACGGGCAAGGCAAAGGCTATTGCCG
ATGCTGAGAAAAAGAAGGCCATTGAGGAGGCGGCGCGCAAGGAATACGTC
ATTCGCCAGCAACGTGCTCGTAAGCCTCTGGCCCCGGGTCCTTCTGACGC
TTTTCGCCTCGCTGCCTCCGTGGGATTGATTCTCGCCTCCACTGGTGCGA
TTGGCGCCTTCGTCCTGCTCCCCAAGCCCGAAGAACCTGCACCCATCGTC
AAGGACATCAAGAAGACATCACCCAAGCCTGCTGCTGCACCTGCTGCTGC
CCCTGCTTCTATTGCCAAGCCCGCACCTGTCGCACCTGCTGCACCTGCCG
CGCCTGCCGCACCTGCCGCACCTGCCGCGCCTGCCGCACCTGCCGCGCCT
GCCGCTAAGGATCCTGAGCCCGTCGCTGCTCCCGTGGCACCCTCGGCTAA
GGAGGTCGAGCCCGTCAAAGCCACGACCCCGGTCGTCGAGGCATCCAAGC
CGATTGCAGTCACCAAGCCTGCTGCTCCCACGCCCGCCACCTCTGCCCCC
GCAGCGCCTGTTGCTGAGGCCCCCAAACCTGCTCCTGTTGCTCCTTCCCC
CGAAGGTGCCCCGGCTGTCGAGGCCGTCAAGGCCAACCCTCCTCCTCCTC
CTCCTCCTGCTTCCAAGGTGATGGAAAAGTCCAAGGCTGCTGCTCCTGCT
GTAAAAGCACCTGCTACGCCTGTACCTGACTTCTCGTCGGTGCCGGGAGA
TGCCCCCTCAGCACGGACGTTGGCGCCTGACACATCTGTGGACCCTGAAT
TCTTGAAGAGTCTGAAGGGCTCAAAAAAGGGGAAGAAGTAAGATGCGGAG
AGAATGAAGAAGGGAATCACGGAAGGGGGGATGCAGAAACTTTGAGGGAA
AAGGATCGTATTGAGTTTTCCGGTGGTATGTCTATGTACGTGTGTGTGTT
AGATGGTGCTGTTCAATCGATGTATCCACCTTTGTATTTTTGTGTCCTTA
CTCTCCCCGACATTAAGGGTCAGGCGAGGGGGGGAGAAGGGGGGTCATTT
TGGTTTGTGTGGGAATGTAGGTGTGGGTGTGAAGTCATGACTTGAAGTAA
ACCAACCGACAAAAAAAACACTCTGTCCGTTTGTCCCTTGGTTTCGTCTG
CTCTCGCCGGGAGCAGAAAAGAAGACGGCGACCAAGGAAGAAAGGGAAAA
AGGAGAAAACATCAGGACATGAACATCGTACGA
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protein sequence of NO15G01920.1

>NO15G01920.1-protein ID=NO15G01920.1-protein|Name=NO15G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MFKCLLLLALLGVACAFMGHVPSTRSRGRIMASLADLEAKLASKPLSAKG
PMPMAPTPVKQSGFSLFQSKSTTPAPTATKSAVVAKTTKPTAVKVTKEMA
KALSAPAAVVTKAKSVSAVEPSAPVVPAATGAGADFGTAGVLGGALLATV
AGASAVSNALTGKAKAIADAEKKKAIEEAARKEYVIRQQRARKPLAPGPS
DAFRLAASVGLILASTGAIGAFVLLPKPEEPAPIVKDIKKTSPKPAAAPA
AAPASIAKPAPVAPAAPAAPAAPAAPAAPAAPAAPAAKDPEPVAAPVAPS
AKEVEPVKATTPVVEASKPIAVTKPAAPTPATSAPAAPVAEAPKPAPVAP
SPEGAPAVEAVKANPPPPPPPASKVMEKSKAAAPAVKAPATPVPDFSSVP
GDAPSARTLAPDTSVDPEFLKSLKGSKKGKK*
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Synonyms
Publications