NO15G01720.1, NO15G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01720.1
Unique NameNO15G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1538
Alignment locationchr15:488740..490277 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:488740..490277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G01720.1 vs.
Match: EWM22479.1 (cytochrome c biogenesis protein transmembrane region [Nannochloropsis gaditana])

HSP 1 Score: 423.3 bits (1087), Expect = 7.900e-115
Identity = 232/286 (81.12%), Postives = 254/286 (88.81%), Query Frame = 0 
Query:   78 PTCHPSGFV-VSSSPSPSCLWRSGLSHHPQQNHARTSG-SLSIFPRRSRRGDVRCSIDAGLALYDLQIWAKELVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPSRDQKTLLFRAGMFTVGLATSLSVLGLSATLAGKLFGSAGAGALGASLPLTASAVAIVMGLNLLDLVNLKLPSFDATLQLDKFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFIAKRGDGFSWVTPA 362
            P+ + S F+ +SSSP  S      L+  P  + +      ++  PRR+R  DVRCS+D GLALYD+QIWAK+LVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDP+RDQ+TLLFRA  FTVGLATSLSVLGLSATLAGKLFGSAGAGALGA+LPLTASAVAIVMGLNLLDLV+L+LPSFDA LQL++FPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAG+LSGTVTSFIAKRGDGFSW TP+
Sbjct:  110 PSRYQSTFIPLSSSPGLSRTTTPSLTLKPVSSPSSAIRLGMNPTPRRTRNRDVRCSVDVGLALYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSFDAALQLERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWPTPS 395
The following BLAST results are available for this feature:
BLAST of NO15G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22479.17.900e-11581.12cytochrome c biogenesis protein transmembrane regi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01720NO15G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01720.1NO15G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01720.1.cds1NO15G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01720.1 ID=NO15G01720.1|Name=NO15G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp
ACAGTGTCCCTCAATGGATGATCAACAACACGTAGCGAGACTCGAGTCGC
ATGACTCCGACTCAGAATCATGTTTTTCCACCAACAACGCGTTTGGACAG
CTTCACTCCCCGCATACTCCTTTTAGTCGTTCTAGTCATCAGCGGCCGCG
CCGTCATGCATTCTCGTCTTACGCGCTCTTCACGTCACTGCTAATGTGGT
TTGGAGGAGTGTCCGCCTCCAGGTCCATGCAGAGGTGGGCTTGCCCAACC
TGTCACCCATCTGGCTTTGTTGTGTCCTCGTCACCATCGCCATCGTGTCT
TTGGCGGTCTGGCCTCTCCCACCACCCTCAGCAGAACCACGCACGCACCA
GTGGCAGCCTAAGCATTTTCCCGAGAAGGTCAAGACGAGGCGATGTCCGC
TGTTCCATAGACGCAGGCCTGGCACTTTACGACTTGCAGATCTGGGCCAA
GGAATTGGTCGACACCCAACTGACGCACCTCACGCCCGTCAGCGGCGCCG
TCCTGTATGGCGCCGGCCTCCTTACCTCCCTTTCCCCTTGCGCCCTCTCT
CTTGTTCCTCTGACTATGGCTTACCTCACGGACGATGGTACCGACCCTTC
CCGCGACCAGAAGACCCTCCTCTTCCGCGCTGGCATGTTCACTGTGGGGC
TAGCCACATCTCTCTCCGTCCTCGGCCTCTCCGCTACCTTGGCTGGGAAG
CTTTTTGGATCTGCTGGTGCAGGGGCATTGGGCGCGTCACTTCCTTTGAC
GGCGTCGGCTGTGGCTATTGTCATGGGCCTTAATCTATTAGACCTGGTTA
ACCTCAAGCTCCCCTCGTTTGATGCCACCTTGCAATTGGACAAATTTCCC
CCCTCCCTTCAAGCCTTCCTCCTGGGCGCAACTTCTGCACTCATCGCATC
TCCGTGCTCCACACCCGTGCTTGCTTCCATTCTAGGATTTGTAGCCGCGT
CGGGCGAGCCATACCTTGGGGCAGGTCTGCTCTTTTCCTATTCATTGGGG
TACTCCACCCCGTTGCTGCTGGCAGGTATTTTGTCGGGAACAGTCACTTC
ATTCATCGCTAAGAGGGGGGATGGATTTTCGTGGGTCACACCCGCGACAG
CCGCCATGCTGATTTCATATGGGACGTATTCGTCGTTGTCGACCTTGTTT
CCGCCATTGGGCTAGGGGAGGGTAGGAGGAGATGATTGGGGGAGGGAGGG
CGCGAGGGACCGATCAAGCAAGAAACAGGCATTGGATGTAGGTATGCTGT
CATTTTAAATCTTTGCATTACAAAAAAAGGCGAGGAGAGAGTGTGGTAGG
CATATAAAGAGAAAATGAAAAATGTGTGGGATGTAGCTTTACACCGGAAA
TGGACTTGGTGAATGAGAAAGTAGAAAATAATTCGAAGAGCGAAAGAAGT
TCAGATGGAGATGCCGCCAACTGATGAAGGCGAAGTAAAGGAAGAAGAGC
TAGGGCTGGTCGTCCTTTGCTTCTCCCTGGAGGCAATATGGGCAGAACCA
GCGCGTGACACTGTAATTTAAGGAAGAGCCTCGAAGCC
back to top

protein sequence of NO15G01720.1

>NO15G01720.1-protein ID=NO15G01720.1-protein|Name=NO15G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MDDQQHVARLESHDSDSESCFSTNNAFGQLHSPHTPFSRSSHQRPRRHAF
SSYALFTSLLMWFGGVSASRSMQRWACPTCHPSGFVVSSSPSPSCLWRSG
LSHHPQQNHARTSGSLSIFPRRSRRGDVRCSIDAGLALYDLQIWAKELVD
TQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPSRDQK
TLLFRAGMFTVGLATSLSVLGLSATLAGKLFGSAGAGALGASLPLTASAV
AIVMGLNLLDLVNLKLPSFDATLQLDKFPPSLQAFLLGATSALIASPCST
PVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFIAK
RGDGFSWVTPATAAMLISYGTYSSLSTLFPPLG*
back to top

mRNA from alignment at chr15:488740..490277-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01720.1 ID=NO15G01720.1|Name=NO15G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at chr15:488740..490277- (Nannochloropsis oceanica)
ACAGTGTCCCTCAATGGATGATCAACAACACGTAGCGAGACTCGAGTCGC
ATGACTCCGACTCAGAATCATGTTTTTCCACCAACAACGCGTTTGGACAG
CTTCACTCCCCGCATACTCCTTTTAGTCGTTCTAGTCATCAGCGGCCGCG
CCGTCATGCATTCTCGTCTTACGCGCTCTTCACGTCACTGCTAATGTGGT
TTGGAGGAGTGTCCGCCTCCAGGTCCATGCAGAGGTGGGCTTGCCCAACC
TGTCACCCATCTGGCTTTGTTGTGTCCTCGTCACCATCGCCATCGTGTCT
TTGGCGGTCTGGCCTCTCCCACCACCCTCAGCAGAACCACGCACGCACCA
GTGGCAGCCTAAGCATTTTCCCGAGAAGGTCAAGACGAGGCGATGTCCGC
TGTTCCATAGACGCAGGCCTGGCACTTTACGACTTGCAGATCTGGGCCAA
GGAATTGGTCGACACCCAACTGACGCACCTCACGCCCGTCAGCGGCGCCG
TCCTGTATGGCGCCGGCCTCCTTACCTCCCTTTCCCCTTGCGCCCTCTCT
CTTGTTCCTCTGACTATGGCTTACCTCACGGACGATGGTACCGACCCTTC
CCGCGACCAGAAGACCCTCCTCTTCCGCGCTGGCATGTTCACTGTGGGGC
TAGCCACATCTCTCTCCGTCCTCGGCCTCTCCGCTACCTTGGCTGGGAAG
CTTTTTGGATCTGCTGGTGCAGGGGCATTGGGCGCGTCACTTCCTTTGAC
GGCGTCGGCTGTGGCTATTGTCATGGGCCTTAATCTATTAGACCTGGTTA
ACCTCAAGCTCCCCTCGTTTGATGCCACCTTGCAATTGGACAAATTTCCC
CCCTCCCTTCAAGCCTTCCTCCTGGGCGCAACTTCTGCACTCATCGCATC
TCCGTGCTCCACACCCGTGCTTGCTTCCATTCTAGGATTTGTAGCCGCGT
CGGGCGAGCCATACCTTGGGGCAGGTCTGCTCTTTTCCTATTCATTGGGG
TACTCCACCCCGTTGCTGCTGGCAGGTATTTTGTCGGGAACAGTCACTTC
ATTCATCGCTAAGAGGGGGGATGGATTTTCGTGGGTCACACCCGCGACAG
CCGCCATGCTGATTTCATATGGGACGTATTCGTCGTTGTCGACCTTGTTT
CCGCCATTGGGCTAGGGGAGGGTAGGAGGAGATGATTGGGGGAGGGAGGG
CGCGAGGGACCGATCAAGCAAGAAACAGGCATTGGATGTAGGTATGCTGT
CATTTTAAATCTTTGCATTACAAAAAAAGGCGAGGAGAGAGTGTGGTAGG
CATATAAAGAGAAAATGAAAAATGTGTGGGATGTAGCTTTACACCGGAAA
TGGACTTGGTGAATGAGAAAGTAGAAAATAATTCGAAGAGCGAAAGAAGT
TCAGATGGAGATGCCGCCAACTGATGAAGGCGAAGTAAAGGAAGAAGAGC
TAGGGCTGGTCGTCCTTTGCTTCTCCCTGGAGGCAATATGGGCAGAACCA
GCGCGTGACACTGTAATTTAAGGAAGAGCCTCGAAGCC
back to top

Coding sequence (CDS) from alignment at chr15:488740..490277-

>NO15G01720.1 ID=NO15G01720.1|Name=NO15G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr15:488740..490277- (Nannochloropsis oceanica)
ATGGATGATCAACAACACGTAGCGAGACTCGAGTCGCATGACTCCGACTC
AGAATCATGTTTTTCCACCAACAACGCGTTTGGACAGCTTCACTCCCCGC
ATACTCCTTTTAGTCGTTCTAGTCATCAGCGGCCGCGCCGTCATGCATTC
TCGTCTTACGCGCTCTTCACGTCACTGCTAATGTGGTTTGGAGGAGTGTC
CGCCTCCAGGTCCATGCAGAGGTGGGCTTGCCCAACCTGTCACCCATCTG
GCTTTGTTGTGTCCTCGTCACCATCGCCATCGTGTCTTTGGCGGTCTGGC
CTCTCCCACCACCCTCAGCAGAACCACGCACGCACCAGTGGCAGCCTAAG
CATTTTCCCGAGAAGGTCAAGACGAGGCGATGTCCGCTGTTCCATAGACG
CAGGCCTGGCACTTTACGACTTGCAGATCTGGGCCAAGGAATTGGTCGAC
ACCCAACTGACGCACCTCACGCCCGTCAGCGGCGCCGTCCTGTATGGCGC
CGGCCTCCTTACCTCCCTTTCCCCTTGCGCCCTCTCTCTTGTTCCTCTGA
CTATGGCTTACCTCACGGACGATGGTACCGACCCTTCCCGCGACCAGAAG
ACCCTCCTCTTCCGCGCTGGCATGTTCACTGTGGGGCTAGCCACATCTCT
CTCCGTCCTCGGCCTCTCCGCTACCTTGGCTGGGAAGCTTTTTGGATCTG
CTGGTGCAGGGGCATTGGGCGCGTCACTTCCTTTGACGGCGTCGGCTGTG
GCTATTGTCATGGGCCTTAATCTATTAGACCTGGTTAACCTCAAGCTCCC
CTCGTTTGATGCCACCTTGCAATTGGACAAATTTCCCCCCTCCCTTCAAG
CCTTCCTCCTGGGCGCAACTTCTGCACTCATCGCATCTCCGTGCTCCACA
CCCGTGCTTGCTTCCATTCTAGGATTTGTAGCCGCGTCGGGCGAGCCATA
CCTTGGGGCAGGTCTGCTCTTTTCCTATTCATTGGGGTACTCCACCCCGT
TGCTGCTGGCAGGTATTTTGTCGGGAACAGTCACTTCATTCATCGCTAAG
AGGGGGGATGGATTTTCGTGGGTCACACCCGCGACAGCCGCCATGCTGAT
TTCATATGGGACGTATTCGTCGTTGTCGACCTTGTTTCCGCCATTGGGCT
AG
back to top
Synonyms
Publications