NO15G01720, NO15G01720 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO15G01720 vs. NCBI_GenBank
Match: EWM22479.1 (cytochrome c biogenesis protein transmembrane region [Nannochloropsis gaditana]) HSP 1 Score: 423.3 bits (1087), Expect = 7.900e-115 Identity = 232/286 (81.12%), Postives = 254/286 (88.81%), Query Frame = 0 Query: 78 PTCHPSGFV-VSSSPSPSCLWRSGLSHHPQQNHARTSG-SLSIFPRRSRRGDVRCSIDAGLALYDLQIWAKELVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPSRDQKTLLFRAGMFTVGLATSLSVLGLSATLAGKLFGSAGAGALGASLPLTASAVAIVMGLNLLDLVNLKLPSFDATLQLDKFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFIAKRGDGFSWVTPA 362 P+ + S F+ +SSSP S L+ P + + ++ PRR+R DVRCS+D GLALYD+QIWAK+LVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDP+RDQ+TLLFRA FTVGLATSLSVLGLSATLAGKLFGSAGAGALGA+LPLTASAVAIVMGLNLLDLV+L+LPSFDA LQL++FPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAG+LSGTVTSFIAKRGDGFSW TP+ Sbjct: 110 PSRYQSTFIPLSSSPGLSRTTTPSLTLKPVSSPSSAIRLGMNPTPRRTRNRDVRCSVDVGLALYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSFDAALQLERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWPTPS 395
BLAST of NO15G01720 vs. NCBI_GenBank
Match: CEM39549.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 223.8 bits (569), Expect = 9.200e-55 Identity = 135/271 (49.82%), Postives = 189/271 (69.74%), Query Frame = 0 Query: 121 RRSRRGDVRCSI--DAGLALYDLQIWAKELVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGT----DPSRDQKTLLFRAGMFTVGLATSLSVLGLSATLAGK-LFGSAGAGALGASLPLTASAVAIVMGLNLLDLVNLKLPSFDATLQLD---KFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFI--AKRGDGFSWVTPATAAMLISYGTYSSLSTLF 380 R S R +++ S+ + GL ++D+Q A ++V QL+HLTPVS AVLY +GL+TSLSPCALSL+PLT+AYL D + DPSR L + MF GLAT+LS LGL A+L G LFG +G +P+ AS +A+VMGLN+L+LV++ P+FD +LD K P +LQ FL G TSALIA+PCSTPVL ++LG+VA++G+P LGA LLF+Y+LGY++P++ AG SG + + + +G W+TP T +L+ YGT+S+L+ LF Sbjct: 27 RPSGRTEMQFSVQDELGLLIFDVQQTAGDIVAYQLSHLTPVSLAVLYLSGLVTSLSPCALSLLPLTIAYLAGDSSTPTDDPSRPPPIPLSSSLMFAAGLATALSSLGLGASLLGMGLFGQT-SGPAERIVPVAASVLAVVMGLNVLNLVSISFPAFDGG-ELDEGRKLPKALQDFLFGVTSALIATPCSTPVLTALLGYVASTGDPLLGAALLFAYTLGYASPVVAAGTASGRLAQLLTQGEGREGLRWITPVTGGLLVGYGTFSTLNALF 295
BLAST of NO15G01720 vs. NCBI_GenBank
Match: WP_015229500.1 (cytochrome C biogenesis protein CcdA [Dactylococcopsis salina] >AFZ50503.1 cytochrome c biogenesis protein [Dactylococcopsis salina PCC 8305] >PNW65453.1 cytochrome C biogenesis protein [Euhalothece sp. KZN 001]) HSP 1 Score: 201.1 bits (510), Expect = 6.400e-48 Identity = 115/244 (47.13%), Postives = 168/244 (68.85%), Query Frame = 0 Query: 136 LALYDLQIWAKELVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPSRDQKTLLFRAGMFTVGLATSLSVLGLSATLAGKLFGSAGAGALGASLPLTASAVAIVMGLNLLDLVNLKLPSFDATLQL-DKFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFIAKRGDGFSWVTPATAAMLISYGTYSSLSTL 379 L LY LQ A +LV QL L+PVS +++ AGLLTSL+PC LS++P+T+ Y+ G + +K L+++ F +GLAT+L+ LG+ A G+++G G G LP+ SA+AI+MGLNLL+++ L+ PSF T + D FPPS++++LLG T L+ASPCSTPVLAS+L +VA+S + LGAGLL SY+ GY TPL++AGI + ++ F+ R G +W+TP + A+LI +G +S L L Sbjct: 7 LFLYQLQQLADQLVSQQLNQLSPVSVGIIFVAGLLTSLTPCMLSMLPITVGYI---GASETEGRKDALWKSSWFALGLATTLAGLGVFAAGFGQVYGQVGVG-----LPIIVSAIAILMGLNLLEIIPLRFPSFGGTQWIKDDFPPSIRSYLLGLTFGLVASPCSTPVLASLLAWVASSQDLILGAGLLLSYTAGYVTPLVIAGIFTASIKKFLEFRRWG-TWITPISGALLIGFGVFSLLLRL 241
BLAST of NO15G01720 vs. NCBI_GenBank
Match: XP_006857711.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Amborella trichopoda] >XP_020531225.1 cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Amborella trichopoda] >ERN19178.1 hypothetical protein AMTR_s00061p00174500 [Amborella trichopoda]) HSP 1 Score: 199.5 bits (506), Expect = 1.900e-47 Identity = 121/250 (48.40%), Postives = 166/250 (66.40%), Query Frame = 0 Query: 135 GLALYDLQIWAKELVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPSRDQKTLLFRAGMFTVGLATSLSVLGLSATLAGKLFGSAGAGALGASLPLTASAVAIVMGLNLLDLVNLKLPS----FDATLQLDKFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFIAKRGDGFSWVTPATAAMLISYGTYSSLSTLFP 381 G LY+ A E V +QLT L+ S AV++GAGL+TSLSPC LS++PLT+ Y+ G+ SR Q ++ + F +GLAT+L++LG++A+LAGK +G G G LPL AS +AI+MGLNLL++V L+LPS FDA FP S+QA+L G T AL ASPCSTPVLA++LG+VAAS +P +G LL +Y+ GY PLLLA + + S ++ R SW+ P + A+L+ G Y+ L LFP Sbjct: 109 GSLLYNAGQQANEAVQSQLTALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ--IIGDSLAFALGLATTLAILGIAASLAGKAYGQIGQG-----LPLAASGLAIIMGLNLLEIVELQLPSFFNDFDARAVAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVAPLLLAASFASALQSLLSFRKFS-SWINPVSGALLLGGGIYTMLDKLFP 350
BLAST of NO15G01720 vs. NCBI_GenBank
Match: PRW59052.1 (cytochrome c-type biogenesis ccda-like chloroplastic 1 [Chlorella sorokiniana]) HSP 1 Score: 198.0 bits (502), Expect = 5.400e-47 Identity = 114/249 (45.78%), Postives = 167/249 (67.07%), Query Frame = 0 Query: 137 ALYDLQIWAKELVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYL-----TDDGTDPSRDQKTLLFRAGMFTVGLATSLSVLGLSATLAGKLFGSAGAGALGASLPLTASAVAIVMGLNLLDLVNLKLPSFDATLQLDKFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFIAKRGDGFSWVTPATAAMLISYGTYSSLSTLFP 381 + ++L +LV +QLT L+P+S AV+ GAGLLTSLSPC LS++PLT+ Y+ + G S +L+ RAG F+ GLAT+L+ LG++++L G +G +G SLP+ S VAIVMGLNLL+L+ L+LPS D ++ PPS QA+L G T AL ASPCSTP+LA++L +V+ + +P G LLF+Y+LGY PLL A + +G + +A R +W+TPA+ +L++ GTY+ L+ +FP Sbjct: 80 SFFELVNQTNDLVASQLTGLSPLSFAVVLGAGLLTSLSPCTLSVLPLTIGYIGGYSSSGSGGSSSDADSSLVLRAGAFSAGLATTLAALGVASSLLGGAYGQ-----IGDSLPIAVSLVAIVMGLNLLELLPLRLPSLDVDVRGLGVPPSAQAYLAGLTFALAASPCSTPILATLLAYVSTTRDPVTGGALLFAYTLGYVAPLLGAALFTGALQRILAMR-QWSAWITPASGVLLLTGGTYALLTRVFP 322
BLAST of NO15G01720 vs. NCBI_GenBank
Match: OWM81202.1 (hypothetical protein CDL15_Pgr007233 [Punica granatum]) HSP 1 Score: 196.8 bits (499), Expect = 1.200e-46 Identity = 119/251 (47.41%), Postives = 166/251 (66.14%), Query Frame = 0 Query: 135 GLALYDLQIWAKELVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPSRDQKTLLFRAGMFTVGLATSLSVLGLSATLAGKLFGSAGAGALGASLPLTASAVAIVMGLNLLDLVNLKLP----SFDATLQLDKFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFIAKRGDGFSWVTPATAAMLISYGTYSSLSTLFPP 382 G LY A E V +QL+ L+ S AV++GAGL+TSLSPC LS++PLT+ Y+ G+ SR + ++ + F +GLAT+L++LG++A+ AGK +G G G LPL ASA+A+VMGLNLL++V L+LP SFD FP S+QA+L G T AL ASPCSTPVLA++LG+VAAS +P +G LL +Y+ GY PLLLA +G + S ++ R +W+ P + A+L+ G Y+ L LFPP Sbjct: 113 GGILYSAGQQANEAVQSQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAE--IIGDSIAFALGLATTLALLGIAASFAGKAYGQIGQG-----LPLVASALAVVMGLNLLEIVELQLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFS-AWINPVSGALLLGGGIYTFLDRLFPP 355
BLAST of NO15G01720 vs. NCBI_GenBank
Match: PKI51161.1 (hypothetical protein CRG98_028448 [Punica granatum]) HSP 1 Score: 196.8 bits (499), Expect = 1.200e-46 Identity = 119/251 (47.41%), Postives = 166/251 (66.14%), Query Frame = 0 Query: 135 GLALYDLQIWAKELVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPSRDQKTLLFRAGMFTVGLATSLSVLGLSATLAGKLFGSAGAGALGASLPLTASAVAIVMGLNLLDLVNLKLP----SFDATLQLDKFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFIAKRGDGFSWVTPATAAMLISYGTYSSLSTLFPP 382 G LY A E V +QL+ L+ S AV++GAGL+TSLSPC LS++PLT+ Y+ G+ SR + ++ + F +GLAT+L++LG++A+ AGK +G G G LPL ASA+A+VMGLNLL++V L+LP SFD FP S+QA+L G T AL ASPCSTPVLA++LG+VAAS +P +G LL +Y+ GY PLLLA +G + S ++ R +W+ P + A+L+ G Y+ L LFPP Sbjct: 41 GGILYSAGQQANEAVQSQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAE--IIGDSIAFALGLATTLALLGIAASFAGKAYGQIGQG-----LPLVASALAVVMGLNLLEIVELQLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFS-AWINPVSGALLLGGGIYTFLDRLFPP 283
BLAST of NO15G01720 vs. NCBI_GenBank
Match: XP_024024901.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein [Morus notabilis]) HSP 1 Score: 195.3 bits (495), Expect = 3.500e-46 Identity = 116/248 (46.77%), Postives = 164/248 (66.13%), Query Frame = 0 Query: 138 LYDLQIWAKELVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPSRDQKTLLFRAGMFTVGLATSLSVLGLSATLAGKLFGSAGAGALGASLPLTASAVAIVMGLNLLDLVNLKLPS----FDATLQLDKFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFIAKRGDGFSWVTPATAAMLISYGTYSSLSTLFPP 382 LY A E V QL+ ++ S AV++GAGL+TSLSPC LS++PLT+ Y+ G+ SR + ++ + F++GLAT+L++LG++A+ AGK +G G G LPL AS +A+VMGLNLL+++ L+LPS FDA FP S+QA+L G T AL ASPCSTPVLAS+LG+VA S +P +G LL +Y+ GY PLLLA +G + S ++ R +W+ P + A+L+ G Y+ L LFPP Sbjct: 103 LYSAGQQANEAVQDQLSAVSFSSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAE--VVGNSVAFSLGLATTLAILGIAASFAGKAYGQIGQG-----LPLAASGLAVVMGLNLLEIIELRLPSFFDNFDARAAAANFPSSVQAYLAGLTFALAASPCSTPVLASLLGYVATSKDPVIGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFS-AWINPVSGALLLGGGVYTFLDRLFPP 342
BLAST of NO15G01720 vs. NCBI_GenBank
Match: NP_001240262.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Glycine max] >XP_006591899.1 PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like isoform X1 [Glycine max] >AAP81162.1 c-type cytochrome biogenesis protein [Glycine max] >ACU18764.1 unknown [Glycine max] >KRH26035.1 hypothetical protein GLYMA_12G147300 [Glycine max]) HSP 1 Score: 194.5 bits (493), Expect = 6.000e-46 Identity = 118/247 (47.77%), Postives = 163/247 (65.99%), Query Frame = 0 Query: 138 LYDLQIWAKELVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPSRDQKTLLFRAGMFTVGLATSLSVLGLSATLAGKLFGSAGAGALGASLPLTASAVAIVMGLNLLDLVNLKLP----SFDATLQLDKFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFIAKRGDGFSWVTPATAAMLISYGTYSSLSTLFP 381 LY A E V QLT L+ S AV+YGAGL+TSLSPC LS++PLT+ Y+ G+ SR + ++ + F++GLAT+L++LG+ A+ AGK +G G G LPL AS +AI+MGLNLL+++ L+LP SFD FP S+QA+L G T AL ASPCSTPVLA++LG+VAAS +P +G LL +Y+ GY +PLLLA +G + S ++ R +W+ P + AML+ G Y+ L LFP Sbjct: 101 LYSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAE--VVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQG-----LPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFS-AWINPISGAMLLGGGVYTFLDRLFP 339
BLAST of NO15G01720 vs. NCBI_GenBank
Match: XP_003527280.1 (PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Glycine max] >KRH55420.1 hypothetical protein GLYMA_06G254100 [Glycine max] >KRH55421.1 hypothetical protein GLYMA_06G254100 [Glycine max]) HSP 1 Score: 194.5 bits (493), Expect = 6.000e-46 Identity = 117/240 (48.75%), Postives = 161/240 (67.08%), Query Frame = 0 Query: 145 AKELVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPSRDQKTLLFRAGMFTVGLATSLSVLGLSATLAGKLFGSAGAGALGASLPLTASAVAIVMGLNLLDLVNLKLP----SFDATLQLDKFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGILSGTVTSFIAKRGDGFSWVTPATAAMLISYGTYSSLSTLFP 381 A E V QLT L+ S AV+YGAGL+TSLSPC LS++PLT+ Y+ G+ SR Q ++ + F++GLAT+L++LG+ A+ AGK +G G G LPL AS +AI+MGLNLL+++ L+LP SFD FP S+QA+L G T AL ASPCSTPVLA++LG+VAAS +P +G LL +Y+ GY +PLLLA +G + S ++ R +W+ P + AML+ G Y+ L LFP Sbjct: 108 ANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ--VVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQG-----LPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFS-AWINPISGAMLLGGGVYTFLDRLFP 339 The following BLAST results are available for this feature:
BLAST of NO15G01720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO15G01720 ID=NO15G01720|Name=NO15G01720|organism=Nannochloropsis oceanica|type=gene|length=1538bpback to top protein sequence of NO15G01720.1 >NO15G01720.1-protein ID=NO15G01720.1-protein|Name=NO15G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bpback to top Synonyms
Publications
|