|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr15 | genome | chr15:485978..488458 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G01710.1 vs.
Match: EWM22433.1 (lipase containing protein [Nannochloropsis gaditana]) HSP 1 Score: 496.5 bits (1277), Expect = 1.600e-136 Identity = 304/635 (47.87%), Postives = 381/635 (60.00%), Query Frame = 0
Query: 5 RRQQLSSLLWRTGLGGVTCYTM---QRGIRSGTTTYCESP----AGPATGPGKRG------------------YTKSTASKFPK---DTPPDKLSLDKALVDMKEANKALGGSLKGDEVLAIMALLAREVVQQQTKKGTHSPA-RHPSSTLVSPPLSALKSRLYVKRFLEYATLCLNVYDLPSDKDWLFPPPELGPVNRWELLSSHTGGVCIPRHVVLRADGGVGTTRRRRTKRLMVVVRGTAEVTDAAINIAMAPGMWRYNGGEHYCHQGIVESTTFLVRMVRPVIWRAIDKMKREEGIDPGNQVEVVFMGHSLGGAIAAVAALELQGEFGVRVPVKSVGFSTPATLSEEVASAPLTRKIITTVVLGDDMIPRCSTRNLQELKRRARRVLVDEEVGIIREIVAGEVTRRGDEWSRQIHGEVTRRGEKWTKQLTAMLSSKANEAKRQLPEGWENLWPLLSVMEGGEVLDVRGLKQAFSGVLAHCLPPLIDQQQQKQQQWKTDAAGVAAVRDKEGVAAPLVMAAERKK------------MAEETTAVLEQAIADYQATLDAEIVYVKDYIERIKFGALDSYLPSSLDPTLSPSSILKAKQRRTGSSSSSSSSSSSSSVSNVENDAFDQEYDAEEE 599
R LSS++WR+GLGGVTCYT G +G ++C S A A+ G +TK SK D PPDKLSL+K L DMKEA++A+GG+L+G+E LA+MALLARE V +QT S +H SS+L PPLS + R K+FLEYA LC N YD KDWL PP V+RW+LLS H GGVCIPRHVVLR DGG GT RRR R++VVVRGTAEVTDAAINIAM PG W + G E+ CHQGIVES FL RM RPV+WRA++ + R+EG DPG++VEVV GHSLGGA AAVAAL+LQGEFG RVPVKSVGFSTPA+L+ ++ASAP TR+++TT+V G D+IPRCSTRNLQELKRRA+ VLV+EEV I+++V E+ RRGD W R +LT +L S A A +QLP W ++ P + EG E V GLK AF G+LA LP L + + + + G EG + V A ER + ++ E LE+ + +YQA LDAEI + KD +ERIK YLPSSL P A G + + V+ + ++E + EEE
Sbjct: 83 RLNVLSSIVWRSGLGGVTCYTATIPHYGATNGAFSFCASSTNNMADGASSQASGGDSEAESREKSRSSVSHPAFTKVKGSKTTPSSIDIPPDKLSLEKVLADMKEASRAMGGTLRGEEALALMALLARETVHRQTNAHRDSTRPQHLSSSLTFPPLSGARRRRRAKQFLEYAVLCENAYDFSEGKDWLEPPAGFESVSRWDLLSFHKGGVCIPRHVVLRVDGGEGTRHRRRKTRVLVVVRGTAEVTDAAINIAMVPGGWTHRGKEYQCHQGIVESAEFLARMARPVVWRALEGL-RQEGGDPGSEVEVVLTGHSLGGATAAVAALKLQGEFGPRVPVKSVGFSTPASLAIDLASAPATRRVVTTLVQGADVIPRCSTRNLQELKRRAQNVLVEEEVESIKQMVREELGRRGDAWGR---------------ELTGLLLSTAEGATQQLPGAWRDMLPPILKAEGRETQGVGGLKAAFGGILARYLPALAPEGGGGEDKEEGADGG-------EGNRSRGVNATERSRDDGHTALEGGATLSTEARRRLEEVLGEYQAVLDAEIAFAKDQLERIKRQTFQYYLPSSLAP--------PAVSDGRGKELTHGQEGGKEVMEGVQKEEEEEEEEEEEE 686
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G01710.1 ID=NO15G01710.1|Name=NO15G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2481bp
ATGTACAGTCTGCGCCGCCAACAGCTCTCTTCTCTCCTCTGGCGCACGGG
TCTGGGAGGCGTTACTTGCTACACCATGCAACGTGGCATCAGGTCGGGCA
CGACCACGTACTGCGAGTCGCCGGCTGGCCCAGCCACCGGACCAGGCAAA
CGTGGATACACGAAGAGTACTGCCTCCAAGTTCCCCAAAGACACACCGCC
GGACAAACTCTCCCTTGACAAGGCATTGGTCGACATGAAAGAAGCCAACA
AGGCCTTAGGCGGCAGCCTAAAAGGAGACGAAGTCCTGGCTATCATGGCA
TTGCTCGCTCGGGAAGTCGTCCAACAGCAGACAAAAAAAGGCACCCACTC
CCCGGCCCGCCACCCCTCATCCACGCTTGTCTCTCCTCCGCTATCCGCCT
TAAAAAGTCGCCTGTATGTCAAACGCTTTTTAGAGTATGCAACTTTGTGC
CTTAATGTCTATGATCTTCCTTCGGATAAAGATTGGCTCTTTCCTCCTCC
AGAGCTCGGCCCTGTCAACCGGTGGGAGCTCCTCTCTTCGCACACAGGCG
GTGTCTGCATCCCTCGCCACGTCGTCCTAAGGGCAGATGGAGGAGTGGGT
ACGACAAGAAGGAGGAGGACGAAACGACTTATGGTTGTAGTGAGGGGGAC
GGCAGAAGTGACGGACGCGGCGATAAATATTGCCATGGCTCCTGGCATGT
GGCGATACAATGGGGGGGAGCATTATTGTCATCAGGGAATCGTTGAATCT
ACAACTTTTCTGGTACGAATGGTCAGGCCGGTTATATGGCGGGCGATCGA
CAAAATGAAGAGGGAGGAGGGGATAGATCCAGGAAATCAGGTTGAGGTAG
TGTTTATGGGCCATAGTCTTGGAGGAGCGATTGCTGCAGTTGCGGCGTTG
GAGCTGCAAGGGGAGTTTGGGGTGCGAGTGCCGGTTAAAAGTGTGGGGTT
TAGCACTCCTGCAACTTTGTCGGAAGAGGTGGCATCGGCACCATTGACCC
GGAAAATAATCACGACTGTTGTGCTCGGGGATGACATGATTCCGAGATGC
TCGACGAGGAATTTGCAGGAGTTAAAGAGGAGAGCGAGAAGAGTGTTGGT
GGATGAGGAAGTGGGCATCATTCGTGAAATAGTGGCGGGGGAGGTCACGA
GGAGGGGGGATGAATGGAGTCGGCAGATACATGGGGAGGTGACGAGGAGA
GGGGAGAAATGGACCAAGCAGTTGACGGCCATGCTCTCAAGCAAGGCGAA
CGAGGCCAAGCGACAGCTTCCTGAAGGGTGGGAAAACTTATGGCCTCTTT
TATCGGTGATGGAGGGGGGGGAAGTATTGGATGTAAGAGGGCTAAAGCAA
GCGTTTAGTGGCGTCTTGGCGCATTGCCTCCCACCGTTGATAGATCAGCA
GCAGCAAAAACAGCAACAGTGGAAGACGGATGCAGCGGGAGTTGCAGCGG
TAAGAGATAAGGAGGGAGTGGCGGCGCCACTGGTTATGGCAGCTGAGAGG
AAGAAGATGGCGGAGGAGACAACTGCAGTGTTGGAGCAGGCGATAGCTGA
TTACCAGGCAACACTCGATGCAGAGATTGTGTACGTCAAAGATTATATTG
AACGCATCAAATTCGGCGCCCTTGATTCCTACCTACCCTCCTCTCTTGAT
CCTACTCTGTCTCCTTCATCGATCTTAAAAGCAAAGCAGAGACGCACTGG
CAGCAGCAGCAGCAGTAGTAGTAGTAGCAGCAGCAGCAGCGTTTCAAACG
TCGAAAACGACGCATTCGACCAGGAGTACGACGCTGAAGAAGAGGCAAAC
GAGCAGGCCCTTTTTGATGCCAATATCACCCGGGCCGCCGAAAGGAATGA
AAAACCCATGGATATCACTGCGGTGCAAGCCATGCTCCAAGCATTAATTG
CCGAGAAAGCCCACATGGCAGCCTCCGCAGTCAAGAGCCAAGTGGAAGCC
CGGGTGAGAGAGTTGTTGAGTTCTTCTTCCAATAAGGTCGACAAAGTGAA
GAACAGGGCGTCGAAATGGATGACGGACTCCTTCAAAGGCTTGCAGGAGC
AGGCAAAAGCAGCCTTACCCGTCGTGGGGGAAAGGAAGAAGGGAGGGAAG
GAGGTTGAAGAGAAAAAGAGGGTGTCAGTTTCGGCGGTGGAAGAAATGGA
CGGAAACATGACGGACTCTGCAACAAAAGCAGCAGCTGCCACAGAAGGGG
ATTTGGACGCAGTAGCTTTGTACCCACCCGGAGAAATTTTTTATATTCAC
CCTTTGCCACTCCCCGATTCCTCCAGCAACAGCAGTGGTAGTGGCAGCAG
CAGCAACGGCAGTCGCGGCGGGCGTCGAAGAGGGAAAGCAAAGTATAATT
ATGAATTGAGACGGGTGAGGGATGTGACGTTCTTTGATGGGATTGTTCTC
TCTCCTCATATGTTTACTGATCATTTGTTGACCAACGCGATCAAGAGCTT
GAAAGAGGTGGGTAAGGAGGGAGACGGTTAA back to topprotein sequence of NO15G01710.1 >NO15G01710.1-protein ID=NO15G01710.1-protein|Name=NO15G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=827bp
MYSLRRQQLSSLLWRTGLGGVTCYTMQRGIRSGTTTYCESPAGPATGPGK
RGYTKSTASKFPKDTPPDKLSLDKALVDMKEANKALGGSLKGDEVLAIMA
LLAREVVQQQTKKGTHSPARHPSSTLVSPPLSALKSRLYVKRFLEYATLC
LNVYDLPSDKDWLFPPPELGPVNRWELLSSHTGGVCIPRHVVLRADGGVG
TTRRRRTKRLMVVVRGTAEVTDAAINIAMAPGMWRYNGGEHYCHQGIVES
TTFLVRMVRPVIWRAIDKMKREEGIDPGNQVEVVFMGHSLGGAIAAVAAL
ELQGEFGVRVPVKSVGFSTPATLSEEVASAPLTRKIITTVVLGDDMIPRC
STRNLQELKRRARRVLVDEEVGIIREIVAGEVTRRGDEWSRQIHGEVTRR
GEKWTKQLTAMLSSKANEAKRQLPEGWENLWPLLSVMEGGEVLDVRGLKQ
AFSGVLAHCLPPLIDQQQQKQQQWKTDAAGVAAVRDKEGVAAPLVMAAER
KKMAEETTAVLEQAIADYQATLDAEIVYVKDYIERIKFGALDSYLPSSLD
PTLSPSSILKAKQRRTGSSSSSSSSSSSSSVSNVENDAFDQEYDAEEEAN
EQALFDANITRAAERNEKPMDITAVQAMLQALIAEKAHMAASAVKSQVEA
RVRELLSSSSNKVDKVKNRASKWMTDSFKGLQEQAKAALPVVGERKKGGK
EVEEKKRVSVSAVEEMDGNMTDSATKAAAATEGDLDAVALYPPGEIFYIH
PLPLPDSSSNSSGSGSSSNGSRGGRRRGKAKYNYELRRVRDVTFFDGIVL
SPHMFTDHLLTNAIKSLKEVGKEGDG* back to topmRNA from alignment at chr15:485978..488458+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G01710.1 ID=NO15G01710.1|Name=NO15G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2481bp|location=Sequence derived from alignment at chr15:485978..488458+ (Nannochloropsis oceanica)
ATGTACAGTCTGCGCCGCCAACAGCTCTCTTCTCTCCTCTGGCGCACGGG
TCTGGGAGGCGTTACTTGCTACACCATGCAACGTGGCATCAGGTCGGGCA
CGACCACGTACTGCGAGTCGCCGGCTGGCCCAGCCACCGGACCAGGCAAA
CGTGGATACACGAAGAGTACTGCCTCCAAGTTCCCCAAAGACACACCGCC
GGACAAACTCTCCCTTGACAAGGCATTGGTCGACATGAAAGAAGCCAACA
AGGCCTTAGGCGGCAGCCTAAAAGGAGACGAAGTCCTGGCTATCATGGCA
TTGCTCGCTCGGGAAGTCGTCCAACAGCAGACAAAAAAAGGCACCCACTC
CCCGGCCCGCCACCCCTCATCCACGCTTGTCTCTCCTCCGCTATCCGCCT
TAAAAAGTCGCCTGTATGTCAAACGCTTTTTAGAGTATGCAACTTTGTGC
CTTAATGTCTATGATCTTCCTTCGGATAAAGATTGGCTCTTTCCTCCTCC
AGAGCTCGGCCCTGTCAACCGGTGGGAGCTCCTCTCTTCGCACACAGGCG
GTGTCTGCATCCCTCGCCACGTCGTCCTAAGGGCAGATGGAGGAGTGGGT
ACGACAAGAAGGAGGAGGACGAAACGACTTATGGTTGTAGTGAGGGGGAC
GGCAGAAGTGACGGACGCGGCGATAAATATTGCCATGGCTCCTGGCATGT
GGCGATACAATGGGGGGGAGCATTATTGTCATCAGGGAATCGTTGAATCT
ACAACTTTTCTGGTACGAATGGTCAGGCCGGTTATATGGCGGGCGATCGA
CAAAATGAAGAGGGAGGAGGGGATAGATCCAGGAAATCAGGTTGAGGTAG
TGTTTATGGGCCATAGTCTTGGAGGAGCGATTGCTGCAGTTGCGGCGTTG
GAGCTGCAAGGGGAGTTTGGGGTGCGAGTGCCGGTTAAAAGTGTGGGGTT
TAGCACTCCTGCAACTTTGTCGGAAGAGGTGGCATCGGCACCATTGACCC
GGAAAATAATCACGACTGTTGTGCTCGGGGATGACATGATTCCGAGATGC
TCGACGAGGAATTTGCAGGAGTTAAAGAGGAGAGCGAGAAGAGTGTTGGT
GGATGAGGAAGTGGGCATCATTCGTGAAATAGTGGCGGGGGAGGTCACGA
GGAGGGGGGATGAATGGAGTCGGCAGATACATGGGGAGGTGACGAGGAGA
GGGGAGAAATGGACCAAGCAGTTGACGGCCATGCTCTCAAGCAAGGCGAA
CGAGGCCAAGCGACAGCTTCCTGAAGGGTGGGAAAACTTATGGCCTCTTT
TATCGGTGATGGAGGGGGGGGAAGTATTGGATGTAAGAGGGCTAAAGCAA
GCGTTTAGTGGCGTCTTGGCGCATTGCCTCCCACCGTTGATAGATCAGCA
GCAGCAAAAACAGCAACAGTGGAAGACGGATGCAGCGGGAGTTGCAGCGG
TAAGAGATAAGGAGGGAGTGGCGGCGCCACTGGTTATGGCAGCTGAGAGG
AAGAAGATGGCGGAGGAGACAACTGCAGTGTTGGAGCAGGCGATAGCTGA
TTACCAGGCAACACTCGATGCAGAGATTGTGTACGTCAAAGATTATATTG
AACGCATCAAATTCGGCGCCCTTGATTCCTACCTACCCTCCTCTCTTGAT
CCTACTCTGTCTCCTTCATCGATCTTAAAAGCAAAGCAGAGACGCACTGG
CAGCAGCAGCAGCAGTAGTAGTAGTAGCAGCAGCAGCAGCGTTTCAAACG
TCGAAAACGACGCATTCGACCAGGAGTACGACGCTGAAGAAGAGGCAAAC
GAGCAGGCCCTTTTTGATGCCAATATCACCCGGGCCGCCGAAAGGAATGA
AAAACCCATGGATATCACTGCGGTGCAAGCCATGCTCCAAGCATTAATTG
CCGAGAAAGCCCACATGGCAGCCTCCGCAGTCAAGAGCCAAGTGGAAGCC
CGGGTGAGAGAGTTGTTGAGTTCTTCTTCCAATAAGGTCGACAAAGTGAA
GAACAGGGCGTCGAAATGGATGACGGACTCCTTCAAAGGCTTGCAGGAGC
AGGCAAAAGCAGCCTTACCCGTCGTGGGGGAAAGGAAGAAGGGAGGGAAG
GAGGTTGAAGAGAAAAAGAGGGTGTCAGTTTCGGCGGTGGAAGAAATGGA
CGGAAACATGACGGACTCTGCAACAAAAGCAGCAGCTGCCACAGAAGGGG
ATTTGGACGCAGTAGCTTTGTACCCACCCGGAGAAATTTTTTATATTCAC
CCTTTGCCACTCCCCGATTCCTCCAGCAACAGCAGTGGTAGTGGCAGCAG
CAGCAACGGCAGTCGCGGCGGGCGTCGAAGAGGGAAAGCAAAGTATAATT
ATGAATTGAGACGGGTGAGGGATGTGACGTTCTTTGATGGGATTGTTCTC
TCTCCTCATATGTTTACTGATCATTTGTTGACCAACGCGATCAAGAGCTT
GAAAGAGGTGGGTAAGGAGGGAGACGGTTAA back to topCoding sequence (CDS) from alignment at chr15:485978..488458+ >NO15G01710.1 ID=NO15G01710.1|Name=NO15G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=2481bp|location=Sequence derived from alignment at chr15:485978..488458+ (Nannochloropsis oceanica)
ATGTACAGTCTGCGCCGCCAACAGCTCTCTTCTCTCCTCTGGCGCACGGG
TCTGGGAGGCGTTACTTGCTACACCATGCAACGTGGCATCAGGTCGGGCA
CGACCACGTACTGCGAGTCGCCGGCTGGCCCAGCCACCGGACCAGGCAAA
CGTGGATACACGAAGAGTACTGCCTCCAAGTTCCCCAAAGACACACCGCC
GGACAAACTCTCCCTTGACAAGGCATTGGTCGACATGAAAGAAGCCAACA
AGGCCTTAGGCGGCAGCCTAAAAGGAGACGAAGTCCTGGCTATCATGGCA
TTGCTCGCTCGGGAAGTCGTCCAACAGCAGACAAAAAAAGGCACCCACTC
CCCGGCCCGCCACCCCTCATCCACGCTTGTCTCTCCTCCGCTATCCGCCT
TAAAAAGTCGCCTGTATGTCAAACGCTTTTTAGAGTATGCAACTTTGTGC
CTTAATGTCTATGATCTTCCTTCGGATAAAGATTGGCTCTTTCCTCCTCC
AGAGCTCGGCCCTGTCAACCGGTGGGAGCTCCTCTCTTCGCACACAGGCG
GTGTCTGCATCCCTCGCCACGTCGTCCTAAGGGCAGATGGAGGAGTGGGT
ACGACAAGAAGGAGGAGGACGAAACGACTTATGGTTGTAGTGAGGGGGAC
GGCAGAAGTGACGGACGCGGCGATAAATATTGCCATGGCTCCTGGCATGT
GGCGATACAATGGGGGGGAGCATTATTGTCATCAGGGAATCGTTGAATCT
ACAACTTTTCTGGTACGAATGGTCAGGCCGGTTATATGGCGGGCGATCGA
CAAAATGAAGAGGGAGGAGGGGATAGATCCAGGAAATCAGGTTGAGGTAG
TGTTTATGGGCCATAGTCTTGGAGGAGCGATTGCTGCAGTTGCGGCGTTG
GAGCTGCAAGGGGAGTTTGGGGTGCGAGTGCCGGTTAAAAGTGTGGGGTT
TAGCACTCCTGCAACTTTGTCGGAAGAGGTGGCATCGGCACCATTGACCC
GGAAAATAATCACGACTGTTGTGCTCGGGGATGACATGATTCCGAGATGC
TCGACGAGGAATTTGCAGGAGTTAAAGAGGAGAGCGAGAAGAGTGTTGGT
GGATGAGGAAGTGGGCATCATTCGTGAAATAGTGGCGGGGGAGGTCACGA
GGAGGGGGGATGAATGGAGTCGGCAGATACATGGGGAGGTGACGAGGAGA
GGGGAGAAATGGACCAAGCAGTTGACGGCCATGCTCTCAAGCAAGGCGAA
CGAGGCCAAGCGACAGCTTCCTGAAGGGTGGGAAAACTTATGGCCTCTTT
TATCGGTGATGGAGGGGGGGGAAGTATTGGATGTAAGAGGGCTAAAGCAA
GCGTTTAGTGGCGTCTTGGCGCATTGCCTCCCACCGTTGATAGATCAGCA
GCAGCAAAAACAGCAACAGTGGAAGACGGATGCAGCGGGAGTTGCAGCGG
TAAGAGATAAGGAGGGAGTGGCGGCGCCACTGGTTATGGCAGCTGAGAGG
AAGAAGATGGCGGAGGAGACAACTGCAGTGTTGGAGCAGGCGATAGCTGA
TTACCAGGCAACACTCGATGCAGAGATTGTGTACGTCAAAGATTATATTG
AACGCATCAAATTCGGCGCCCTTGATTCCTACCTACCCTCCTCTCTTGAT
CCTACTCTGTCTCCTTCATCGATCTTAAAAGCAAAGCAGAGACGCACTGG
CAGCAGCAGCAGCAGTAGTAGTAGTAGCAGCAGCAGCAGCGTTTCAAACG
TCGAAAACGACGCATTCGACCAGGAGTACGACGCTGAAGAAGAGGCAAAC
GAGCAGGCCCTTTTTGATGCCAATATCACCCGGGCCGCCGAAAGGAATGA
AAAACCCATGGATATCACTGCGGTGCAAGCCATGCTCCAAGCATTAATTG
CCGAGAAAGCCCACATGGCAGCCTCCGCAGTCAAGAGCCAAGTGGAAGCC
CGGGTGAGAGAGTTGTTGAGTTCTTCTTCCAATAAGGTCGACAAAGTGAA
GAACAGGGCGTCGAAATGGATGACGGACTCCTTCAAAGGCTTGCAGGAGC
AGGCAAAAGCAGCCTTACCCGTCGTGGGGGAAAGGAAGAAGGGAGGGAAG
GAGGTTGAAGAGAAAAAGAGGGTGTCAGTTTCGGCGGTGGAAGAAATGGA
CGGAAACATGACGGACTCTGCAACAAAAGCAGCAGCTGCCACAGAAGGGG
ATTTGGACGCAGTAGCTTTGTACCCACCCGGAGAAATTTTTTATATTCAC
CCTTTGCCACTCCCCGATTCCTCCAGCAACAGCAGTGGTAGTGGCAGCAG
CAGCAACGGCAGTCGCGGCGGGCGTCGAAGAGGGAAAGCAAAGTATAATT
ATGAATTGAGACGGGTGAGGGATGTGACGTTCTTTGATGGGATTGTTCTC
TCTCCTCATATGTTTACTGATCATTTGTTGACCAACGCGATCAAGAGCTT
GAAAGAGGTGGGTAAGGAGGGAGACGGTTAA back to top
|